Wall clock time and date at job start Sun Mar 7 2021 22:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86303 * 109.47297 * 2 1 4 4 C 1.50706 * 109.47087 * 240.00054 * 2 1 3 5 5 C 1.38244 * 119.94229 * 120.02398 * 4 2 1 6 6 C 1.38169 * 120.05366 * 179.71828 * 5 4 2 7 7 C 1.38715 * 119.94046 * 0.53433 * 6 5 4 8 8 O 1.35899 * 120.05294 * 179.74235 * 7 6 5 9 9 C 1.42903 * 117.00182 * 359.72312 * 8 7 6 10 10 C 1.50700 * 109.47071 * 179.97438 * 9 8 7 11 11 O 1.21276 * 120.00044 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99706 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99769 * 179.97438 * 12 10 9 14 14 H 1.08997 * 112.85099 * 336.19494 * 13 12 10 15 15 C 1.53779 * 113.69123 * 107.46801 * 13 12 10 16 16 C 1.53779 * 87.08402 * 89.12592 * 15 13 12 17 17 H 1.09004 * 113.61501 * 139.97990 * 16 15 13 18 18 O 1.42900 * 113.61490 * 270.88769 * 16 15 13 19 19 C 1.53784 * 87.08045 * 25.43458 * 16 15 13 20 20 C 1.38751 * 119.89099 * 359.46460 * 7 6 5 21 21 N 1.47996 * 120.02928 * 180.27837 * 20 7 6 22 22 O 1.21795 * 120.00432 * 180.02562 * 21 20 7 23 23 O 1.21802 * 120.00134 * 359.97438 * 21 20 7 24 24 C 1.38127 * 119.94329 * 0.25599 * 20 7 6 25 25 H 0.96702 * 113.99995 * 60.00462 * 1 2 3 26 26 H 1.09002 * 109.47324 * 120.00015 * 2 1 3 27 27 H 1.48492 * 109.99931 * 59.99710 * 3 2 1 28 28 H 1.48496 * 110.00106 * 181.31628 * 3 2 1 29 29 H 1.07999 * 119.97833 * 359.97438 * 5 4 2 30 30 H 1.08001 * 120.02825 * 180.25113 * 6 5 4 31 31 H 1.09007 * 109.47008 * 60.00166 * 9 8 7 32 32 H 1.08999 * 109.46810 * 300.00232 * 9 8 7 33 33 H 0.96998 * 119.99913 * 0.02562 * 12 10 9 34 34 H 1.09006 * 113.61280 * 203.67416 * 15 13 12 35 35 H 1.08999 * 113.61062 * 334.49170 * 15 13 12 36 36 H 0.96701 * 113.99636 * 277.49879 * 18 16 15 37 37 H 1.09004 * 113.61451 * 220.02152 * 19 16 15 38 38 H 1.08994 * 113.61477 * 89.11454 * 19 16 15 39 39 H 1.08000 * 119.97136 * 179.97438 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7264 -0.0376 -2.1395 6 6 3.1930 -0.6883 -3.2655 7 6 2.8539 -2.0147 -3.4890 8 8 3.3072 -2.6554 -4.5984 9 6 4.1241 -1.9004 -5.4954 10 6 4.5299 -2.7695 -6.6577 11 8 4.1568 -3.9222 -6.7122 12 7 5.3075 -2.2659 -7.6366 13 6 5.7025 -3.1109 -8.7662 14 1 5.6784 -4.1743 -8.5280 15 6 4.9882 -2.7579 -10.0814 16 6 6.1370 -1.7714 -10.3491 17 1 6.4638 -1.7534 -11.3889 18 8 5.9066 -0.4659 -9.8158 19 6 7.0069 -2.6613 -9.4455 20 6 2.0557 -2.6878 -2.5751 21 7 1.6971 -4.1047 -2.8075 22 8 0.9960 -4.6949 -2.0053 23 8 2.1022 -4.6804 -3.8015 24 6 1.5965 -2.0344 -1.4481 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5615 2.4679 1.2084 28 1 3.5346 1.7703 -0.0321 29 1 2.9865 0.9964 -1.9673 30 1 3.8175 -0.1635 -3.9732 31 1 5.0156 -1.5551 -4.9718 32 1 3.5626 -1.0412 -5.8623 33 1 5.6063 -1.3441 -7.5927 34 1 4.9475 -3.5839 -10.7915 35 1 4.0214 -2.2756 -9.9373 36 1 5.3600 0.0985 -10.3797 37 1 7.6704 -2.0996 -8.7880 38 1 7.5180 -3.4608 -9.9817 39 1 0.9749 -2.5577 -0.7367 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_4549638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:02:40 Heat of formation + Delta-G solvation = -87.497902 kcal Electronic energy + Delta-G solvation = -27445.822321 eV Core-core repulsion = 23132.530115 eV Total energy + Delta-G solvation = -4313.292206 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.31058 -41.84683 -41.20225 -39.97080 -39.12884 -37.60616 -37.37337 -36.01752 -34.06768 -33.45751 -32.24562 -29.90983 -27.83705 -26.75680 -26.63662 -25.36826 -24.01404 -22.85712 -21.92123 -20.66781 -20.50553 -19.79191 -19.17220 -18.79530 -18.65532 -18.18768 -17.87550 -17.59560 -17.26882 -16.85206 -16.34031 -16.21647 -16.11462 -15.66697 -15.57639 -15.33095 -14.84994 -14.72247 -14.07086 -14.00528 -13.77452 -13.59287 -13.50453 -13.24060 -12.72103 -12.66568 -12.40353 -12.30726 -12.28961 -12.25999 -12.20229 -11.95143 -11.45113 -11.07010 -10.85226 -10.67103 -10.56942 -10.13391 -9.80530 -4.99741 -1.32905 -0.25860 0.14247 0.33849 1.18007 1.26880 1.40641 1.64041 2.01413 2.04357 2.29426 3.09770 3.12570 3.24209 3.37683 3.49538 3.50153 3.57683 3.69982 3.76971 3.79267 3.85682 3.89837 3.99049 4.16525 4.27774 4.35081 4.49979 4.62005 4.71575 4.73689 4.82408 4.82991 4.88726 4.98932 5.03640 5.06134 5.17810 5.51957 5.73887 6.40445 6.44314 6.73241 6.88014 7.13559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.082 4.082 3 Si 0.799 3.201 4 C -0.149 4.149 5 C -0.004 4.004 6 C -0.189 4.189 7 C 0.192 3.808 8 O -0.292 6.292 9 C 0.027 3.973 10 C 0.507 3.493 11 O -0.568 6.568 12 N -0.686 5.686 13 C 0.109 3.891 14 H 0.078 0.922 15 C -0.183 4.183 16 C 0.087 3.913 17 H 0.087 0.913 18 O -0.564 6.564 19 C -0.134 4.134 20 C -0.104 4.104 21 N 0.035 4.965 22 O -0.200 6.200 23 O -0.177 6.177 24 C -0.003 4.003 25 H 0.398 0.602 26 H 0.110 0.890 27 H -0.305 1.305 28 H -0.264 1.264 29 H 0.189 0.811 30 H 0.205 0.795 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.422 0.578 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 14.668 -5.517 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.190 4.190 3 Si 0.702 3.298 4 C -0.151 4.151 5 C -0.021 4.021 6 C -0.207 4.207 7 C 0.142 3.858 8 O -0.202 6.202 9 C -0.049 4.049 10 C 0.293 3.707 11 O -0.445 6.445 12 N -0.340 5.340 13 C 0.004 3.996 14 H 0.096 0.904 15 C -0.222 4.222 16 C 0.028 3.972 17 H 0.105 0.895 18 O -0.373 6.373 19 C -0.172 4.172 20 C -0.189 4.189 21 N 0.545 4.455 22 O -0.408 6.408 23 O -0.390 6.390 24 C -0.022 4.022 25 H 0.248 0.752 26 H 0.127 0.873 27 H -0.233 1.233 28 H -0.190 1.190 29 H 0.206 0.794 30 H 0.221 0.779 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.261 0.739 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.930 14.309 -4.086 16.019 hybrid contribution -0.601 -1.252 -0.126 1.395 sum 5.329 13.057 -4.212 14.718 Atomic orbital electron populations 1.86528 1.17206 1.82220 1.50626 1.25476 0.85501 1.12039 0.95961 0.93794 0.77956 0.72570 0.85436 1.20467 1.02074 0.92660 0.99900 1.21721 0.89434 1.01181 0.89805 1.21807 1.05980 0.90528 1.02426 1.18985 0.89706 0.92122 0.84956 1.86469 1.63586 1.39739 1.30372 1.23070 0.98070 0.94434 0.89360 1.20555 0.78566 0.87680 0.83901 1.90834 1.55079 1.20183 1.78431 1.45351 1.51046 1.16499 1.21149 1.21897 0.96843 0.95031 0.85878 0.90372 1.24147 0.99352 1.01294 0.97446 1.22716 0.94664 0.82485 0.97365 0.89491 1.86289 1.75024 1.24276 1.51679 1.23470 0.95557 0.99570 0.98614 1.20862 1.13442 0.81517 1.03110 1.43895 0.98212 1.03994 0.99445 1.94498 1.35857 1.68336 1.42124 1.94684 1.56507 1.69377 1.18400 1.20847 0.94151 0.94779 0.92413 0.75175 0.87255 1.23349 1.19022 0.79422 0.77858 0.84117 0.83766 0.73918 0.87742 0.91277 0.74884 0.89749 0.85976 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.91 12.77 -148.98 -1.90 0.00 16 2 C -0.08 0.49 2.82 71.24 0.20 0.69 16 3 Si 0.80 -8.02 29.78 68.60 2.04 -5.98 16 4 C -0.15 0.80 5.39 -19.85 -0.11 0.69 16 5 C 0.00 0.05 8.66 22.25 0.19 0.24 16 6 C -0.19 1.89 9.04 22.37 0.20 2.09 16 7 C 0.19 0.28 6.67 22.51 0.15 0.43 16 8 O -0.29 -1.69 7.68 -63.39 -0.49 -2.18 16 9 C 0.03 -0.15 5.22 71.24 0.37 0.23 16 10 C 0.51 1.81 7.91 87.66 0.69 2.50 16 11 O -0.57 -9.57 16.10 16.02 0.26 -9.31 16 12 N -0.69 1.76 5.15 -440.04 -2.27 -0.50 16 13 C 0.11 -0.08 4.32 45.52 0.20 0.12 16 14 H 0.08 0.39 7.46 -2.39 -0.02 0.37 16 15 C -0.18 0.67 7.71 31.12 0.24 0.91 16 16 C 0.09 -0.63 5.28 31.12 0.16 -0.47 16 17 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 18 O -0.56 4.69 12.32 -148.98 -1.84 2.86 16 19 C -0.13 0.78 7.66 31.12 0.24 1.02 16 20 C -0.10 -0.80 6.87 36.48 0.25 -0.55 16 21 N 0.03 0.60 4.45 -46.25 -0.21 0.40 16 22 O -0.20 -3.84 18.45 18.89 0.35 -3.50 16 23 O -0.18 -4.00 17.24 25.61 0.44 -3.56 16 24 C 0.00 -0.01 9.12 22.25 0.20 0.20 16 25 H 0.40 -4.82 8.70 -74.06 -0.64 -5.47 16 26 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 27 H -0.31 0.09 7.11 99.48 0.71 0.80 16 28 H -0.26 2.10 7.11 99.48 0.71 2.81 16 29 H 0.19 -3.57 4.87 -2.91 -0.01 -3.59 16 30 H 0.20 -4.00 6.30 -2.91 -0.02 -4.02 16 31 H 0.14 -1.91 7.65 -2.38 -0.02 -1.93 16 32 H 0.14 -2.04 7.67 -2.39 -0.02 -2.05 16 33 H 0.42 -3.55 7.60 -92.71 -0.70 -4.25 16 34 H 0.10 -0.48 8.14 -2.38 -0.02 -0.50 16 35 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.40 -5.99 9.12 -74.06 -0.68 -6.67 16 37 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.15 0.64 7.61 -2.91 -0.02 0.62 16 Total: 0.00 -39.07 340.48 -1.45 -40.51 By element: Atomic # 1 Polarization: -26.00 SS G_CDS: -0.84 Total: -26.84 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 3.00 Total: 8.09 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -2.47 Total: -0.11 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -3.18 Total: -15.69 kcal Atomic # 14 Polarization: -8.02 SS G_CDS: 2.04 Total: -5.98 kcal Total: -39.07 -1.45 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_4549638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.984 kcal (2) G-P(sol) polarization free energy of solvation -39.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds