Wall clock time and date at job start Sun Mar 7 2021 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46949 * 2 1 4 4 C 1.50696 * 109.47412 * 239.99523 * 2 1 3 5 5 C 1.38244 * 119.97351 * 120.00171 * 4 2 1 6 6 C 1.38281 * 120.11281 * 180.02562 * 5 4 2 7 7 C 1.38118 * 120.05778 * 0.02562 * 6 5 4 8 8 C 1.38751 * 119.94321 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05450 * 180.02562 * 8 7 6 10 10 C 1.42895 * 117.00446 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47569 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46753 * 180.02562 * 12 11 10 14 14 O 1.21277 * 119.99880 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99639 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00223 * 179.97438 * 15 13 12 17 17 H 1.09003 * 112.84397 * 23.80601 * 16 15 13 18 18 C 1.53777 * 113.61815 * 154.99964 * 16 15 13 19 19 C 1.53781 * 87.08184 * 89.11977 * 18 16 15 20 20 H 1.08993 * 113.61848 * 140.06592 * 19 18 16 21 21 O 1.42905 * 113.61237 * 270.88724 * 19 18 16 22 22 C 1.53779 * 113.61596 * 252.50103 * 16 15 13 23 23 C 1.38165 * 119.97010 * 300.25486 * 4 2 1 24 24 H 0.96693 * 114.00419 * 300.00057 * 1 2 3 25 25 H 1.09004 * 109.47072 * 119.99533 * 2 1 3 26 26 H 1.48507 * 109.99832 * 178.68093 * 3 2 1 27 27 H 1.48506 * 109.99555 * 299.99461 * 3 2 1 28 28 H 1.08003 * 119.94061 * 359.97438 * 5 4 2 29 29 H 1.08000 * 119.96974 * 179.97438 * 6 5 4 30 30 H 1.08003 * 120.02730 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.46672 * 59.99962 * 10 9 8 32 32 H 1.09006 * 109.47158 * 300.00755 * 10 9 8 33 33 H 1.09000 * 109.46782 * 60.00442 * 11 10 9 34 34 H 1.08995 * 109.47059 * 300.00625 * 11 10 9 35 35 H 1.09000 * 109.47014 * 60.00461 * 12 11 10 36 36 H 1.08997 * 109.46812 * 300.00208 * 12 11 10 37 37 H 0.97005 * 120.00050 * 0.02562 * 15 13 12 38 38 H 1.09003 * 113.61452 * 334.57116 * 18 16 15 39 39 H 1.09002 * 113.69501 * 203.67885 * 18 16 15 40 40 H 0.96696 * 114.00036 * 179.97438 * 21 19 18 41 41 H 1.09001 * 113.61225 * 156.33047 * 22 16 15 42 42 H 1.08998 * 113.61260 * 25.43058 * 22 16 15 43 43 H 1.07995 * 120.03120 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7262 -0.0382 -2.1400 6 6 3.1883 -0.6872 -3.2702 7 6 2.8563 -2.0092 -3.4933 8 6 2.0587 -2.6862 -2.5819 9 8 1.7311 -3.9871 -2.7988 10 6 2.2421 -4.5955 -3.9865 11 6 1.7718 -6.0497 -4.0577 12 6 2.3195 -6.7013 -5.3291 13 6 1.8557 -8.1334 -5.3994 14 8 1.1557 -8.5880 -4.5196 15 7 2.2181 -8.9087 -6.4406 16 6 1.7678 -10.3011 -6.5088 17 1 0.8580 -10.4801 -5.9357 18 6 1.7150 -10.8622 -7.9396 19 6 3.1790 -11.2895 -7.7418 20 1 3.4094 -12.2672 -8.1649 21 8 4.1241 -10.2856 -8.1172 22 6 2.8830 -11.3234 -6.2331 23 6 1.5929 -2.0317 -1.4509 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 3.5346 1.7703 0.0321 27 1 1.5614 2.4678 -1.2086 28 1 2.9859 0.9960 -1.9680 29 1 3.8088 -0.1596 -3.9795 30 1 3.2172 -2.5154 -4.3764 31 1 3.3316 -4.5668 -3.9695 32 1 1.8779 -4.0523 -4.8586 33 1 0.6823 -6.0788 -4.0745 34 1 2.1363 -6.5925 -3.1856 35 1 3.4090 -6.6722 -5.3119 36 1 1.9553 -6.1585 -6.2013 37 1 2.7777 -8.5449 -7.1445 38 1 1.5832 -10.0966 -8.7042 39 1 1.0276 -11.6999 -8.0565 40 1 5.0466 -10.5483 -7.9948 41 1 2.5146 -12.2873 -5.8820 42 1 3.6939 -10.9302 -5.6201 43 1 0.9690 -2.5555 -0.7419 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_4549616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:20 Heat of formation + Delta-G solvation = -106.283910 kcal Electronic energy + Delta-G solvation = -24219.527668 eV Core-core repulsion = 20425.362037 eV Total energy + Delta-G solvation = -3794.165631 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46967 -41.28397 -39.76859 -39.15383 -37.36974 -36.06550 -34.96885 -33.81148 -32.68232 -31.38027 -28.56010 -26.89201 -26.78545 -25.37778 -23.82975 -23.45279 -21.87390 -21.48253 -20.58200 -19.04119 -18.60991 -18.42319 -17.88624 -17.55014 -17.50567 -17.09060 -16.97193 -16.44874 -16.12072 -15.89435 -15.41832 -15.30405 -14.94250 -14.67391 -14.64126 -14.36681 -14.10706 -13.74818 -13.63604 -13.46043 -13.26434 -13.21592 -12.69431 -12.63425 -12.48718 -12.34934 -12.30954 -12.11160 -11.78532 -11.68103 -11.47017 -11.02539 -10.69702 -10.43850 -10.07905 -9.96954 -9.38929 -4.93731 0.07642 0.23756 1.27494 1.54304 1.64870 1.85477 1.97009 2.30145 2.51716 3.11093 3.37004 3.48036 3.55206 3.68197 3.75074 3.79055 3.81659 3.82959 3.85022 3.96511 4.08694 4.13705 4.15498 4.28552 4.31299 4.34937 4.40440 4.56459 4.58348 4.69859 4.71950 4.80865 4.85545 4.88075 4.95047 4.95861 5.02587 5.06997 5.15796 5.21098 5.29677 5.56895 5.58043 6.31352 6.51252 6.83832 6.87910 7.21069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.089 4.089 3 Si 0.788 3.212 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.122 3.878 9 O -0.333 6.333 10 C 0.056 3.944 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.508 3.492 14 O -0.591 6.591 15 N -0.697 5.697 16 C 0.107 3.893 17 H 0.079 0.921 18 C -0.136 4.136 19 C 0.085 3.915 20 H 0.088 0.912 21 O -0.566 6.566 22 C -0.182 4.182 23 C -0.146 4.146 24 H 0.404 0.596 25 H 0.092 0.908 26 H -0.285 1.285 27 H -0.295 1.295 28 H 0.122 0.878 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.418 0.582 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.399 0.601 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 0.176 -2.917 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.197 4.197 3 Si 0.693 3.307 4 C -0.053 4.053 5 C -0.201 4.201 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.077 3.923 9 O -0.247 6.247 10 C -0.018 4.018 11 C -0.138 4.138 12 C -0.166 4.166 13 C 0.296 3.704 14 O -0.471 6.471 15 N -0.349 5.349 16 C 0.001 3.999 17 H 0.098 0.902 18 C -0.174 4.174 19 C 0.025 3.975 20 H 0.106 0.894 21 O -0.375 6.375 22 C -0.221 4.221 23 C -0.165 4.165 24 H 0.255 0.745 25 H 0.110 0.890 26 H -0.212 1.212 27 H -0.223 1.223 28 H 0.139 0.861 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.054 0.307 -3.298 5.235 hybrid contribution 0.688 -0.899 -0.312 1.174 sum 4.742 -0.592 -3.610 5.990 Atomic orbital electron populations 1.86447 1.17193 1.82528 1.51352 1.25016 0.85991 1.11817 0.96917 0.94307 0.77182 0.74554 0.84658 1.19519 0.96526 0.93255 0.95968 1.20992 1.02773 0.99677 0.96686 1.21218 0.97536 0.94017 0.96346 1.21583 1.02921 0.96381 1.01529 1.19198 0.94671 0.83710 0.94720 1.86057 1.71555 1.22442 1.44685 1.23025 0.99787 0.93220 0.85760 1.21135 1.01661 0.92777 0.98204 1.21520 1.04549 0.90586 0.99983 1.21206 0.79065 0.89223 0.80875 1.90718 1.39960 1.76272 1.40163 1.45656 1.52940 1.11265 1.25027 1.21886 0.97844 0.81638 0.98544 0.90233 1.23473 0.96032 1.02466 0.95455 1.22746 0.89826 0.91792 0.93099 0.89433 1.86311 1.20398 1.42739 1.88027 1.24133 0.99238 1.00271 0.98495 1.20366 1.03558 0.94572 0.98019 0.74474 0.88977 1.21184 1.22335 0.86107 0.82675 0.82349 0.89682 0.89904 0.92041 0.91932 0.85597 0.85669 0.74441 0.90180 0.85871 0.74983 0.87581 0.91476 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.63 12.74 -148.98 -1.90 -3.53 16 2 C -0.09 -0.21 2.81 71.23 0.20 -0.01 16 3 Si 0.79 -0.63 29.79 68.60 2.04 1.41 16 4 C -0.05 -0.43 5.42 -19.88 -0.11 -0.54 16 5 C -0.18 -1.28 8.67 22.28 0.19 -1.08 16 6 C -0.07 -0.27 10.04 22.25 0.22 -0.05 16 7 C -0.21 -0.75 9.04 22.36 0.20 -0.55 16 8 C 0.12 1.03 6.69 22.51 0.15 1.18 16 9 O -0.33 -2.78 10.14 -92.44 -0.94 -3.72 16 10 C 0.06 0.00 4.74 71.98 0.34 0.34 16 11 C -0.10 -0.23 4.87 30.60 0.15 -0.08 16 12 C -0.13 0.43 5.70 29.85 0.17 0.60 16 13 C 0.51 2.33 7.83 87.66 0.69 3.02 16 14 O -0.59 -8.75 15.58 -3.02 -0.05 -8.80 16 15 N -0.70 -0.31 5.15 -440.05 -2.27 -2.58 16 16 C 0.11 0.13 4.32 45.52 0.20 0.33 16 17 H 0.08 0.47 7.46 -2.39 -0.02 0.45 16 18 C -0.14 0.48 7.66 31.12 0.24 0.72 16 19 C 0.08 -0.41 5.28 31.12 0.16 -0.24 16 20 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 21 O -0.57 2.78 12.31 -148.98 -1.83 0.95 16 22 C -0.18 0.35 7.71 31.12 0.24 0.59 16 23 C -0.15 -1.48 9.55 22.37 0.21 -1.26 16 24 H 0.40 -3.34 8.74 -74.06 -0.65 -3.99 16 25 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 26 H -0.28 -1.11 7.11 99.48 0.71 -0.40 16 27 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 28 H 0.12 0.66 4.87 -2.91 -0.01 0.65 16 29 H 0.16 -0.34 8.06 -2.91 -0.02 -0.37 16 30 H 0.16 -0.44 6.30 -2.91 -0.02 -0.46 16 31 H 0.09 -0.35 7.66 -2.38 -0.02 -0.37 16 32 H 0.08 -0.30 7.66 -2.38 -0.02 -0.31 16 33 H 0.06 0.41 8.10 -2.39 -0.02 0.39 16 34 H 0.06 0.40 8.10 -2.39 -0.02 0.38 16 35 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 36 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.42 -1.49 7.59 -92.70 -0.70 -2.19 16 38 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.40 -4.70 9.12 -74.06 -0.68 -5.37 16 41 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 Total: 0.00 -26.64 356.93 -2.62 -29.26 By element: Atomic # 1 Polarization: -15.02 SS G_CDS: -0.94 Total: -15.96 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 3.26 Total: 2.96 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: -2.27 Total: -2.58 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -4.72 Total: -15.10 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.04 Total: 1.41 kcal Total: -26.64 -2.62 -29.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.022 kcal (2) G-P(sol) polarization free energy of solvation -26.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds