Wall clock time and date at job start Sun Mar 7 2021 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46874 * 2 1 4 4 C 1.50703 * 109.46799 * 240.00019 * 2 1 3 5 5 C 1.38245 * 119.96821 * 120.02638 * 4 2 1 6 6 C 1.38283 * 120.11018 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.05447 * 359.67056 * 6 5 4 8 8 C 1.38752 * 119.94166 * 0.59763 * 7 6 5 9 9 O 1.35901 * 120.05361 * 179.69580 * 8 7 6 10 10 C 1.42897 * 117.00125 * 359.73245 * 9 8 7 11 11 C 1.50696 * 109.47434 * 179.97438 * 10 9 8 12 12 C 1.38342 * 119.92968 * 270.02707 * 11 10 9 13 13 C 1.38381 * 120.29151 * 180.02562 * 12 11 10 14 14 C 1.37937 * 120.14674 * 359.73568 * 13 12 11 15 15 C 1.39594 * 119.85016 * 0.48947 * 14 13 12 16 16 C 1.47849 * 120.14358 * 179.79024 * 15 14 13 17 17 O 1.21549 * 120.00447 * 179.72599 * 16 15 14 18 18 N 1.34779 * 119.99857 * 359.72011 * 16 15 14 19 19 C 1.46493 * 119.99972 * 180.02562 * 18 16 15 20 20 H 1.08999 * 112.85186 * 23.80514 * 19 18 16 21 21 C 1.53780 * 113.61508 * 155.00578 * 19 18 16 22 22 C 1.53780 * 87.08396 * 89.20156 * 21 19 18 23 23 H 1.08994 * 113.61948 * 140.06716 * 22 21 19 24 24 O 1.42903 * 113.61476 * 270.88897 * 22 21 19 25 25 C 1.53786 * 87.17287 * 25.47227 * 22 21 19 26 26 C 1.37984 * 119.92781 * 89.99803 * 11 10 9 27 27 C 1.38162 * 119.97382 * 299.99482 * 4 2 1 28 28 H 0.96697 * 114.00528 * 59.99872 * 1 2 3 29 29 H 1.08997 * 109.46791 * 119.99802 * 2 1 3 30 30 H 1.48501 * 109.99967 * 298.67929 * 3 2 1 31 31 H 1.48501 * 109.99863 * 60.00297 * 3 2 1 32 32 H 1.08001 * 119.94299 * 359.96819 * 5 4 2 33 33 H 1.07997 * 119.97269 * 179.97438 * 6 5 4 34 34 H 1.08006 * 120.02502 * 180.32875 * 7 6 5 35 35 H 1.09003 * 109.47215 * 59.99601 * 10 9 8 36 36 H 1.09002 * 109.47111 * 299.99972 * 10 9 8 37 37 H 1.08003 * 119.85303 * 0.02562 * 12 11 10 38 38 H 1.07995 * 119.92310 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.07324 * 180.28225 * 14 13 12 40 40 H 0.96996 * 119.99700 * 0.02562 * 18 16 15 41 41 H 1.09004 * 113.61516 * 334.65419 * 21 19 18 42 42 H 1.09002 * 113.69428 * 203.75916 * 21 19 18 43 43 H 0.96700 * 114.00311 * 178.46989 * 24 22 21 44 44 H 1.09005 * 113.60962 * 89.07883 * 25 22 21 45 45 H 1.08997 * 113.61757 * 219.97833 * 25 22 21 46 46 H 1.08004 * 120.06912 * 359.97438 * 26 11 10 47 47 H 1.08000 * 120.03000 * 0.04865 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7265 -0.0381 -2.1398 6 6 3.1885 -0.6870 -3.2702 7 6 2.8620 -2.0111 -3.4899 8 6 2.0594 -2.6864 -2.5816 9 8 1.7317 -3.9873 -2.7986 10 6 2.2435 -4.5959 -3.9859 11 6 1.7801 -6.0281 -4.0562 12 6 2.5465 -7.0302 -3.4885 13 6 2.1284 -8.3479 -3.5492 14 6 0.9406 -8.6698 -4.1722 15 6 0.1649 -7.6640 -4.7512 16 6 -1.1071 -8.0023 -5.4247 17 8 -1.7830 -7.1239 -5.9237 18 7 -1.5171 -9.2848 -5.4855 19 6 -2.7771 -9.6201 -6.1534 20 1 -3.0765 -8.8754 -6.8909 21 6 -2.8303 -11.0642 -6.6794 22 6 -3.3940 -11.4608 -5.3047 23 1 -4.1904 -12.2032 -5.3570 24 8 -2.3868 -11.7940 -4.3473 25 6 -3.9059 -10.0158 -5.1826 26 6 0.5920 -6.3371 -4.6862 27 6 1.5972 -2.0332 -1.4485 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4585 -1.2243 31 1 1.5614 2.4678 1.2085 32 1 2.9864 0.9959 -1.9676 33 1 3.8092 -0.1595 -3.9793 34 1 3.2275 -2.5189 -4.3703 35 1 3.3330 -4.5673 -3.9682 36 1 1.8800 -4.0528 -4.8583 37 1 3.4752 -6.7829 -2.9958 38 1 2.7311 -9.1254 -3.1036 39 1 0.6132 -9.6981 -4.2149 40 1 -0.9778 -9.9857 -5.0871 41 1 -1.8485 -11.4894 -6.8878 42 1 -3.5356 -11.2064 -7.4981 43 1 -2.7341 -12.0217 -3.4741 44 1 -4.9054 -9.8706 -5.5926 45 1 -3.7920 -9.5952 -4.1835 46 1 -0.0058 -5.5537 -5.1283 47 1 0.9757 -2.5579 -0.7380 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_4549630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:23 Heat of formation + Delta-G solvation = -64.105912 kcal Electronic energy + Delta-G solvation = -30006.327128 eV Core-core repulsion = 25701.085911 eV Total energy + Delta-G solvation = -4305.241218 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73153 -41.31963 -40.37634 -39.42851 -38.83159 -37.37976 -36.09498 -34.41991 -33.13496 -32.48545 -32.14262 -31.04303 -27.79963 -26.80358 -26.66175 -26.21108 -24.35585 -23.67158 -23.17574 -22.22260 -21.43417 -20.68169 -19.27172 -19.07783 -18.12722 -17.93089 -17.57736 -17.24028 -17.16987 -16.96893 -16.82909 -16.38399 -16.23265 -16.08799 -15.84489 -15.58071 -15.37319 -15.09957 -14.86800 -14.78470 -14.49441 -14.14828 -14.03019 -13.68277 -13.58267 -13.47677 -13.45947 -12.99694 -12.86072 -12.66009 -12.60224 -12.37624 -12.19625 -12.03748 -11.95893 -11.60212 -11.50346 -11.19105 -10.71557 -10.70433 -10.30019 -10.07580 -9.97062 -9.93895 -9.27305 -4.91984 -0.31510 0.11266 0.19664 0.39270 1.28670 1.61108 1.61923 1.93702 1.95655 2.22705 2.65942 2.82776 3.09188 3.37068 3.45363 3.49523 3.50484 3.65871 3.72317 3.74870 3.81354 3.83809 3.96438 4.06072 4.07306 4.12046 4.16568 4.22196 4.24572 4.41843 4.45005 4.54816 4.63868 4.65677 4.69241 4.71370 4.78971 4.83561 4.85333 4.94257 4.97529 4.99921 5.15142 5.24526 5.27204 5.34440 5.37277 5.43644 5.48640 5.70598 5.74697 6.35834 6.40116 6.43979 6.82401 7.05428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.092 4.092 3 Si 0.783 3.217 4 C -0.082 4.082 5 C -0.158 4.158 6 C -0.072 4.072 7 C -0.207 4.207 8 C 0.116 3.884 9 O -0.329 6.329 10 C 0.100 3.900 11 C -0.112 4.112 12 C -0.066 4.066 13 C -0.124 4.124 14 C -0.069 4.069 15 C -0.157 4.157 16 C 0.555 3.445 17 O -0.584 6.584 18 N -0.688 5.688 19 C 0.105 3.895 20 H 0.084 0.916 21 C -0.134 4.134 22 C 0.085 3.915 23 H 0.091 0.909 24 O -0.567 6.567 25 C -0.183 4.183 26 C -0.054 4.054 27 C -0.148 4.148 28 H 0.386 0.614 29 H 0.123 0.877 30 H -0.281 1.281 31 H -0.303 1.303 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.416 0.584 41 H 0.081 0.919 42 H 0.128 0.872 43 H 0.400 0.600 44 H 0.110 0.890 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -4.729 -0.615 7.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.199 4.199 3 Si 0.687 3.313 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.090 4.090 7 C -0.226 4.226 8 C 0.071 3.929 9 O -0.243 6.243 10 C 0.026 3.974 11 C -0.113 4.113 12 C -0.084 4.084 13 C -0.142 4.142 14 C -0.088 4.088 15 C -0.160 4.160 16 C 0.344 3.656 17 O -0.466 6.466 18 N -0.340 5.340 19 C 0.000 4.000 20 H 0.102 0.898 21 C -0.171 4.171 22 C 0.026 3.974 23 H 0.109 0.891 24 O -0.376 6.376 25 C -0.222 4.222 26 C -0.073 4.073 27 C -0.167 4.167 28 H 0.235 0.765 29 H 0.141 0.859 30 H -0.207 1.207 31 H -0.232 1.232 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.255 0.745 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.250 0.750 44 H 0.128 0.872 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.055 -3.670 -0.820 6.300 hybrid contribution -1.675 -0.447 -0.031 1.734 sum 3.380 -4.117 -0.851 5.394 Atomic orbital electron populations 1.86571 1.18672 1.80521 1.50101 1.25431 0.83416 1.12628 0.98454 0.93911 0.90074 0.70952 0.76361 1.20150 0.97770 0.93326 0.96986 1.21183 1.00256 1.00898 0.95223 1.21293 0.97484 0.93408 0.96840 1.21590 1.02784 0.96991 1.01212 1.19190 0.95269 0.83517 0.94972 1.86130 1.71607 1.22884 1.43713 1.21742 0.99945 0.89354 0.86394 1.19536 0.95722 0.94737 1.01268 1.21671 0.99740 0.92448 0.94562 1.21519 0.96288 0.97173 0.99198 1.21656 0.93938 0.99103 0.94099 1.19879 0.96147 0.95194 1.04801 1.18631 0.85393 0.82832 0.78788 1.90751 1.57905 1.48766 1.49151 1.45514 1.23487 1.07673 1.57347 1.22024 0.84469 0.97897 0.95622 0.89796 1.23477 1.03811 0.92852 0.96990 1.22768 0.90594 0.94366 0.89710 0.89129 1.86302 1.35498 1.90413 1.25405 1.24208 0.99421 0.98291 1.00301 1.21164 0.94726 0.95583 0.95870 1.20301 1.04004 0.94849 0.97540 0.76508 0.85904 1.20711 1.23174 0.83418 0.82441 0.83367 0.88280 0.90421 0.82796 0.81744 0.83143 0.74500 0.90073 0.85381 0.74957 0.87159 0.91730 0.86339 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.15 12.77 -148.98 -1.90 -5.05 16 2 C -0.09 -0.17 2.82 71.24 0.20 0.04 16 3 Si 0.78 -0.98 29.79 68.60 2.04 1.06 16 4 C -0.08 -0.23 5.39 -19.88 -0.11 -0.34 16 5 C -0.16 0.08 8.67 22.28 0.19 0.27 16 6 C -0.07 0.11 10.04 22.26 0.22 0.33 16 7 C -0.21 -0.17 9.04 22.37 0.20 0.03 16 8 C 0.12 0.66 6.69 22.51 0.15 0.81 16 9 O -0.33 -2.26 10.12 -92.44 -0.94 -3.20 16 10 C 0.10 0.09 4.86 71.23 0.35 0.44 16 11 C -0.11 -0.32 5.50 -19.90 -0.11 -0.42 16 12 C -0.07 0.09 9.69 22.33 0.22 0.31 16 13 C -0.12 0.38 10.03 22.23 0.22 0.60 16 14 C -0.07 0.03 9.54 22.53 0.21 0.25 16 15 C -0.16 -0.97 5.87 -20.09 -0.12 -1.09 16 16 C 0.55 5.55 7.77 86.79 0.67 6.22 16 17 O -0.58 -10.71 15.95 -3.87 -0.06 -10.77 16 18 N -0.69 -2.59 5.11 -442.48 -2.26 -4.85 16 19 C 0.11 0.27 4.33 45.61 0.20 0.46 16 20 H 0.08 0.56 7.46 -2.39 -0.02 0.54 16 21 C -0.13 0.42 7.66 31.12 0.24 0.66 16 22 C 0.08 -0.36 5.27 31.12 0.16 -0.19 16 23 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 24 O -0.57 2.31 12.32 -148.98 -1.84 0.47 16 25 C -0.18 0.16 7.73 31.22 0.24 0.40 16 26 C -0.05 -0.39 9.24 22.53 0.21 -0.19 16 27 C -0.15 -0.99 9.55 22.36 0.21 -0.78 16 28 H 0.39 0.05 8.70 -74.06 -0.64 -0.59 16 29 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 30 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 31 H -0.30 -1.96 7.11 99.48 0.71 -1.25 16 32 H 0.15 -0.75 4.87 -2.91 -0.01 -0.76 16 33 H 0.16 -1.13 8.06 -2.91 -0.02 -1.15 16 34 H 0.15 -0.53 6.30 -2.91 -0.02 -0.55 16 35 H 0.10 -0.42 7.59 -2.39 -0.02 -0.43 16 36 H 0.08 -0.02 7.62 -2.39 -0.02 -0.03 16 37 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 38 H 0.17 -1.49 8.06 -2.91 -0.02 -1.51 16 39 H 0.15 -0.82 6.41 -2.91 -0.02 -0.83 16 40 H 0.42 -0.13 5.63 -92.71 -0.52 -0.66 16 41 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.13 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H 0.40 -4.30 9.12 -74.06 -0.68 -4.98 16 44 H 0.11 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.12 1.21 7.65 -2.91 -0.02 1.18 16 47 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 Total: 0.00 -25.28 392.22 -2.14 -27.42 By element: Atomic # 1 Polarization: -12.12 SS G_CDS: -0.77 Total: -12.89 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 3.57 Total: 7.80 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -2.26 Total: -4.85 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -4.73 Total: -18.55 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: 2.04 Total: 1.06 kcal Total: -25.28 -2.14 -27.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.686 kcal (2) G-P(sol) polarization free energy of solvation -25.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds