Wall clock time and date at job start Sun Mar 7 2021 22:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37865 * 126.46246 * 2 1 4 4 C 1.46679 * 126.22894 * 0.05522 * 3 2 1 5 5 O 1.21694 * 120.00251 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00146 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99996 * 180.02562 * 6 4 3 8 8 H 1.08998 * 112.85022 * 336.18842 * 7 6 4 9 9 C 1.53779 * 113.61663 * 107.50214 * 7 6 4 10 10 C 1.53784 * 87.08071 * 89.11379 * 9 7 6 11 11 H 1.09000 * 113.68966 * 139.99767 * 10 9 7 12 12 O 1.42905 * 113.61170 * 270.88542 * 10 9 7 13 13 C 1.53775 * 87.08293 * 25.43088 * 10 9 7 14 14 N 1.37646 * 107.53699 * 179.76278 * 3 2 1 15 15 C 1.35531 * 108.64635 * 0.42573 * 14 3 2 16 16 C 1.50699 * 125.56820 * 179.83302 * 15 14 3 17 17 O 1.42907 * 109.46603 * 64.72018 * 16 15 14 18 18 Si 1.86298 * 109.47032 * 184.71321 * 16 15 14 19 19 C 1.35455 * 108.86747 * 359.56957 * 15 14 3 20 20 H 1.08995 * 109.47318 * 270.00082 * 1 2 3 21 21 H 1.08997 * 109.47284 * 29.99815 * 1 2 3 22 22 H 1.08998 * 109.47494 * 149.99968 * 1 2 3 23 23 H 0.96995 * 119.99535 * 359.97438 * 6 4 3 24 24 H 1.08998 * 113.61676 * 203.66140 * 9 7 6 25 25 H 1.09000 * 113.61346 * 334.56913 * 9 7 6 26 26 H 0.96702 * 113.99703 * 277.49622 * 12 10 9 27 27 H 1.08999 * 113.62053 * 220.01600 * 13 10 9 28 28 H 1.08996 * 113.68767 * 89.12541 * 13 10 9 29 29 H 0.97003 * 125.68063 * 180.27579 * 14 3 2 30 30 H 1.08996 * 109.47117 * 304.71931 * 16 15 14 31 31 H 0.96697 * 114.00527 * 59.99993 * 17 16 15 32 32 H 1.48506 * 109.99834 * 58.68765 * 18 16 15 33 33 H 1.48502 * 110.00011 * 180.02562 * 18 16 15 34 34 H 1.08003 * 126.06848 * 180.30599 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1088 0.0000 4 6 1.8899 2.5091 0.0011 5 8 0.7027 2.7766 0.0017 6 7 2.8038 3.4998 0.0005 7 6 2.3679 4.8985 0.0022 8 1 1.3640 5.0294 -0.4017 9 6 2.5912 5.6117 1.3461 10 6 3.9865 5.9916 0.8231 11 1 4.2904 7.0057 1.0826 12 8 4.9918 5.0190 1.1157 13 6 3.4030 5.8669 -0.5942 14 7 3.6283 0.6623 0.0054 15 6 3.6218 -0.6929 -0.0008 16 6 4.8433 -1.5754 -0.0014 17 8 5.5629 -1.3935 1.2198 18 14 4.3220 -3.3574 -0.1554 19 6 2.3379 -1.1248 -0.0005 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 3.7500 3.2867 -0.0004 24 1 1.9347 6.4681 1.5004 25 1 2.6144 4.9355 2.2007 26 1 5.3627 5.0923 2.0058 27 1 4.0814 5.3968 -1.3060 28 1 2.9682 6.7924 -0.9717 29 1 4.4191 1.2242 0.0105 30 1 5.4830 -1.3099 -0.8430 31 1 5.0538 -1.6114 2.0126 32 1 3.5453 -3.5531 -1.4059 33 1 5.5176 -4.2381 -0.1565 34 1 2.0135 -2.1549 0.0000 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_13940406.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:01:51 Heat of formation + Delta-G solvation = -48.713653 kcal Electronic energy + Delta-G solvation = -18974.293313 eV Core-core repulsion = 15875.181775 eV Total energy + Delta-G solvation = -3099.111538 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.64067 -41.12618 -39.45070 -37.70199 -36.14048 -34.30213 -33.35353 -31.54370 -28.22937 -27.23703 -26.81914 -25.21722 -22.77710 -21.62204 -20.80046 -20.37699 -19.61810 -18.38023 -17.91453 -17.12844 -16.76996 -16.60754 -15.97161 -15.91536 -15.42157 -15.31990 -14.93828 -14.72004 -14.32116 -13.97929 -13.70517 -13.64610 -13.55138 -13.51840 -13.00321 -12.71865 -12.38492 -12.19317 -12.01105 -11.52465 -11.17116 -10.74825 -10.66485 -10.23276 -9.84738 -9.22802 -4.91926 0.26634 1.22249 1.50413 1.72110 1.89608 1.97711 2.19774 2.20269 3.06793 3.43054 3.45657 3.56074 3.63940 3.79585 3.81543 4.09919 4.12382 4.19839 4.40285 4.65154 4.67988 4.69591 4.75256 4.76853 4.82054 4.89937 4.92584 4.97995 5.14755 5.32042 5.46666 5.62165 5.83874 6.27277 6.44342 6.66543 6.78005 7.03417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.084 4.084 3 C -0.074 4.074 4 C 0.585 3.415 5 O -0.564 6.564 6 N -0.698 5.698 7 C 0.109 3.891 8 H 0.088 0.912 9 C -0.180 4.180 10 C 0.083 3.917 11 H 0.091 0.909 12 O -0.570 6.570 13 C -0.136 4.136 14 N -0.515 5.515 15 C 0.033 3.967 16 C -0.057 4.057 17 O -0.554 6.554 18 Si 0.807 3.193 19 C -0.206 4.206 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.408 0.592 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.399 0.601 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.425 0.575 30 H 0.114 0.886 31 H 0.399 0.601 32 H -0.285 1.285 33 H -0.293 1.293 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 0.689 2.778 4.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.187 4.187 4 C 0.375 3.625 5 O -0.443 6.443 6 N -0.349 5.349 7 C 0.004 3.996 8 H 0.107 0.893 9 C -0.219 4.219 10 C 0.024 3.976 11 H 0.109 0.891 12 O -0.379 6.379 13 C -0.174 4.174 14 N -0.112 5.112 15 C -0.086 4.086 16 C -0.166 4.166 17 O -0.362 6.362 18 Si 0.711 3.289 19 C -0.230 4.230 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.245 0.755 24 H 0.131 0.869 25 H 0.084 0.916 26 H 0.250 0.750 27 H 0.094 0.906 28 H 0.147 0.853 29 H 0.264 0.736 30 H 0.132 0.868 31 H 0.249 0.751 32 H -0.212 1.212 33 H -0.220 1.220 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.512 0.334 1.308 2.852 hybrid contribution 1.034 1.079 0.221 1.511 sum 3.546 1.413 1.529 4.112 Atomic orbital electron populations 1.20341 0.88984 1.02830 1.02539 1.20196 0.96403 0.91179 1.01502 1.20160 0.84584 0.93087 1.20909 1.17284 0.85626 0.83832 0.75799 1.90798 1.17433 1.83801 1.52256 1.45506 1.09651 1.05312 1.74400 1.21950 0.99214 0.80177 0.98253 0.89343 1.24136 0.99212 1.01422 0.97093 1.22789 0.86663 0.92316 0.95838 0.89103 1.86300 1.55762 1.56558 1.39246 1.23503 0.96965 1.00528 0.96421 1.41868 1.06789 1.06891 1.55682 1.21372 0.97265 0.83231 1.06774 1.25112 0.91562 1.09487 0.90489 1.86477 1.42604 1.91256 1.15864 0.92957 0.79628 0.70691 0.85648 1.20856 0.90613 0.99599 1.11898 0.91033 0.92308 0.90051 0.75539 0.86935 0.91637 0.74976 0.90598 0.85306 0.73587 0.86826 0.75079 1.21196 1.22029 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.83 71.23 0.70 0.19 16 2 C -0.08 -0.52 6.21 -19.57 -0.12 -0.65 16 3 C -0.07 -0.48 7.06 40.35 0.28 -0.20 16 4 C 0.59 5.38 7.79 86.45 0.67 6.05 16 5 O -0.56 -8.95 14.40 -4.33 -0.06 -9.01 16 6 N -0.70 -2.39 5.15 -443.99 -2.29 -4.67 16 7 C 0.11 0.20 4.33 45.52 0.20 0.40 16 8 H 0.09 0.48 7.46 -2.39 -0.02 0.46 16 9 C -0.18 0.31 7.71 31.12 0.24 0.55 16 10 C 0.08 -0.36 5.28 31.12 0.16 -0.20 16 11 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 12 O -0.57 2.13 12.31 -148.98 -1.83 0.30 16 13 C -0.14 0.41 7.66 31.12 0.24 0.65 16 14 N -0.52 -0.53 5.99 -171.94 -1.03 -1.56 16 15 C 0.03 0.00 6.46 41.34 0.27 0.27 16 16 C -0.06 0.17 3.08 71.24 0.22 0.39 16 17 O -0.55 1.55 12.88 -148.98 -1.92 -0.36 16 18 Si 0.81 -3.45 30.56 68.60 2.10 -1.35 16 19 C -0.21 -0.26 9.27 22.01 0.20 -0.05 16 20 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 21 H 0.06 0.61 6.49 -2.39 -0.02 0.59 16 22 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 23 H 0.41 0.10 6.72 -92.71 -0.62 -0.52 16 24 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 26 H 0.40 -4.19 9.12 -74.06 -0.68 -4.86 16 27 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 29 H 0.42 -1.18 8.19 -92.71 -0.76 -1.94 16 30 H 0.11 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.40 -4.01 8.70 -74.06 -0.64 -4.66 16 32 H -0.29 -0.39 7.11 99.48 0.71 0.32 16 33 H -0.29 -0.72 7.11 99.48 0.71 -0.02 16 34 H 0.17 -0.68 6.19 -2.91 -0.02 -0.70 16 Total: 0.00 -19.15 287.99 -3.46 -22.62 By element: Atomic # 1 Polarization: -11.87 SS G_CDS: -1.49 Total: -13.36 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.07 Total: 7.40 kcal Atomic # 7 Polarization: -2.91 SS G_CDS: -3.32 Total: -6.23 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -3.82 Total: -9.07 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.10 Total: -1.35 kcal Total: -19.15 -3.46 -22.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_13940406.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.097 kcal (2) G-P(sol) polarization free energy of solvation -19.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds