Wall clock time and date at job start Sun Mar 7 2021 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46874 * 2 1 4 4 C 1.50703 * 109.46799 * 240.00019 * 2 1 3 5 5 C 1.38245 * 119.96821 * 120.02638 * 4 2 1 6 6 C 1.38283 * 120.11018 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.05447 * 359.67056 * 6 5 4 8 8 C 1.38752 * 119.94166 * 0.59763 * 7 6 5 9 9 O 1.35901 * 120.05361 * 179.69580 * 8 7 6 10 10 C 1.42897 * 117.00125 * 359.73245 * 9 8 7 11 11 C 1.50696 * 109.47434 * 179.97438 * 10 9 8 12 12 C 1.38342 * 119.92968 * 270.02707 * 11 10 9 13 13 C 1.38381 * 120.29151 * 180.02562 * 12 11 10 14 14 C 1.37937 * 120.14674 * 359.73568 * 13 12 11 15 15 C 1.39594 * 119.85016 * 0.48947 * 14 13 12 16 16 C 1.47849 * 120.14358 * 179.79024 * 15 14 13 17 17 O 1.21549 * 120.00447 * 179.72599 * 16 15 14 18 18 N 1.34779 * 119.99857 * 359.72011 * 16 15 14 19 19 C 1.46493 * 119.99972 * 180.02562 * 18 16 15 20 20 H 1.08999 * 112.85186 * 23.80514 * 19 18 16 21 21 C 1.53780 * 113.61508 * 155.00578 * 19 18 16 22 22 C 1.53780 * 87.08396 * 89.20156 * 21 19 18 23 23 H 1.08994 * 113.61948 * 140.06716 * 22 21 19 24 24 O 1.42903 * 113.61476 * 270.88897 * 22 21 19 25 25 C 1.53786 * 87.17287 * 25.47227 * 22 21 19 26 26 C 1.37984 * 119.92781 * 89.99803 * 11 10 9 27 27 C 1.38162 * 119.97382 * 299.99482 * 4 2 1 28 28 H 0.96697 * 114.00528 * 59.99872 * 1 2 3 29 29 H 1.08997 * 109.46791 * 119.99802 * 2 1 3 30 30 H 1.48501 * 109.99967 * 298.67929 * 3 2 1 31 31 H 1.48501 * 109.99863 * 60.00297 * 3 2 1 32 32 H 1.08001 * 119.94299 * 359.96819 * 5 4 2 33 33 H 1.07997 * 119.97269 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.02502 * 180.32875 * 7 6 5 35 35 H 1.09003 * 109.47215 * 59.99601 * 10 9 8 36 36 H 1.09002 * 109.47111 * 299.99972 * 10 9 8 37 37 H 1.08003 * 119.85303 * 0.02562 * 12 11 10 38 38 H 1.07995 * 119.92310 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.07324 * 180.28225 * 14 13 12 40 40 H 0.96996 * 119.99700 * 0.02562 * 18 16 15 41 41 H 1.09004 * 113.61516 * 334.65419 * 21 19 18 42 42 H 1.09002 * 113.69428 * 203.75916 * 21 19 18 43 43 H 0.96700 * 114.00311 * 178.46989 * 24 22 21 44 44 H 1.09005 * 113.60962 * 89.07883 * 25 22 21 45 45 H 1.08997 * 113.61757 * 219.97833 * 25 22 21 46 46 H 1.08004 * 120.06912 * 359.97438 * 26 11 10 47 47 H 1.08000 * 120.03000 * 0.04865 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7265 -0.0381 -2.1398 6 6 3.1885 -0.6870 -3.2702 7 6 2.8620 -2.0111 -3.4899 8 6 2.0594 -2.6864 -2.5816 9 8 1.7317 -3.9873 -2.7986 10 6 2.2435 -4.5959 -3.9859 11 6 1.7801 -6.0281 -4.0562 12 6 2.5465 -7.0302 -3.4885 13 6 2.1284 -8.3479 -3.5492 14 6 0.9406 -8.6698 -4.1722 15 6 0.1649 -7.6640 -4.7512 16 6 -1.1071 -8.0023 -5.4247 17 8 -1.7830 -7.1239 -5.9237 18 7 -1.5171 -9.2848 -5.4855 19 6 -2.7771 -9.6201 -6.1534 20 1 -3.0765 -8.8754 -6.8909 21 6 -2.8303 -11.0642 -6.6794 22 6 -3.3940 -11.4608 -5.3047 23 1 -4.1904 -12.2032 -5.3570 24 8 -2.3868 -11.7940 -4.3473 25 6 -3.9059 -10.0158 -5.1826 26 6 0.5920 -6.3371 -4.6862 27 6 1.5972 -2.0332 -1.4485 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4585 -1.2243 31 1 1.5614 2.4678 1.2085 32 1 2.9864 0.9959 -1.9676 33 1 3.8092 -0.1595 -3.9793 34 1 3.2275 -2.5189 -4.3703 35 1 3.3330 -4.5673 -3.9682 36 1 1.8800 -4.0528 -4.8583 37 1 3.4752 -6.7829 -2.9958 38 1 2.7311 -9.1254 -3.1036 39 1 0.6132 -9.6981 -4.2149 40 1 -0.9778 -9.9857 -5.0871 41 1 -1.8485 -11.4894 -6.8878 42 1 -3.5356 -11.2064 -7.4981 43 1 -2.7341 -12.0217 -3.4741 44 1 -4.9054 -9.8706 -5.5926 45 1 -3.7920 -9.5952 -4.1835 46 1 -0.0058 -5.5537 -5.1283 47 1 0.9757 -2.5579 -0.7380 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_4549630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:24 Heat of formation + Delta-G solvation = -63.027108 kcal Electronic energy + Delta-G solvation = -30006.280348 eV Core-core repulsion = 25701.085911 eV Total energy + Delta-G solvation = -4305.194437 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63151 -41.26216 -40.39055 -39.32506 -38.72385 -37.29195 -36.12885 -34.31943 -33.10030 -32.44315 -32.10677 -30.99251 -27.78674 -26.87872 -26.61354 -26.17418 -24.33364 -23.63490 -23.15003 -22.16293 -21.35230 -20.65727 -19.21160 -19.04922 -18.20922 -17.84710 -17.47048 -17.21917 -17.16081 -16.91937 -16.77033 -16.36626 -16.16649 -15.94212 -15.76721 -15.53617 -15.30135 -15.13535 -14.87198 -14.70316 -14.44209 -14.07060 -14.01350 -13.69793 -13.66708 -13.46467 -13.39159 -12.94580 -12.83068 -12.70368 -12.53686 -12.42126 -12.18362 -11.99453 -11.92052 -11.56685 -11.55147 -10.93768 -10.80207 -10.63442 -10.15244 -10.05292 -9.91563 -9.89392 -9.21029 -4.93383 -0.24946 0.15362 0.23868 0.44524 1.29461 1.63051 1.74639 1.97997 2.05422 2.30419 2.70234 2.88179 2.91894 3.38313 3.39003 3.50636 3.53269 3.66342 3.67467 3.72928 3.76204 3.83776 3.97730 4.00638 4.02890 4.03737 4.14185 4.21809 4.23653 4.42705 4.44847 4.56292 4.58371 4.59170 4.66006 4.67328 4.73871 4.79717 4.86048 4.90210 4.93444 5.00385 5.18655 5.24628 5.29470 5.35833 5.40099 5.46910 5.55963 5.70885 5.73933 6.40742 6.43100 6.46664 6.58159 7.24379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.077 4.077 3 Si 0.689 3.311 4 C -0.079 4.079 5 C -0.155 4.155 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.131 3.869 9 O -0.307 6.307 10 C 0.102 3.898 11 C -0.105 4.105 12 C -0.067 4.067 13 C -0.128 4.128 14 C -0.073 4.073 15 C -0.138 4.138 16 C 0.561 3.439 17 O -0.536 6.536 18 N -0.702 5.702 19 C 0.124 3.876 20 H 0.105 0.895 21 C -0.142 4.142 22 C 0.077 3.923 23 H 0.072 0.928 24 O -0.555 6.555 25 C -0.186 4.186 26 C -0.034 4.034 27 C -0.125 4.125 28 H 0.377 0.623 29 H 0.120 0.880 30 H -0.260 1.260 31 H -0.257 1.257 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.407 0.593 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.386 0.614 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.138 0.862 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -3.689 -0.574 5.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.080 4.080 5 C -0.173 4.173 6 C -0.091 4.091 7 C -0.223 4.223 8 C 0.086 3.914 9 O -0.221 6.221 10 C 0.027 3.973 11 C -0.105 4.105 12 C -0.085 4.085 13 C -0.146 4.146 14 C -0.092 4.092 15 C -0.142 4.142 16 C 0.348 3.652 17 O -0.413 6.413 18 N -0.354 5.354 19 C 0.019 3.981 20 H 0.123 0.877 21 C -0.179 4.179 22 C 0.018 3.982 23 H 0.090 0.910 24 O -0.362 6.362 25 C -0.225 4.225 26 C -0.053 4.053 27 C -0.144 4.144 28 H 0.224 0.776 29 H 0.138 0.862 30 H -0.185 1.185 31 H -0.182 1.182 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.245 0.755 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.234 0.766 44 H 0.119 0.881 45 H 0.096 0.904 46 H 0.156 0.844 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.266 -2.563 -0.783 4.225 hybrid contribution -1.101 -0.750 -0.078 1.334 sum 2.165 -3.313 -0.861 4.050 Atomic orbital electron populations 1.86607 1.17538 1.79996 1.49314 1.25092 0.84107 1.11106 0.98319 0.94935 0.91687 0.74169 0.80194 1.20083 0.97544 0.93798 0.96547 1.20920 1.00865 1.00033 0.95478 1.20913 0.97873 0.93649 0.96650 1.21334 1.03397 0.96524 1.01092 1.19019 0.94482 0.83432 0.94472 1.86171 1.70905 1.22427 1.42634 1.21594 0.98732 0.89895 0.87035 1.19403 0.96082 0.93797 1.01267 1.21329 0.99270 0.92494 0.95417 1.21138 0.96639 0.96624 1.00181 1.21421 0.94036 0.98770 0.94982 1.19871 0.96176 0.94559 1.03549 1.18271 0.85079 0.82584 0.79224 1.90789 1.56346 1.47397 1.46792 1.45569 1.23347 1.08312 1.58197 1.21817 0.84151 0.97011 0.95154 0.87679 1.23450 1.03400 0.95034 0.96064 1.22805 0.90411 0.94913 0.90116 0.90972 1.86341 1.34957 1.90462 1.24394 1.24197 0.99431 0.97318 1.01533 1.21176 0.93843 0.95660 0.94602 1.20258 1.03064 0.93974 0.97099 0.77575 0.86213 1.18487 1.18238 0.85389 0.85167 0.85190 0.90575 0.90670 0.85055 0.84724 0.85205 0.75512 0.89815 0.87099 0.76604 0.88141 0.90368 0.84370 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.12 12.77 -35.23 -0.45 -1.57 16 2 C -0.08 -0.04 2.82 36.01 0.10 0.06 16 3 Si 0.69 -0.39 29.79 -169.99 -5.06 -5.45 16 4 C -0.08 -0.09 5.39 -104.65 -0.56 -0.65 16 5 C -0.16 -0.02 8.67 -39.56 -0.34 -0.36 16 6 C -0.07 0.01 10.04 -39.60 -0.40 -0.39 16 7 C -0.20 -0.12 9.04 -39.43 -0.36 -0.48 16 8 C 0.13 0.30 6.69 -39.22 -0.26 0.04 16 9 O -0.31 -0.82 10.12 -19.43 -0.20 -1.02 16 10 C 0.10 0.01 4.86 36.00 0.17 0.19 16 11 C -0.11 -0.10 5.50 -104.68 -0.58 -0.67 16 12 C -0.07 0.02 9.69 -39.49 -0.38 -0.36 16 13 C -0.13 0.11 10.03 -39.64 -0.40 -0.29 16 14 C -0.07 0.01 9.54 -39.19 -0.37 -0.36 16 15 C -0.14 -0.30 5.87 -104.97 -0.62 -0.92 16 16 C 0.56 2.07 7.77 -12.33 -0.10 1.97 16 17 O -0.54 -3.87 15.95 5.32 0.08 -3.78 16 18 N -0.70 -0.81 5.11 -53.82 -0.27 -1.08 16 19 C 0.12 0.07 4.33 -66.98 -0.29 -0.22 16 20 H 0.11 0.20 7.46 -51.93 -0.39 -0.19 16 21 C -0.14 0.21 7.66 -25.92 -0.20 0.01 16 22 C 0.08 -0.13 5.27 -25.92 -0.14 -0.27 16 23 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 24 O -0.56 0.89 12.32 -35.23 -0.43 0.46 16 25 C -0.19 0.14 7.73 -25.77 -0.20 -0.06 16 26 C -0.03 -0.08 9.24 -39.18 -0.36 -0.44 16 27 C -0.13 -0.31 9.55 -39.44 -0.38 -0.68 16 28 H 0.38 -0.24 8.70 45.56 0.40 0.16 16 29 H 0.12 -0.03 7.96 -51.93 -0.41 -0.44 16 30 H -0.26 -0.37 7.11 56.52 0.40 0.04 16 31 H -0.26 -0.70 7.11 56.52 0.40 -0.30 16 32 H 0.13 -0.22 4.87 -52.49 -0.26 -0.47 16 33 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 34 H 0.13 -0.17 6.30 -52.48 -0.33 -0.50 16 35 H 0.08 -0.13 7.59 -51.93 -0.39 -0.53 16 36 H 0.08 -0.06 7.62 -51.93 -0.40 -0.45 16 37 H 0.13 -0.28 8.06 -52.48 -0.42 -0.71 16 38 H 0.13 -0.41 8.06 -52.49 -0.42 -0.84 16 39 H 0.13 -0.29 6.41 -52.49 -0.34 -0.63 16 40 H 0.41 -0.15 5.63 -40.82 -0.23 -0.38 16 41 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.11 -0.33 8.14 -51.93 -0.42 -0.76 16 43 H 0.39 -1.90 9.12 45.56 0.42 -1.48 16 44 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 45 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 46 H 0.14 0.40 7.65 -52.48 -0.40 0.00 16 47 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 392.22 15.07 5.91 5.91 Total: 0.00 -9.40 392.22 -11.41 -20.81 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -5.34 Total: -10.37 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -5.65 Total: -3.90 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -0.27 Total: -1.08 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -1.00 Total: -5.92 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.06 Total: -5.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -9.40 -11.41 -20.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.219 kcal (2) G-P(sol) polarization free energy of solvation -9.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds