Wall clock time and date at job start Sun Mar 7 2021 22:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86295 * 109.47214 * 2 1 4 4 C 1.50699 * 109.47370 * 120.00625 * 2 1 3 5 5 C 1.34172 * 125.44197 * 64.99720 * 4 2 1 6 6 C 1.47025 * 105.95704 * 179.97438 * 5 4 2 7 7 C 1.47372 * 127.19168 * 179.97438 * 6 5 4 8 8 O 1.21612 * 120.00427 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00025 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00453 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84754 * 23.80262 * 10 9 7 12 12 C 1.53776 * 113.61821 * 154.99924 * 10 9 7 13 13 C 1.53774 * 87.08408 * 89.20147 * 12 10 9 14 14 H 1.08995 * 113.62199 * 140.06511 * 13 12 10 15 15 O 1.42903 * 113.61673 * 270.88945 * 13 12 10 16 16 C 1.53777 * 87.08184 * 25.43089 * 13 12 10 17 17 C 1.36416 * 105.61464 * 0.22752 * 6 5 4 18 18 O 1.33659 * 108.39404 * 359.63088 * 17 6 5 19 19 H 0.96696 * 114.00279 * 59.99680 * 1 2 3 20 20 H 1.09005 * 109.46911 * 240.00580 * 2 1 3 21 21 H 1.48505 * 109.99895 * 60.00533 * 3 2 1 22 22 H 1.48501 * 110.00440 * 181.32297 * 3 2 1 23 23 H 1.07998 * 127.01931 * 0.02562 * 5 4 2 24 24 H 0.97003 * 119.99584 * 359.97438 * 9 7 6 25 25 H 1.09002 * 113.61135 * 334.65240 * 12 10 9 26 26 H 1.08996 * 113.61949 * 203.75319 * 12 10 9 27 27 H 0.96700 * 114.00311 * 179.97438 * 15 13 12 28 28 H 1.09007 * 113.61025 * 89.11391 * 16 13 12 29 29 H 1.08997 * 113.62410 * 220.02130 * 16 13 12 30 30 H 1.07998 * 125.80396 * 179.74872 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7552 -2.0123 1.5035 6 6 2.4132 -2.2465 2.7973 7 6 2.5009 -3.5194 3.5346 8 8 1.9933 -4.5246 3.0752 9 7 3.1436 -3.5698 4.7182 10 6 3.2303 -4.8351 5.4515 11 1 3.1270 -5.7067 4.8053 12 6 4.4350 -4.9138 6.4040 13 6 3.5260 -4.2943 7.4786 14 1 3.6623 -4.7283 8.4691 15 8 3.5463 -2.8655 7.4912 16 6 2.3377 -4.8865 6.7027 17 6 2.9207 -1.0379 3.1752 18 8 2.6270 -0.1422 2.2276 19 1 -0.3933 0.4417 -0.7650 20 1 1.7923 -0.5138 -0.8901 21 1 1.5616 2.4678 1.2086 22 1 3.5346 1.7703 -0.0322 23 1 1.2366 -2.7397 0.8966 24 1 3.5488 -2.7681 5.0845 25 1 5.2656 -4.2714 6.1115 26 1 4.7466 -5.9333 6.6306 27 1 2.9761 -2.4699 8.1648 28 1 2.0759 -5.8987 7.0110 29 1 1.4750 -4.2222 6.6512 30 1 3.4684 -0.8391 4.0845 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_13456056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:01:48 Heat of formation + Delta-G solvation = -68.115562 kcal Electronic energy + Delta-G solvation = -17028.228759 eV Core-core repulsion = 13986.094848 eV Total energy + Delta-G solvation = -3042.133911 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 240.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.89927 -41.33063 -39.57476 -37.91318 -36.09742 -34.54059 -33.65478 -31.88672 -26.92545 -26.80690 -26.07640 -24.29076 -22.40021 -21.14818 -20.69362 -19.07396 -18.69052 -18.27033 -17.52936 -17.30570 -17.05094 -16.32718 -16.10212 -15.83456 -15.72826 -15.28390 -14.76083 -14.32422 -14.22720 -13.84787 -13.71458 -13.55414 -12.76130 -12.71908 -12.37199 -12.18341 -11.52376 -11.35584 -11.11669 -10.73317 -10.50770 -10.21728 -9.91167 -5.05110 0.07285 0.67156 1.16561 1.48984 1.67747 1.90926 2.00928 2.09342 3.07349 3.25717 3.37295 3.44788 3.66553 3.68782 3.81128 3.82257 4.10185 4.19760 4.32599 4.38880 4.66229 4.68843 4.72714 4.78150 4.82363 4.93500 4.98860 5.01347 5.46169 5.67190 6.36961 6.81190 6.81703 7.02596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.049 4.049 3 Si 0.820 3.180 4 C -0.028 4.028 5 C -0.143 4.143 6 C -0.263 4.263 7 C 0.587 3.413 8 O -0.583 6.583 9 N -0.688 5.688 10 C 0.106 3.894 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.085 3.915 14 H 0.092 0.908 15 O -0.568 6.568 16 C -0.183 4.183 17 C 0.056 3.944 18 O -0.184 6.184 19 H 0.414 0.586 20 H 0.121 0.879 21 H -0.302 1.302 22 H -0.289 1.289 23 H 0.156 0.844 24 H 0.415 0.585 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.400 0.600 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 3.686 1.031 4.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.157 4.157 3 Si 0.724 3.276 4 C -0.075 4.075 5 C -0.163 4.163 6 C -0.268 4.268 7 C 0.376 3.624 8 O -0.464 6.464 9 N -0.339 5.339 10 C 0.001 3.999 11 H 0.102 0.898 12 C -0.171 4.171 13 C 0.026 3.974 14 H 0.110 0.890 15 O -0.377 6.377 16 C -0.222 4.222 17 C -0.014 4.014 18 O -0.081 6.081 19 H 0.267 0.733 20 H 0.139 0.861 21 H -0.230 1.230 22 H -0.216 1.216 23 H 0.174 0.826 24 H 0.253 0.747 25 H 0.099 0.901 26 H 0.147 0.853 27 H 0.251 0.749 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.467 3.459 1.172 4.407 hybrid contribution -0.414 -0.598 0.871 1.135 sum 2.053 2.860 2.044 4.071 Atomic orbital electron populations 1.86419 1.16341 1.82727 1.52057 1.24176 0.86441 1.12839 0.92202 0.94027 0.76947 0.72806 0.83838 1.21769 1.01023 0.92258 0.92464 1.22613 1.01642 0.95941 0.96101 1.21540 1.10843 0.94841 0.99566 1.17460 0.77458 0.86764 0.80711 1.90767 1.48959 1.37208 1.69506 1.45408 1.55856 1.13081 1.19598 1.21979 0.98521 0.86564 0.92833 0.89754 1.23488 0.96291 1.03357 0.93977 1.22765 0.94778 0.81331 0.98531 0.89036 1.86293 1.70689 1.18601 1.62096 1.24162 0.98237 1.03335 0.96432 1.25237 0.97777 0.85467 0.92948 1.83737 1.57757 1.39741 1.26831 0.73294 0.86141 1.22982 1.21613 0.82646 0.74658 0.90055 0.85342 0.74930 0.87064 0.91728 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.02 12.86 -148.98 -1.92 -1.90 16 2 C -0.05 0.01 2.96 71.24 0.21 0.22 16 3 Si 0.82 -2.05 32.09 68.60 2.20 0.15 16 4 C -0.03 -0.20 6.22 24.76 0.15 -0.04 16 5 C -0.14 -1.46 10.90 23.65 0.26 -1.20 16 6 C -0.26 -2.27 6.31 -18.99 -0.12 -2.39 16 7 C 0.59 6.59 7.81 86.65 0.68 7.26 16 8 O -0.58 -11.61 16.58 -4.07 -0.07 -11.67 16 9 N -0.69 -2.67 5.15 -443.35 -2.28 -4.95 16 10 C 0.11 0.27 4.32 45.52 0.20 0.46 16 11 H 0.08 0.57 7.46 -2.39 -0.02 0.55 16 12 C -0.13 0.44 7.66 31.12 0.24 0.68 16 13 C 0.09 -0.38 5.28 31.12 0.16 -0.22 16 14 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 15 O -0.57 2.49 12.32 -148.98 -1.84 0.66 16 16 C -0.18 0.19 7.71 31.12 0.24 0.43 16 17 C 0.06 0.13 11.61 67.39 0.78 0.92 16 18 O -0.18 -1.20 8.90 4.40 0.04 -1.16 16 19 H 0.41 -4.96 8.74 -74.06 -0.65 -5.61 16 20 H 0.12 -0.68 7.96 -2.38 -0.02 -0.70 16 21 H -0.30 -1.86 7.11 99.48 0.71 -1.16 16 22 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 23 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 24 H 0.42 -0.40 6.57 -92.71 -0.61 -1.01 16 25 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.40 -4.42 9.12 -74.06 -0.68 -5.10 16 28 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.26 -1.98 7.47 -2.91 -0.02 -2.00 16 Total: 0.00 -26.77 268.99 -1.75 -28.52 By element: Atomic # 1 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.77 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 2.80 Total: 6.11 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -2.28 Total: -4.95 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -3.78 Total: -14.07 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: 2.20 Total: 0.15 kcal Total: -26.77 -1.75 -28.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13456056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.591 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds