Wall clock time and date at job start Sun Mar 7 2021 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36000 * 116.99698 * 2 1 4 4 C 1.39160 * 120.07095 * 180.02562 * 3 2 1 5 5 O 1.35994 * 120.07464 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99942 * 179.72737 * 5 4 3 7 7 C 1.50703 * 109.46859 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99948 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99369 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99390 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.91246 * 23.74616 * 10 9 7 12 12 C 1.53786 * 113.61518 * 154.99856 * 10 9 7 13 13 C 1.53781 * 87.17350 * 89.15486 * 12 10 9 14 14 H 1.09001 * 113.61695 * 139.93969 * 13 12 10 15 15 O 1.42902 * 113.61735 * 270.76044 * 13 12 10 16 16 C 1.53782 * 87.08260 * 25.39213 * 13 12 10 17 17 C 1.38566 * 119.84889 * 179.72843 * 4 3 2 18 18 C 1.38237 * 120.00178 * 0.27082 * 17 4 3 19 19 N 1.48010 * 119.92701 * 180.02562 * 18 17 4 20 20 O 1.21800 * 119.99789 * 359.97438 * 19 18 17 21 21 O 1.21795 * 119.99788 * 180.02562 * 19 18 17 22 22 C 1.38247 * 120.14676 * 359.97438 * 18 17 4 23 23 C 1.50704 * 119.92577 * 179.97438 * 22 18 17 24 24 O 1.42898 * 109.47232 * 75.00370 * 23 22 18 25 25 Si 1.86304 * 109.47230 * 194.99927 * 23 22 18 26 26 C 1.38244 * 120.15161 * 0.02562 * 22 18 17 27 27 H 1.08998 * 109.47908 * 60.00256 * 1 2 3 28 28 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47595 * 299.99907 * 1 2 3 30 30 H 1.09002 * 109.47129 * 60.00013 * 6 5 4 31 31 H 1.09002 * 109.46992 * 300.00118 * 6 5 4 32 32 H 0.97001 * 120.00492 * 359.97438 * 9 7 6 33 33 H 1.09002 * 113.61357 * 334.56403 * 12 10 9 34 34 H 1.09002 * 113.61608 * 203.74565 * 12 10 9 35 35 H 0.96694 * 114.00074 * 180.02562 * 15 13 12 36 36 H 1.08997 * 113.61668 * 89.11298 * 16 13 12 37 37 H 1.08994 * 113.61387 * 220.02033 * 16 13 12 38 38 H 1.08002 * 119.99529 * 180.25120 * 17 4 3 39 39 H 1.08993 * 109.47252 * 315.00193 * 23 22 18 40 40 H 0.96703 * 114.00186 * 59.99232 * 24 23 22 41 41 H 1.48495 * 110.00331 * 179.97438 * 25 23 22 42 42 H 1.48496 * 109.99916 * 301.32203 * 25 23 22 43 43 H 1.07999 * 120.00480 * 180.02562 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4359 1.2864 -0.0005 5 8 4.1795 0.1478 -0.0005 6 6 5.6003 0.3009 -0.0072 7 6 6.2519 -1.0580 -0.0055 8 8 5.5670 -2.0589 0.0003 9 7 7.5957 -1.1609 -0.0104 10 6 8.2291 -2.4818 -0.0094 11 1 7.5824 -3.2629 -0.4091 12 6 9.6447 -2.4867 -0.6104 13 6 10.1639 -2.1799 0.8042 14 1 11.0769 -2.7175 1.0604 15 8 10.2426 -0.7829 1.0947 16 6 8.8852 -2.8501 1.3339 17 6 4.0601 2.5235 -0.0062 18 6 3.3027 3.6799 -0.0057 19 7 3.9712 5.0005 -0.0124 20 8 5.1873 5.0673 -0.0178 21 8 3.3051 6.0201 -0.0114 22 6 1.9222 3.6057 0.0000 23 6 1.1014 4.8696 0.0011 24 8 1.1291 5.4568 -1.3014 25 14 -0.6579 4.4672 0.4634 26 6 1.2930 2.3748 0.0057 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 5.9103 0.8532 0.8799 31 1 5.9026 0.8482 -0.9000 32 1 8.1435 -0.3603 -0.0154 33 1 9.8189 -1.6812 -1.3238 34 1 9.9554 -3.4610 -0.9878 35 1 10.5689 -0.5836 1.9828 36 1 8.9870 -3.9242 1.4885 37 1 8.4464 -2.3378 2.1901 38 1 5.1384 2.5842 -0.0108 39 1 1.5158 5.5714 0.7248 40 1 0.7745 4.8868 -1.9974 41 1 -1.4777 5.7053 0.4688 42 1 -1.2240 3.4868 -0.4975 43 1 0.2144 2.3196 0.0097 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_4549636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:36 Heat of formation + Delta-G solvation = -112.291823 kcal Electronic energy + Delta-G solvation = -32121.637900 eV Core-core repulsion = 27333.050738 eV Total energy + Delta-G solvation = -4788.587162 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.40022 -42.14855 -41.41391 -40.21599 -39.38342 -39.13758 -37.74203 -37.24432 -36.05575 -34.08433 -32.70918 -32.53731 -29.92010 -28.80775 -27.93090 -26.77021 -25.99118 -25.25345 -23.87024 -23.21987 -22.00063 -20.84671 -20.59924 -19.86405 -19.56247 -18.94992 -18.68113 -18.51394 -18.10561 -17.77764 -17.63228 -17.42688 -16.90516 -16.86861 -16.49623 -16.26849 -16.19365 -15.69912 -15.54840 -15.27160 -14.97690 -14.75672 -14.48180 -14.03966 -13.79641 -13.64608 -13.53740 -13.46615 -13.07923 -12.70995 -12.68808 -12.51529 -12.49294 -12.39662 -12.33181 -12.25869 -12.11714 -11.71407 -11.47491 -11.13816 -10.69485 -10.65503 -10.50325 -10.17652 -9.52036 -5.00360 -1.36548 -0.45955 0.16008 0.30202 1.12906 1.20243 1.32653 1.46389 1.85395 1.86782 1.93076 2.30389 2.96045 3.09517 3.16327 3.23950 3.39596 3.45541 3.47720 3.48352 3.73516 3.82585 3.84866 3.91270 3.92500 4.03720 4.08055 4.14619 4.23775 4.31096 4.36488 4.58548 4.67973 4.70359 4.72129 4.75269 4.80927 4.85167 4.97007 5.01940 5.26112 5.45725 5.56566 6.02321 6.36821 6.42626 6.48226 6.85384 7.03787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.307 6.307 3 C 0.170 3.830 4 C 0.100 3.900 5 O -0.290 6.290 6 C 0.029 3.971 7 C 0.516 3.484 8 O -0.567 6.567 9 N -0.688 5.688 10 C 0.110 3.890 11 H 0.085 0.915 12 C -0.136 4.136 13 C 0.083 3.917 14 H 0.088 0.912 15 O -0.567 6.567 16 C -0.181 4.181 17 C -0.110 4.110 18 C -0.043 4.043 19 N 0.036 4.964 20 O -0.192 6.192 21 O -0.158 6.158 22 C -0.033 4.033 23 C -0.103 4.103 24 O -0.529 6.529 25 Si 0.776 3.224 26 C -0.171 4.171 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.400 0.600 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.181 0.819 39 H 0.129 0.871 40 H 0.383 0.617 41 H -0.294 1.294 42 H -0.249 1.249 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -4.758 2.853 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.219 6.219 3 C 0.121 3.879 4 C 0.053 3.947 5 O -0.203 6.203 6 C -0.048 4.048 7 C 0.302 3.698 8 O -0.445 6.445 9 N -0.342 5.342 10 C 0.004 3.996 11 H 0.103 0.897 12 C -0.173 4.173 13 C 0.024 3.976 14 H 0.106 0.894 15 O -0.376 6.376 16 C -0.220 4.220 17 C -0.129 4.129 18 C -0.127 4.127 19 N 0.549 4.451 20 O -0.401 6.401 21 O -0.374 6.374 22 C -0.035 4.035 23 C -0.210 4.210 24 O -0.336 6.336 25 Si 0.677 3.323 26 C -0.190 4.190 27 H 0.093 0.907 28 H 0.141 0.859 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.258 0.742 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.251 0.749 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.199 0.801 39 H 0.146 0.854 40 H 0.232 0.768 41 H -0.222 1.222 42 H -0.174 1.174 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.242 -5.963 2.328 6.521 hybrid contribution 1.066 1.004 -0.661 1.607 sum -0.176 -4.959 1.667 5.235 Atomic orbital electron populations 1.23755 0.74899 1.06990 1.03792 1.86329 1.24622 1.24634 1.86283 1.18664 0.89101 0.86344 0.93777 1.17971 0.88778 0.85116 1.02808 1.86297 1.18312 1.26921 1.88735 1.22857 0.78854 0.95976 1.07135 1.20332 0.82994 0.90488 0.75950 1.90764 1.63875 1.39717 1.50187 1.45427 1.04961 1.10055 1.73787 1.21968 0.94362 0.84979 0.98242 0.89684 1.23489 0.92874 1.04443 0.96540 1.22764 0.96709 0.82278 0.95861 0.89409 1.86310 1.89236 1.22509 1.39528 1.24175 0.97886 1.02757 0.97204 1.20894 1.02954 0.88227 1.00868 1.20529 0.92698 0.81948 1.17521 1.43685 1.00810 1.03363 0.97197 1.94515 0.96513 1.94107 1.54929 1.94570 1.64419 1.25357 1.53041 1.20108 0.90930 0.97435 0.95062 1.25800 1.11773 0.93751 0.89641 1.86773 1.85307 1.45011 1.16493 0.94218 0.70064 0.79755 0.88285 1.21221 1.02222 0.88339 1.07194 0.90676 0.85920 0.89180 0.85478 0.85727 0.74159 0.90089 0.85610 0.74924 0.87286 0.91319 0.80145 0.85382 0.76789 1.22152 1.17441 0.79503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.36 10.28 -79.69 -0.82 -1.17 16 3 C 0.17 0.04 6.70 22.57 0.15 0.19 16 4 C 0.10 0.19 6.70 22.57 0.15 0.34 16 5 O -0.29 -1.44 9.45 -67.06 -0.63 -2.08 16 6 C 0.03 -0.05 5.22 71.24 0.37 0.32 16 7 C 0.52 2.21 7.91 87.66 0.69 2.90 16 8 O -0.57 -8.32 16.10 16.02 0.26 -8.06 16 9 N -0.69 0.58 5.16 -439.74 -2.27 -1.69 16 10 C 0.11 -0.06 4.33 45.58 0.20 0.14 16 11 H 0.08 0.32 7.47 -2.39 -0.02 0.30 16 12 C -0.14 0.67 7.65 31.12 0.24 0.91 16 13 C 0.08 -0.50 5.27 31.12 0.16 -0.33 16 14 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 15 O -0.57 3.22 12.34 -148.98 -1.84 1.38 16 16 C -0.18 0.64 7.72 31.18 0.24 0.88 16 17 C -0.11 -0.06 8.54 22.35 0.19 0.13 16 18 C -0.04 -0.16 6.84 36.38 0.25 0.09 16 19 N 0.04 0.35 4.45 -46.46 -0.21 0.14 16 20 O -0.19 -2.16 18.44 18.89 0.35 -1.81 16 21 O -0.16 -1.97 14.62 25.11 0.37 -1.61 16 22 C -0.03 0.00 5.26 -19.86 -0.10 -0.10 16 23 C -0.10 -0.02 1.74 71.24 0.12 0.11 16 24 O -0.53 -1.88 11.79 -129.61 -1.53 -3.41 16 25 Si 0.78 -4.22 30.24 68.60 2.07 -2.14 16 26 C -0.17 0.66 7.64 22.35 0.17 0.83 16 27 H 0.07 -0.80 7.67 -2.39 -0.02 -0.82 16 28 H 0.12 -1.22 8.14 -2.38 -0.02 -1.24 16 29 H 0.09 -1.14 7.65 -2.39 -0.02 -1.16 16 30 H 0.13 -0.96 7.66 -2.39 -0.02 -0.98 16 31 H 0.13 -0.90 7.66 -2.39 -0.02 -0.91 16 32 H 0.42 -2.07 7.61 -92.71 -0.71 -2.77 16 33 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.40 -4.92 9.12 -74.06 -0.68 -5.59 16 36 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.18 -0.63 5.85 -2.91 -0.02 -0.64 16 39 H 0.13 0.34 6.07 -2.39 -0.01 0.33 16 40 H 0.38 -1.55 8.70 -74.05 -0.64 -2.19 16 41 H -0.29 -0.87 7.11 99.48 0.71 -0.17 16 42 H -0.25 1.62 6.68 99.48 0.66 2.29 16 43 H 0.19 -1.78 3.09 -2.91 -0.01 -1.79 16 Total: 0.00 -29.93 365.42 -1.20 -31.13 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: -0.90 Total: -18.21 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.95 Total: 7.52 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -2.47 Total: -1.55 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -3.85 Total: -16.76 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.07 Total: -2.14 kcal Total: -29.93 -1.20 -31.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.161 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds