Wall clock time and date at job start Sun Mar 7 2021 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38264 * 119.94555 * 119.72100 * 4 2 1 6 6 C 1.38138 * 120.05431 * 179.72623 * 5 4 2 7 7 C 1.38740 * 119.94513 * 0.57743 * 6 5 4 8 8 O 1.35899 * 120.05536 * 179.68548 * 7 6 5 9 9 C 1.42900 * 117.00511 * 0.02562 * 8 7 6 10 10 C 1.50692 * 109.47397 * 180.02562 * 9 8 7 11 11 C 1.36417 * 125.80355 * 90.00042 * 10 9 8 12 12 C 1.47375 * 127.18843 * 0.02562 * 11 10 9 13 13 O 1.21610 * 120.00554 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99561 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99929 * 180.02562 * 14 12 11 16 16 H 1.08994 * 112.84935 * 23.79844 * 15 14 12 17 17 C 1.53781 * 113.61494 * 154.99868 * 15 14 12 18 18 C 1.53790 * 87.08070 * 139.97875 * 17 15 14 19 19 H 1.08994 * 113.61327 * 89.20060 * 18 17 15 20 20 O 1.42904 * 113.61160 * 220.01978 * 18 17 15 21 21 C 1.53780 * 113.61171 * 252.49531 * 15 14 12 22 22 C 1.47019 * 105.61548 * 179.97438 * 11 10 9 23 23 C 1.34183 * 105.95472 * 0.02562 * 22 11 10 24 24 O 1.33659 * 125.79939 * 269.69080 * 10 9 8 25 25 C 1.38726 * 119.88742 * 359.69711 * 7 6 5 26 26 C 1.38153 * 119.94564 * 0.02562 * 25 7 6 27 27 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 28 28 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 29 29 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 30 30 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 31 31 H 1.08002 * 119.97450 * 359.97438 * 5 4 2 32 32 H 1.08003 * 120.02825 * 180.25290 * 6 5 4 33 33 H 1.09007 * 109.47130 * 300.00980 * 9 8 7 34 34 H 1.09003 * 109.46727 * 59.99954 * 9 8 7 35 35 H 0.97004 * 120.00028 * 359.97438 * 14 12 11 36 36 H 1.09002 * 113.61421 * 254.52635 * 17 15 14 37 37 H 1.08998 * 113.61181 * 25.43230 * 17 15 14 38 38 H 0.96700 * 113.98988 * 179.97438 * 20 18 17 39 39 H 1.09001 * 113.61664 * 334.56612 * 21 15 14 40 40 H 1.09000 * 113.61614 * 105.46994 * 21 15 14 41 41 H 1.08000 * 127.02586 * 180.02562 * 22 11 10 42 42 H 1.08001 * 125.43476 * 179.97438 * 23 22 11 43 43 H 1.07999 * 120.03394 * 179.97438 * 25 7 6 44 44 H 1.07995 * 119.97802 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0356 -2.1427 6 6 3.1878 -0.6862 -3.2685 7 6 2.8530 -2.0143 -3.4895 8 8 3.3053 -2.6547 -4.5996 9 6 4.1220 -1.8996 -5.4967 10 6 4.5256 -2.7679 -6.6603 11 6 3.8360 -2.9072 -7.8291 12 6 2.5701 -2.2500 -8.2002 13 8 2.0295 -1.4880 -7.4218 14 7 2.0116 -2.4936 -9.4024 15 6 0.7536 -1.8400 -9.7717 16 1 0.5818 -0.9130 -9.2247 17 6 0.5517 -1.7057 -11.2902 18 6 -0.9241 -2.0631 -11.0463 19 1 -1.5562 -1.1973 -10.8491 20 8 -1.4725 -2.9369 -12.0352 21 6 -0.4562 -2.7893 -9.7740 22 6 4.6201 -3.8488 -8.6415 23 6 5.6860 -4.1797 -7.8966 24 8 5.6231 -3.5281 -6.7250 25 6 2.0554 -2.6875 -2.5756 26 6 1.5962 -2.0340 -1.4483 27 1 -0.3933 0.4417 -0.7649 28 1 1.7923 -0.5138 0.8900 29 1 1.5878 2.4586 -1.2242 30 1 1.5615 2.4679 1.2085 31 1 2.9775 0.9998 -1.9730 32 1 3.8083 -0.1599 -3.9788 33 1 3.5608 -1.0398 -5.8627 34 1 5.0140 -1.5551 -4.9734 35 1 2.4430 -3.1012 -10.0235 36 1 0.6996 -0.6920 -11.6624 37 1 1.0919 -2.4538 -11.8703 38 1 -2.4003 -3.1655 -11.8869 39 1 -0.1915 -3.8336 -9.9397 40 1 -1.1220 -2.6503 -8.9222 41 1 4.3860 -4.2021 -9.6349 42 1 6.4715 -4.8585 -8.1943 43 1 1.7930 -3.7212 -2.7455 44 1 0.9749 -2.5574 -0.7367 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_4549634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:32 Heat of formation + Delta-G solvation = -75.476820 kcal Electronic energy + Delta-G solvation = -29490.010302 eV Core-core repulsion = 25149.357572 eV Total energy + Delta-G solvation = -4340.652730 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.74021 -41.32595 -41.15469 -39.60460 -39.25129 -37.32573 -36.41264 -34.55214 -33.55059 -32.82185 -31.99796 -31.41803 -28.07228 -26.82544 -26.31866 -25.82174 -24.01317 -23.74870 -22.43667 -22.08697 -21.48262 -20.55039 -19.52810 -19.14326 -18.77268 -18.38025 -17.48982 -17.24863 -17.09391 -16.96210 -16.75373 -16.45720 -16.17646 -16.08690 -15.90820 -15.73445 -15.49557 -14.88330 -14.69966 -14.60172 -14.40654 -14.22815 -13.95618 -13.67436 -13.58920 -13.54262 -13.52159 -13.13021 -12.74480 -12.35776 -12.32387 -12.14053 -12.11883 -11.76457 -11.65916 -11.21455 -10.99679 -10.84348 -10.61107 -10.19228 -10.07017 -9.84940 -9.26437 -4.92840 -0.07150 0.24747 0.27659 1.00569 1.32045 1.49162 1.60311 1.95341 1.99495 2.07887 2.44022 2.62087 3.29105 3.32395 3.38543 3.42035 3.54465 3.62624 3.67727 3.71005 3.76801 3.77914 3.89282 3.91266 3.92660 4.09263 4.27521 4.40282 4.40737 4.44095 4.54495 4.61582 4.66390 4.67411 4.70202 4.78452 4.89191 4.91241 4.93786 5.06095 5.12588 5.23358 5.24298 5.42509 5.45167 5.66940 5.86284 6.23881 6.38567 6.48016 6.82725 7.04065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.078 4.078 3 Si 0.766 3.234 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.125 3.875 8 O -0.323 6.323 9 C 0.135 3.865 10 C 0.043 3.957 11 C -0.226 4.226 12 C 0.585 3.415 13 O -0.571 6.571 14 N -0.697 5.697 15 C 0.121 3.879 16 H 0.108 0.892 17 C -0.130 4.130 18 C 0.082 3.918 19 H 0.101 0.899 20 O -0.576 6.576 21 C -0.180 4.180 22 C -0.199 4.199 23 C -0.010 4.010 24 O -0.176 6.176 25 C -0.163 4.163 26 C -0.057 4.057 27 H 0.385 0.615 28 H 0.126 0.874 29 H -0.285 1.285 30 H -0.302 1.302 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.415 0.585 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.190 0.810 42 H 0.253 0.747 43 H 0.132 0.868 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -0.923 -4.532 6.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.186 4.186 3 Si 0.672 3.328 4 C -0.158 4.158 5 C -0.093 4.093 6 C -0.224 4.224 7 C 0.080 3.920 8 O -0.238 6.238 9 C 0.060 3.940 10 C -0.011 4.011 11 C -0.231 4.231 12 C 0.373 3.627 13 O -0.452 6.452 14 N -0.348 5.348 15 C 0.016 3.984 16 H 0.126 0.874 17 C -0.168 4.168 18 C 0.022 3.978 19 H 0.118 0.882 20 O -0.384 6.384 21 C -0.219 4.219 22 C -0.217 4.217 23 C -0.076 4.076 24 O -0.071 6.071 25 C -0.182 4.182 26 C -0.075 4.075 27 H 0.234 0.766 28 H 0.144 0.856 29 H -0.211 1.211 30 H -0.231 1.231 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.252 0.748 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.247 0.753 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.207 0.793 42 H 0.269 0.731 43 H 0.150 0.850 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.302 -0.051 -3.553 5.580 hybrid contribution -1.629 -0.534 -0.756 1.873 sum 2.673 -0.585 -4.309 5.104 Atomic orbital electron populations 1.86556 1.18700 1.80353 1.50131 1.25179 0.83276 1.11702 0.98487 0.94146 0.90340 0.72059 0.76290 1.20286 1.01918 0.95313 0.98302 1.21019 0.95621 1.00021 0.92650 1.21418 1.06081 0.93709 1.01168 1.19182 0.94647 0.91909 0.86300 1.86047 1.65306 1.40684 1.31723 1.21156 0.95524 0.91176 0.86108 1.22058 0.86965 0.95963 0.96064 1.21378 0.98549 1.05919 0.97252 1.17482 0.83169 0.80175 0.81829 1.90765 1.64453 1.38493 1.51522 1.45615 1.24619 1.47681 1.16849 1.22250 0.82813 0.97014 0.96322 0.87423 1.23436 0.95109 1.03901 0.94352 1.23126 0.94607 0.92789 0.87247 0.88150 1.86468 1.32793 1.68125 1.51009 1.24167 0.97946 1.00445 0.99355 1.23248 0.95486 1.00240 1.02767 1.24917 1.02030 0.98348 0.82279 1.83798 1.38529 1.46864 1.37936 1.20628 1.01211 1.01427 0.94916 1.20943 0.96960 0.93894 0.95751 0.76585 0.85607 1.21129 1.23062 0.83295 0.83410 0.87539 0.87823 0.74763 0.89001 0.88244 0.75318 0.89160 0.91149 0.79272 0.73113 0.84969 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.33 12.77 -148.98 -1.90 -4.23 16 2 C -0.08 -0.07 2.82 71.24 0.20 0.13 16 3 Si 0.77 -0.60 29.78 68.60 2.04 1.45 16 4 C -0.16 -0.41 5.39 -19.85 -0.11 -0.52 16 5 C -0.08 -0.12 8.66 22.25 0.19 0.08 16 6 C -0.21 -0.73 9.04 22.37 0.20 -0.53 16 7 C 0.12 0.93 6.69 22.51 0.15 1.08 16 8 O -0.32 -3.03 10.12 -92.42 -0.94 -3.97 16 9 C 0.13 0.65 4.74 71.23 0.34 0.99 16 10 C 0.04 0.22 7.00 25.26 0.18 0.40 16 11 C -0.23 -0.94 6.31 -18.99 -0.12 -1.06 16 12 C 0.58 3.92 7.81 86.65 0.68 4.60 16 13 O -0.57 -7.65 14.44 -4.06 -0.06 -7.70 16 14 N -0.70 -0.33 5.35 -443.35 -2.37 -2.71 16 15 C 0.12 0.02 4.24 45.52 0.19 0.21 16 16 H 0.11 0.33 7.46 -2.39 -0.02 0.31 16 17 C -0.13 0.37 7.66 31.12 0.24 0.61 16 18 C 0.08 -0.19 5.21 31.12 0.16 -0.03 16 19 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 20 O -0.58 0.26 13.67 -148.98 -2.04 -1.78 16 21 C -0.18 0.09 7.71 31.12 0.24 0.33 16 22 C -0.20 0.62 10.60 23.65 0.25 0.87 16 23 C -0.01 0.04 12.03 66.89 0.80 0.85 16 24 O -0.18 -0.45 10.52 4.44 0.05 -0.40 16 25 C -0.16 -1.09 9.99 22.37 0.22 -0.86 16 26 C -0.06 -0.25 9.60 22.26 0.21 -0.04 16 27 H 0.39 -0.32 8.70 -74.06 -0.64 -0.96 16 28 H 0.13 -0.12 7.96 -2.39 -0.02 -0.14 16 29 H -0.28 -0.93 7.11 99.48 0.71 -0.22 16 30 H -0.30 -2.05 7.11 99.48 0.71 -1.34 16 31 H 0.15 -0.48 4.87 -2.91 -0.01 -0.49 16 32 H 0.15 -0.08 6.30 -2.91 -0.02 -0.10 16 33 H 0.11 0.64 6.00 -2.38 -0.01 0.62 16 34 H 0.10 -0.04 7.66 -2.39 -0.02 -0.05 16 35 H 0.42 -2.03 7.90 -92.71 -0.73 -2.76 16 36 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.10 -0.33 8.12 -2.39 -0.02 -0.35 16 38 H 0.40 -3.17 9.12 -74.06 -0.68 -3.84 16 39 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.19 -1.88 7.74 -2.91 -0.02 -1.91 16 42 H 0.25 -3.36 8.06 -2.91 -0.02 -3.39 16 43 H 0.13 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 Total: 0.00 -24.61 374.96 -2.11 -26.72 By element: Atomic # 1 Polarization: -13.56 SS G_CDS: -0.93 Total: -14.49 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 4.04 Total: 7.12 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -2.37 Total: -2.71 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -4.89 Total: -18.08 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.04 Total: 1.45 kcal Total: -24.61 -2.11 -26.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.761 kcal (2) G-P(sol) polarization free energy of solvation -24.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds