Wall clock time and date at job start Sun Mar 7 2021 22:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37786 * 119.84993 * 2 1 4 4 C 1.39707 * 119.90586 * 179.72413 * 3 2 1 5 5 C 1.47533 * 120.19329 * 180.25336 * 4 3 2 6 6 O 1.21595 * 119.99833 * 180.25146 * 5 4 3 7 7 N 1.34768 * 119.99939 * 0.24478 * 5 4 3 8 8 C 1.46506 * 120.00375 * 180.02562 * 7 5 4 9 9 H 1.09008 * 112.84133 * 23.80580 * 8 7 5 10 10 C 1.53774 * 113.61548 * 155.00027 * 8 7 5 11 11 C 1.53789 * 87.08024 * 139.98432 * 10 8 7 12 12 H 1.08998 * 113.60905 * 89.11670 * 11 10 8 13 13 O 1.42897 * 113.61555 * 219.93706 * 11 10 8 14 14 C 1.53774 * 113.61540 * 252.50463 * 8 7 5 15 15 C 1.40149 * 119.61659 * 0.49945 * 4 3 2 16 16 O 1.35655 * 120.15107 * 179.77654 * 15 4 3 17 17 C 1.38710 * 119.69595 * 359.49590 * 15 4 3 18 18 C 1.50698 * 119.95410 * 180.22681 * 17 15 4 19 19 O 1.42898 * 109.47580 * 285.00465 * 18 17 15 20 20 Si 1.86296 * 109.47007 * 165.00190 * 18 17 15 21 21 C 1.38047 * 120.08716 * 0.25919 * 17 15 4 22 22 H 1.09000 * 109.47037 * 270.02544 * 1 2 3 23 23 H 1.09006 * 109.46884 * 30.02482 * 1 2 3 24 24 H 1.08999 * 109.46946 * 150.02253 * 1 2 3 25 25 H 1.07997 * 120.04781 * 359.97438 * 3 2 1 26 26 H 0.97004 * 120.00113 * 0.02562 * 7 5 4 27 27 H 1.08997 * 113.61757 * 254.53153 * 10 8 7 28 28 H 1.09001 * 113.61333 * 25.35651 * 10 8 7 29 29 H 0.96699 * 113.99753 * 180.02562 * 13 11 10 30 30 H 1.08992 * 113.61838 * 334.56026 * 14 8 7 31 31 H 1.09006 * 113.61909 * 105.46996 * 14 8 7 32 32 H 0.96701 * 113.99698 * 269.72682 * 16 15 4 33 33 H 1.08998 * 109.46904 * 45.00596 * 18 17 15 34 34 H 0.96700 * 114.00008 * 300.00251 * 19 18 17 35 35 H 1.48500 * 110.00351 * 180.02562 * 20 18 17 36 36 H 1.48501 * 110.00157 * 301.32226 * 20 18 17 37 37 H 1.08001 * 119.80642 * 179.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1964 0.0058 5 6 4.3306 2.4723 0.0115 6 8 5.5465 2.4694 0.0120 7 7 3.6595 3.6410 0.0161 8 6 4.3950 4.9081 0.0211 9 1 5.4023 4.8143 -0.3846 10 6 3.5999 6.0843 -0.5698 11 6 4.1897 6.9473 0.5582 12 1 5.1414 7.4119 0.3003 13 8 3.2555 7.8709 1.1205 14 6 4.3377 5.6482 1.3678 15 6 4.2837 -0.0213 0.0010 16 8 5.6402 -0.0326 0.0020 17 6 3.5770 -1.2148 0.0011 18 6 4.3172 -2.5275 0.0012 19 8 4.8549 -2.7713 -1.3002 20 14 3.1443 -3.9017 0.4558 21 6 2.1966 -1.2018 0.0006 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6512 2.1294 -0.0004 26 1 2.6895 3.6434 0.0160 27 1 3.9321 6.3798 -1.5649 28 1 2.5192 5.9573 -0.5046 29 1 3.6208 8.4168 1.8302 30 1 3.4589 5.4028 1.9640 31 1 5.2657 5.5918 1.9369 32 1 6.0341 -0.0362 -0.8811 33 1 5.1286 -2.4871 0.7278 34 1 4.1879 -2.8198 -1.9986 35 1 3.8622 -5.2016 0.4600 36 1 2.5540 -3.6437 1.7938 37 1 1.6509 -2.1338 0.0002 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_13422088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:01:34 Heat of formation + Delta-G solvation = -103.325194 kcal Electronic energy + Delta-G solvation = -21990.682345 eV Core-core repulsion = 18507.720251 eV Total energy + Delta-G solvation = -3482.962093 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79957 -40.74369 -39.30433 -38.01542 -37.61492 -36.34268 -34.22883 -33.13224 -32.45145 -27.70499 -26.87144 -26.82028 -26.16247 -24.05655 -22.09534 -21.50311 -20.90833 -19.53497 -18.84518 -18.34916 -17.85417 -17.34830 -16.85463 -16.60646 -16.28744 -16.08749 -15.86844 -15.52732 -15.07107 -14.95140 -14.66457 -14.53973 -14.19672 -13.77887 -13.70911 -13.58924 -13.36988 -13.09747 -12.80604 -12.63363 -12.34846 -12.14040 -12.06742 -11.80742 -11.67754 -10.98344 -10.79495 -10.42163 -10.22138 -10.02127 -9.55390 -5.10896 -0.36740 0.01726 1.21537 1.59682 1.74134 1.93148 2.04768 2.54284 3.16898 3.19342 3.32997 3.37318 3.47512 3.52139 3.60829 3.61958 3.73712 3.83427 4.01717 4.06195 4.22752 4.42032 4.46709 4.52037 4.55474 4.61363 4.63920 4.69536 4.83297 4.87394 4.88599 4.94023 5.04480 5.15255 5.27014 5.45358 5.54666 6.43402 6.50327 6.60051 6.76561 7.20817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.067 4.067 4 C -0.165 4.165 5 C 0.561 3.439 6 O -0.517 6.517 7 N -0.717 5.717 8 C 0.126 3.874 9 H 0.121 0.879 10 C -0.137 4.137 11 C 0.080 3.920 12 H 0.088 0.912 13 O -0.558 6.558 14 C -0.183 4.183 15 C 0.191 3.809 16 O -0.473 6.473 17 C -0.153 4.153 18 C -0.063 4.063 19 O -0.537 6.537 20 Si 0.685 3.315 21 C -0.072 4.072 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.400 0.600 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.382 0.618 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.400 0.600 33 H 0.119 0.881 34 H 0.377 0.623 35 H -0.252 1.252 36 H -0.256 1.256 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 0.849 -2.441 6.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.098 4.098 3 C -0.086 4.086 4 C -0.169 4.169 5 C 0.348 3.652 6 O -0.393 6.393 7 N -0.369 5.369 8 C 0.021 3.979 9 H 0.138 0.862 10 C -0.175 4.175 11 C 0.020 3.980 12 H 0.106 0.894 13 O -0.364 6.364 14 C -0.222 4.222 15 C 0.144 3.856 16 O -0.284 6.284 17 C -0.154 4.154 18 C -0.173 4.173 19 O -0.342 6.342 20 Si 0.586 3.414 21 C -0.090 4.090 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.149 0.851 26 H 0.236 0.764 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.230 0.770 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.259 0.741 33 H 0.136 0.864 34 H 0.224 0.776 35 H -0.176 1.176 36 H -0.180 1.180 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.181 -0.067 -1.382 5.363 hybrid contribution 0.412 0.782 0.240 0.916 sum -4.770 0.715 -1.142 4.956 Atomic orbital electron populations 1.20847 0.89898 1.03609 1.03033 1.19806 0.96843 0.92228 1.00878 1.21134 0.92107 0.98343 0.97014 1.20385 0.93966 0.93438 1.09110 1.18071 0.87343 0.83380 0.76398 1.90836 1.13007 1.87261 1.48195 1.45829 1.10080 1.05153 1.75834 1.22223 0.97595 0.81192 0.96917 0.86162 1.23466 1.01561 0.93857 0.98598 1.23077 0.92686 0.87790 0.94447 0.89417 1.86509 1.39979 1.54071 1.55829 1.24210 1.03573 0.96583 0.97872 1.18231 0.83979 0.89694 0.93684 1.84683 1.14138 1.95870 1.33736 1.20707 0.94049 0.95839 1.04853 1.25018 1.04349 0.98683 0.89250 1.86542 1.37234 1.94313 1.16131 0.95157 0.83151 0.77543 0.85582 1.20992 0.92572 0.97960 0.97484 0.90627 0.91017 0.90754 0.85105 0.76404 0.89776 0.88612 0.77037 0.88846 0.90516 0.74103 0.86354 0.77581 1.17637 1.18007 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.45 10.00 36.01 0.36 0.81 16 2 C -0.10 0.16 5.87 -104.67 -0.61 -0.45 16 3 C -0.07 0.07 9.18 -39.20 -0.36 -0.29 16 4 C -0.17 -0.28 5.89 -104.84 -0.62 -0.90 16 5 C 0.56 1.70 7.76 -12.47 -0.10 1.60 16 6 O -0.52 -3.43 14.76 -16.60 -0.24 -3.68 16 7 N -0.72 -0.04 5.30 -54.06 -0.29 -0.33 16 8 C 0.13 -0.01 4.24 -67.12 -0.28 -0.29 16 9 H 0.12 0.14 7.46 -51.92 -0.39 -0.25 16 10 C -0.14 0.17 7.66 -25.92 -0.20 -0.03 16 11 C 0.08 -0.08 5.21 -25.91 -0.14 -0.21 16 12 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 13 O -0.56 -0.04 13.67 -35.23 -0.48 -0.52 16 14 C -0.18 0.07 7.71 -25.92 -0.20 -0.13 16 15 C 0.19 0.48 6.69 -38.69 -0.26 0.22 16 16 O -0.47 -1.83 10.91 -40.54 -0.44 -2.27 16 17 C -0.15 -0.08 5.27 -104.52 -0.55 -0.63 16 18 C -0.06 -0.02 2.38 36.00 0.09 0.07 16 19 O -0.54 -0.02 12.88 -35.23 -0.45 -0.47 16 20 Si 0.68 -0.77 29.91 -169.99 -5.08 -5.85 16 21 C -0.07 0.10 8.30 -39.53 -0.33 -0.23 16 22 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 23 H 0.07 -0.33 8.08 -51.93 -0.42 -0.75 16 24 H 0.07 -0.36 8.08 -51.93 -0.42 -0.78 16 25 H 0.13 -0.48 6.40 -52.49 -0.34 -0.82 16 26 H 0.40 -0.98 6.76 -40.82 -0.28 -1.25 16 27 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 28 H 0.10 -0.13 8.12 -51.93 -0.42 -0.55 16 29 H 0.38 -1.43 9.12 45.56 0.42 -1.01 16 30 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.40 0.43 9.06 45.56 0.41 0.84 16 33 H 0.12 0.24 7.83 -51.93 -0.41 -0.16 16 34 H 0.38 -1.58 8.70 45.56 0.40 -1.18 16 35 H -0.25 -0.56 7.11 56.52 0.40 -0.16 16 36 H -0.26 -0.37 7.11 56.52 0.40 0.03 16 37 H 0.14 -0.54 5.10 -52.49 -0.27 -0.81 16 LS Contribution 313.24 15.07 4.72 4.72 Total: 0.00 -9.95 313.24 -8.49 -18.44 By element: Atomic # 1 Polarization: -6.56 SS G_CDS: -3.02 Total: -9.58 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.20 Total: -0.45 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -0.29 Total: -0.33 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -1.62 Total: -6.95 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.08 Total: -5.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -9.95 -8.49 -18.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13422088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.886 kcal (2) G-P(sol) polarization free energy of solvation -9.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds