Wall clock time and date at job start Sun Mar 7 2021 22:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47222 * 2 1 4 4 C 1.50697 * 109.46774 * 239.99933 * 2 1 3 5 5 C 1.34494 * 125.49354 * 149.97884 * 4 2 1 6 6 C 1.46751 * 106.36805 * 180.02562 * 5 4 2 7 7 C 1.47259 * 126.97302 * 179.97438 * 6 5 4 8 8 O 1.21625 * 120.00180 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00000 * 0.02581 * 7 6 5 10 10 C 1.46496 * 120.00475 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84555 * 334.66730 * 10 9 7 12 12 C 1.53777 * 113.61471 * 105.86225 * 10 9 7 13 13 C 1.54044 * 86.98500 * 89.16655 * 12 10 9 14 14 H 1.09006 * 113.70103 * 139.99250 * 13 12 10 15 15 O 1.42902 * 113.61234 * 270.88166 * 13 12 10 16 16 C 1.53773 * 87.08045 * 25.43108 * 13 12 10 17 17 C 1.36336 * 106.05683 * 359.97438 * 6 5 4 18 18 C 1.51004 * 126.78642 * 180.02562 * 17 6 5 19 19 C 1.53393 * 108.24810 * 164.27227 * 18 17 6 20 20 C 1.53190 * 109.03172 * 48.49090 * 19 18 17 21 21 C 1.53133 * 109.51886 * 290.41065 * 20 19 18 22 22 N 1.35203 * 108.66602 * 0.02562 * 17 6 5 23 23 H 0.96700 * 113.99930 * 59.99455 * 1 2 3 24 24 H 1.08998 * 109.46747 * 120.00246 * 2 1 3 25 25 H 1.48497 * 110.00208 * 60.00137 * 3 2 1 26 26 H 1.48494 * 110.00086 * 181.32277 * 3 2 1 27 27 H 1.07997 * 126.81757 * 359.97438 * 5 4 2 28 28 H 0.97001 * 119.99453 * 0.02562 * 9 7 6 29 29 H 1.08999 * 113.61448 * 203.66803 * 12 10 9 30 30 H 1.09001 * 113.61765 * 334.56964 * 12 10 9 31 31 H 0.96696 * 114.00130 * 277.49519 * 15 13 12 32 32 H 1.09006 * 113.61667 * 220.02519 * 16 13 12 33 33 H 1.08999 * 113.61565 * 89.11832 * 16 13 12 34 34 H 1.08993 * 109.70656 * 283.96090 * 18 17 6 35 35 H 1.09004 * 109.71023 * 44.54206 * 18 17 6 36 36 H 1.09004 * 109.54552 * 168.34571 * 19 18 17 37 37 H 1.09006 * 109.54473 * 288.52487 * 19 18 17 38 38 H 1.08998 * 109.45788 * 170.40297 * 20 19 18 39 39 H 1.09004 * 109.47287 * 50.42852 * 20 19 18 40 40 H 1.08999 * 109.56557 * 291.16548 * 21 20 19 41 41 H 1.08998 * 109.56037 * 170.82047 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 3.0854 -0.4461 -1.8683 6 6 3.1547 -1.3770 -3.0007 7 6 4.2322 -1.4783 -3.9993 8 8 4.1590 -2.3016 -4.8915 9 7 5.2995 -0.6587 -3.9246 10 6 6.3718 -0.7597 -4.9177 11 1 6.4377 -1.7492 -5.3700 12 6 6.3728 0.3872 -5.9420 13 6 7.2808 1.1534 -4.9614 14 1 8.0813 1.7099 -5.4491 15 8 6.5608 1.9379 -4.0084 16 6 7.7230 -0.2173 -4.4228 17 6 2.0192 -2.1291 -2.9406 18 6 1.6156 -3.2346 -3.8868 19 6 0.4954 -4.0476 -3.2256 20 6 -0.5699 -3.0862 -2.6894 21 6 -0.0051 -2.3108 -1.4958 22 7 1.2885 -1.7252 -1.8771 23 1 -0.3933 0.4418 -0.7650 24 1 1.7923 -0.5139 0.8900 25 1 1.5616 2.4678 1.2085 26 1 3.5346 1.7702 -0.0322 27 1 3.8158 0.3031 -1.6009 28 1 5.3580 -0.0023 -3.2127 29 1 6.8622 0.1326 -6.8820 30 1 5.3947 0.8470 -6.0837 31 1 6.2800 2.8012 -4.3414 32 1 7.8342 -0.2454 -3.3388 33 1 8.5808 -0.6370 -4.9483 34 1 1.2554 -2.8050 -4.8215 35 1 2.4715 -3.8799 -4.0845 36 1 0.0467 -4.7154 -3.9610 37 1 0.9066 -4.6338 -2.4037 38 1 -1.4448 -3.6539 -2.3725 39 1 -0.8561 -2.3864 -3.4745 40 1 0.1347 -2.9884 -0.6535 41 1 -0.6970 -1.5163 -1.2164 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_16915396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:03 Heat of formation + Delta-G solvation = -45.764629 kcal Electronic energy + Delta-G solvation = -24496.122774 eV Core-core repulsion = 20957.837737 eV Total energy + Delta-G solvation = -3538.285037 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.82158 -41.07620 -39.32980 -37.96303 -36.88039 -35.97234 -33.85552 -33.34029 -31.18182 -29.50553 -26.74019 -26.71165 -25.54401 -24.67087 -23.62947 -21.77957 -21.25031 -20.54629 -19.55246 -18.98415 -18.11745 -17.42480 -17.02849 -16.67963 -16.63041 -16.07241 -15.93841 -15.67517 -15.48300 -15.29543 -15.13620 -15.04534 -14.64645 -14.48479 -14.30631 -13.91691 -13.55556 -13.49320 -13.25175 -12.77074 -12.63388 -12.35339 -12.27441 -12.07329 -11.97735 -11.79980 -11.78812 -11.42366 -10.93499 -10.67773 -10.64112 -10.05183 -9.58305 -9.08329 -4.94154 0.68615 1.03899 1.36672 1.66026 1.81281 2.01754 2.36872 2.48873 3.16967 3.30308 3.45095 3.52667 3.57492 3.68836 3.78403 3.81046 3.82388 3.89115 4.11324 4.20477 4.32896 4.34147 4.40358 4.41961 4.61721 4.70508 4.74229 4.76474 4.79760 4.81807 4.85837 4.92138 4.96806 5.00452 5.02795 5.07163 5.16477 5.22143 5.64732 5.68815 6.00782 6.20639 6.58519 6.65759 6.90104 7.33413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.044 4.044 3 Si 0.797 3.203 4 C -0.008 4.008 5 C -0.173 4.173 6 C -0.258 4.258 7 C 0.587 3.413 8 O -0.590 6.590 9 N -0.695 5.695 10 C 0.110 3.890 11 H 0.082 0.918 12 C -0.180 4.180 13 C 0.085 3.915 14 H 0.091 0.909 15 O -0.568 6.568 16 C -0.138 4.138 17 C 0.108 3.892 18 C -0.053 4.053 19 C -0.125 4.125 20 C -0.133 4.133 21 C 0.094 3.906 22 N -0.423 5.423 23 H 0.395 0.605 24 H 0.112 0.888 25 H -0.290 1.290 26 H -0.280 1.280 27 H 0.157 0.843 28 H 0.411 0.589 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 3.992 -0.466 4.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.154 4.154 3 Si 0.700 3.300 4 C -0.117 4.117 5 C -0.197 4.197 6 C -0.268 4.268 7 C 0.378 3.622 8 O -0.473 6.473 9 N -0.346 5.346 10 C 0.005 3.995 11 H 0.100 0.900 12 C -0.219 4.219 13 C 0.026 3.974 14 H 0.109 0.891 15 O -0.376 6.376 16 C -0.176 4.176 17 C -0.011 4.011 18 C -0.091 4.091 19 C -0.163 4.163 20 C -0.170 4.170 21 C -0.025 4.025 22 N -0.099 5.099 23 H 0.246 0.754 24 H 0.129 0.871 25 H -0.217 1.217 26 H -0.206 1.206 27 H 0.174 0.826 28 H 0.248 0.752 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.250 0.750 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.903 3.073 0.403 3.637 hybrid contribution 0.295 -0.083 0.100 0.322 sum -1.608 2.990 0.503 3.432 Atomic orbital electron populations 1.86456 1.16970 1.81529 1.50757 1.24972 0.85166 1.10834 0.94438 0.93119 0.78356 0.74060 0.84461 1.20908 0.95837 0.95338 0.99603 1.21883 0.98616 1.02815 0.96374 1.19948 0.98281 1.06252 1.02312 1.17635 0.81535 0.79681 0.83379 1.90715 1.80027 1.38827 1.37692 1.45405 1.19879 1.37974 1.31325 1.21882 0.87724 0.99384 0.90554 0.90005 1.24168 1.01342 0.97605 0.98762 1.22801 0.93519 0.91738 0.89327 0.89142 1.86336 1.76227 1.34027 1.41041 1.23493 0.96715 0.94692 1.02663 1.20551 0.91438 0.97865 0.91241 1.20442 0.99452 0.93330 0.95835 1.21717 0.95476 0.98005 1.01106 1.21939 0.99167 0.98763 0.97136 1.22524 0.81897 0.99597 0.98490 1.44048 1.18002 1.26761 1.21049 0.75439 0.87057 1.21681 1.20604 0.82569 0.75179 0.87216 0.91603 0.75025 0.90723 0.85500 0.89761 0.90465 0.89114 0.91898 0.87329 0.90420 0.90195 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.07 10.28 -148.98 -1.53 0.54 16 2 C -0.04 0.08 3.00 71.24 0.21 0.29 16 3 Si 0.80 -2.68 31.29 68.60 2.15 -0.53 16 4 C -0.01 -0.02 6.15 40.99 0.25 0.24 16 5 C -0.17 -0.76 9.09 23.64 0.21 -0.55 16 6 C -0.26 -2.39 6.28 -19.12 -0.12 -2.51 16 7 C 0.59 7.24 7.81 86.61 0.68 7.91 16 8 O -0.59 -10.86 14.95 -4.11 -0.06 -10.92 16 9 N -0.70 -4.90 5.13 -443.47 -2.28 -7.18 16 10 C 0.11 0.51 4.29 45.52 0.20 0.70 16 11 H 0.08 0.68 7.50 -2.39 -0.02 0.66 16 12 C -0.18 -0.07 7.73 31.21 0.24 0.17 16 13 C 0.09 -0.20 5.28 31.21 0.16 -0.04 16 14 H 0.09 -0.55 8.14 -2.38 -0.02 -0.56 16 15 O -0.57 0.95 12.34 -148.98 -1.84 -0.88 16 16 C -0.14 0.09 7.65 31.12 0.24 0.33 16 17 C 0.11 0.77 6.57 41.69 0.27 1.05 16 18 C -0.05 -0.28 5.32 30.08 0.16 -0.12 16 19 C -0.13 0.11 5.98 30.79 0.18 0.29 16 20 C -0.13 0.60 5.92 30.70 0.18 0.78 16 21 C 0.09 -0.26 6.22 86.32 0.54 0.27 16 22 N -0.42 -1.10 3.11 -493.60 -1.54 -2.63 16 23 H 0.40 -4.30 8.27 -74.06 -0.61 -4.92 16 24 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 25 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 26 H -0.28 -0.39 6.77 99.48 0.67 0.28 16 27 H 0.16 0.26 6.30 -2.91 -0.02 0.24 16 28 H 0.41 1.93 6.76 -92.71 -0.63 1.31 16 29 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.40 -3.64 9.12 -74.06 -0.68 -4.31 16 32 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.13 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 0.74 7.40 -2.38 -0.02 0.72 16 36 H 0.09 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.06 0.02 8.12 -2.38 -0.02 0.00 16 38 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.08 -0.34 8.11 -2.39 -0.02 -0.36 16 40 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.12 -0.76 5.68 -2.39 -0.01 -0.77 16 Total: 0.00 -19.79 326.77 -2.52 -22.31 By element: Atomic # 1 Polarization: -8.68 SS G_CDS: -0.83 Total: -9.51 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 3.41 Total: 8.82 kcal Atomic # 7 Polarization: -6.00 SS G_CDS: -3.81 Total: -9.81 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -3.43 Total: -11.27 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.15 Total: -0.53 kcal Total: -19.79 -2.52 -22.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_16915396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.459 kcal (2) G-P(sol) polarization free energy of solvation -19.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds