Wall clock time and date at job start Sun Mar 7 2021 22:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47297 * 2 1 4 4 C 1.50706 * 109.47087 * 240.00054 * 2 1 3 5 5 C 1.38244 * 119.94229 * 120.02398 * 4 2 1 6 6 C 1.38169 * 120.05366 * 179.71828 * 5 4 2 7 7 C 1.38715 * 119.94046 * 0.53433 * 6 5 4 8 8 O 1.35899 * 120.05294 * 179.74235 * 7 6 5 9 9 C 1.42903 * 117.00182 * 359.72312 * 8 7 6 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00044 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99769 * 179.97438 * 12 10 9 14 14 H 1.08997 * 112.85099 * 336.19494 * 13 12 10 15 15 C 1.53779 * 113.69123 * 107.46801 * 13 12 10 16 16 C 1.53779 * 87.08402 * 89.12592 * 15 13 12 17 17 H 1.09004 * 113.61501 * 139.97990 * 16 15 13 18 18 O 1.42900 * 113.61490 * 270.88769 * 16 15 13 19 19 C 1.53784 * 87.08045 * 25.43458 * 16 15 13 20 20 C 1.38751 * 119.89099 * 359.46460 * 7 6 5 21 21 N 1.47996 * 120.02928 * 180.27837 * 20 7 6 22 22 O 1.21795 * 120.00432 * 180.02562 * 21 20 7 23 23 O 1.21802 * 120.00134 * 359.97438 * 21 20 7 24 24 C 1.38127 * 119.94329 * 0.25599 * 20 7 6 25 25 H 0.96702 * 113.99995 * 60.00462 * 1 2 3 26 26 H 1.09002 * 109.47324 * 120.00015 * 2 1 3 27 27 H 1.48492 * 109.99931 * 59.99710 * 3 2 1 28 28 H 1.48496 * 110.00106 * 181.31628 * 3 2 1 29 29 H 1.07999 * 119.97833 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.02825 * 180.25113 * 6 5 4 31 31 H 1.09007 * 109.47008 * 60.00166 * 9 8 7 32 32 H 1.08999 * 109.46810 * 300.00232 * 9 8 7 33 33 H 0.96998 * 119.99913 * 0.02562 * 12 10 9 34 34 H 1.09006 * 113.61280 * 203.67416 * 15 13 12 35 35 H 1.08999 * 113.61062 * 334.49170 * 15 13 12 36 36 H 0.96701 * 113.99636 * 277.49879 * 18 16 15 37 37 H 1.09004 * 113.61451 * 220.02152 * 19 16 15 38 38 H 1.08994 * 113.61477 * 89.11454 * 19 16 15 39 39 H 1.08000 * 119.97136 * 179.97438 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0376 -2.1395 6 6 3.1930 -0.6883 -3.2655 7 6 2.8539 -2.0147 -3.4890 8 8 3.3072 -2.6554 -4.5984 9 6 4.1241 -1.9004 -5.4954 10 6 4.5299 -2.7695 -6.6577 11 8 4.1568 -3.9222 -6.7122 12 7 5.3075 -2.2659 -7.6366 13 6 5.7025 -3.1109 -8.7662 14 1 5.6784 -4.1743 -8.5280 15 6 4.9882 -2.7579 -10.0814 16 6 6.1370 -1.7714 -10.3491 17 1 6.4638 -1.7534 -11.3889 18 8 5.9066 -0.4659 -9.8158 19 6 7.0069 -2.6613 -9.4455 20 6 2.0557 -2.6878 -2.5751 21 7 1.6971 -4.1047 -2.8075 22 8 0.9960 -4.6949 -2.0053 23 8 2.1022 -4.6804 -3.8015 24 6 1.5965 -2.0344 -1.4481 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7703 -0.0321 29 1 2.9865 0.9964 -1.9673 30 1 3.8175 -0.1635 -3.9732 31 1 5.0156 -1.5551 -4.9718 32 1 3.5626 -1.0412 -5.8623 33 1 5.6063 -1.3441 -7.5927 34 1 4.9475 -3.5839 -10.7915 35 1 4.0214 -2.2756 -9.9373 36 1 5.3600 0.0985 -10.3797 37 1 7.6704 -2.0996 -8.7880 38 1 7.5180 -3.4608 -9.9817 39 1 0.9749 -2.5577 -0.7367 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_4549638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:41 Heat of formation + Delta-G solvation = -80.300893 kcal Electronic energy + Delta-G solvation = -27445.510236 eV Core-core repulsion = 23132.530115 eV Total energy + Delta-G solvation = -4312.980120 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.00663 -41.80378 -41.25685 -40.05817 -39.13203 -37.52547 -37.10911 -36.19575 -34.08946 -33.46127 -32.36007 -30.02782 -27.58527 -26.94192 -26.76237 -25.52335 -24.02249 -22.81264 -21.95629 -20.76869 -20.44116 -19.44098 -19.20520 -18.87980 -18.32692 -18.29158 -18.02933 -17.63327 -17.29177 -16.94508 -16.50142 -16.36333 -16.27486 -15.71564 -15.61840 -15.47048 -14.99505 -14.87268 -14.17270 -14.09673 -13.93979 -13.79372 -13.58826 -13.28470 -12.82714 -12.57235 -12.45930 -12.40413 -12.18470 -12.11305 -11.83527 -11.72019 -11.63444 -10.97436 -10.92258 -10.87523 -10.76073 -10.15219 -9.88988 -5.30007 -1.11908 -0.36850 0.39425 0.54748 1.01452 1.09941 1.36721 1.43234 1.75799 1.94753 2.20866 2.83564 2.99681 3.05021 3.21588 3.26254 3.31260 3.41007 3.52571 3.58544 3.61226 3.64345 3.72349 3.73888 3.96033 4.15756 4.16848 4.31432 4.44357 4.51361 4.53442 4.66350 4.68535 4.71240 4.83136 4.85354 4.93888 5.40020 5.48431 5.72359 6.32883 6.33295 6.45319 6.95247 7.08838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.065 4.065 3 Si 0.692 3.308 4 C -0.158 4.158 5 C -0.025 4.025 6 C -0.209 4.209 7 C 0.200 3.800 8 O -0.254 6.254 9 C 0.032 3.968 10 C 0.514 3.486 11 O -0.498 6.498 12 N -0.703 5.703 13 C 0.127 3.873 14 H 0.107 0.893 15 C -0.185 4.185 16 C 0.077 3.923 17 H 0.073 0.927 18 O -0.555 6.555 19 C -0.141 4.141 20 C -0.076 4.076 21 N 0.029 4.971 22 O -0.177 6.177 23 O -0.118 6.118 24 C 0.009 3.991 25 H 0.381 0.619 26 H 0.121 0.879 27 H -0.248 1.248 28 H -0.254 1.254 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.408 0.592 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 10.411 -4.847 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.593 3.407 4 C -0.160 4.160 5 C -0.043 4.043 6 C -0.228 4.228 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.047 4.047 10 C 0.298 3.702 11 O -0.371 6.371 12 N -0.358 5.358 13 C 0.021 3.979 14 H 0.125 0.875 15 C -0.224 4.224 16 C 0.017 3.983 17 H 0.091 0.909 18 O -0.362 6.362 19 C -0.179 4.179 20 C -0.160 4.160 21 N 0.549 4.451 22 O -0.386 6.386 23 O -0.342 6.342 24 C -0.010 4.010 25 H 0.229 0.771 26 H 0.138 0.862 27 H -0.173 1.173 28 H -0.179 1.179 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.332 10.068 -3.314 11.451 hybrid contribution -0.092 -0.079 -0.435 0.451 sum 4.240 9.989 -3.749 11.481 Atomic orbital electron populations 1.86560 1.16591 1.81618 1.49328 1.25097 0.85684 1.10247 0.96566 0.94896 0.80721 0.77007 0.88054 1.20314 1.02291 0.93991 0.99365 1.21266 0.91873 0.99800 0.91325 1.21285 1.06989 0.92735 1.01837 1.18701 0.89868 0.90804 0.85609 1.86501 1.62781 1.37546 1.29437 1.22717 0.96315 0.94896 0.90731 1.19820 0.79331 0.88114 0.82927 1.90857 1.52287 1.17132 1.76807 1.45442 1.52304 1.16093 1.21974 1.21775 0.94793 0.96135 0.85176 0.87510 1.24146 0.99385 1.00688 0.98158 1.22813 0.95963 0.82649 0.96848 0.90915 1.86333 1.74613 1.24368 1.50863 1.23463 0.96489 0.99168 0.98768 1.20587 1.10608 0.84039 1.00777 1.43336 0.99181 1.02287 1.00340 1.94554 1.35200 1.66704 1.42111 1.94701 1.54724 1.67573 1.17202 1.20834 0.93512 0.93550 0.93070 0.77130 0.86171 1.17287 1.17910 0.83411 0.82569 0.88064 0.87950 0.75556 0.88036 0.90350 0.76602 0.89784 0.87029 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.82 12.77 -35.23 -0.45 0.37 16 2 C -0.07 0.16 2.82 36.01 0.10 0.26 16 3 Si 0.69 -2.55 29.78 -169.99 -5.06 -7.62 16 4 C -0.16 0.31 5.39 -104.60 -0.56 -0.26 16 5 C -0.02 0.09 8.66 -39.60 -0.34 -0.25 16 6 C -0.21 0.64 9.04 -39.43 -0.36 0.28 16 7 C 0.20 0.19 6.67 -39.22 -0.26 -0.07 16 8 O -0.25 -0.65 7.68 -49.78 -0.38 -1.04 16 9 C 0.03 -0.06 5.22 36.01 0.19 0.13 16 10 C 0.51 0.70 7.91 -10.98 -0.09 0.61 16 11 O -0.50 -3.35 16.10 -14.35 -0.23 -3.58 16 12 N -0.70 0.89 5.15 -53.02 -0.27 0.62 16 13 C 0.13 -0.11 4.32 -67.12 -0.29 -0.40 16 14 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 15 C -0.18 0.38 7.71 -25.92 -0.20 0.18 16 16 C 0.08 -0.23 5.28 -25.92 -0.14 -0.37 16 17 H 0.07 -0.28 8.14 -51.93 -0.42 -0.71 16 18 O -0.56 1.78 12.32 -35.23 -0.43 1.34 16 19 C -0.14 0.38 7.66 -25.91 -0.20 0.18 16 20 C -0.08 -0.23 6.87 -79.81 -0.55 -0.77 16 21 N 0.03 0.19 4.45 34.03 0.15 0.35 16 22 O -0.18 -1.32 18.45 -29.46 -0.54 -1.86 16 23 O -0.12 -1.05 17.24 -36.49 -0.63 -1.68 16 24 C 0.01 0.01 9.12 -39.60 -0.36 -0.36 16 25 H 0.38 -2.11 8.70 45.56 0.40 -1.71 16 26 H 0.12 -0.24 7.96 -51.93 -0.41 -0.65 16 27 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 28 H -0.25 0.47 7.11 56.52 0.40 0.87 16 29 H 0.15 -0.95 4.87 -52.49 -0.26 -1.20 16 30 H 0.16 -1.02 6.30 -52.49 -0.33 -1.35 16 31 H 0.10 -0.50 7.65 -51.93 -0.40 -0.90 16 32 H 0.10 -0.53 7.67 -51.93 -0.40 -0.92 16 33 H 0.41 -1.38 7.60 -40.82 -0.31 -1.69 16 34 H 0.10 -0.27 8.14 -51.93 -0.42 -0.70 16 35 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.39 -2.49 9.12 45.56 0.42 -2.08 16 37 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 38 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 39 H 0.16 0.12 7.61 -52.49 -0.40 -0.28 16 LS Contribution 340.48 15.07 5.13 5.13 Total: 0.00 -12.84 340.48 -9.17 -22.02 By element: Atomic # 1 Polarization: -9.82 SS G_CDS: -3.39 Total: -13.21 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -3.06 Total: -0.83 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -0.12 Total: 0.96 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -2.67 Total: -6.44 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: -5.06 Total: -7.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -12.84 -9.17 -22.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.286 kcal (2) G-P(sol) polarization free energy of solvation -12.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds