Wall clock time and date at job start Sun Mar 7 2021 22:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35996 * 116.99963 * 2 1 4 4 C 1.39150 * 120.06970 * 179.97438 * 3 2 1 5 5 O 1.35987 * 120.07533 * 359.97438 * 4 3 2 6 6 C 1.42902 * 116.99930 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47149 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00062 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00039 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99880 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.85227 * 25.32468 * 10 9 7 12 12 C 1.53783 * 113.61445 * 156.52454 * 10 9 7 13 13 C 1.53784 * 87.07731 * 139.97645 * 12 10 9 14 14 H 1.09003 * 113.61415 * 89.11939 * 13 12 10 15 15 O 1.42901 * 113.61278 * 219.93406 * 13 12 10 16 16 C 1.53785 * 113.60932 * 254.13257 * 10 9 7 17 17 C 1.38570 * 119.85007 * 180.02562 * 4 3 2 18 18 C 1.38238 * 119.99772 * 0.25849 * 17 4 3 19 19 C 1.38254 * 120.15025 * 359.48447 * 18 17 4 20 20 C 1.50695 * 119.92992 * 180.25886 * 19 18 17 21 21 O 1.42902 * 109.47056 * 245.25338 * 20 19 18 22 22 Si 1.86301 * 109.46922 * 5.25499 * 20 19 18 23 23 C 1.38247 * 120.14245 * 0.51541 * 19 18 17 24 24 H 1.09000 * 109.46792 * 299.99909 * 1 2 3 25 25 H 1.08998 * 109.46848 * 60.00277 * 1 2 3 26 26 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47301 * 300.00327 * 6 5 4 28 28 H 1.09003 * 109.47154 * 60.00691 * 6 5 4 29 29 H 0.96991 * 119.99925 * 359.97438 * 9 7 6 30 30 H 1.08997 * 113.61066 * 254.52836 * 12 10 9 31 31 H 1.09000 * 113.61018 * 25.34524 * 12 10 9 32 32 H 0.96699 * 114.00408 * 180.02562 * 15 13 12 33 33 H 1.08998 * 113.61334 * 334.56487 * 16 10 9 34 34 H 1.08994 * 113.61554 * 105.47414 * 16 10 9 35 35 H 1.08002 * 119.99648 * 179.97438 * 17 4 3 36 36 H 1.08000 * 119.92674 * 179.74797 * 18 17 4 37 37 H 1.09000 * 109.47310 * 125.25869 * 20 19 18 38 38 H 0.96703 * 113.99984 * 179.97438 * 21 20 19 39 39 H 1.48504 * 109.99835 * 178.68385 * 22 20 19 40 40 H 1.48496 * 110.00210 * 299.99620 * 22 20 19 41 41 H 1.08001 * 119.99709 * 179.76743 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1477 0.0016 6 6 5.6003 0.3007 0.0027 7 6 6.2519 -1.0582 0.0031 8 8 5.5670 -2.0591 0.0030 9 7 7.5958 -1.1612 0.0046 10 6 8.2292 -2.4822 0.0045 11 1 7.5940 -3.2562 -0.4265 12 6 9.6616 -2.4786 -0.5551 13 6 10.0183 -3.4679 0.5669 14 1 9.8727 -4.5123 0.2907 15 8 11.2948 -3.2238 1.1608 16 6 8.8412 -2.8720 1.3604 17 6 4.0604 2.5233 0.0011 18 6 3.3030 3.6798 0.0065 19 6 1.9224 3.6057 0.0006 20 6 1.1017 4.8695 0.0006 21 8 0.3642 4.9585 1.2214 22 14 2.2310 6.3434 -0.1516 23 6 1.2932 2.3747 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 5.9073 0.8501 -0.8873 28 1 5.9059 0.8507 0.8927 29 1 8.1435 -0.3608 0.0051 30 1 9.7407 -2.9052 -1.5550 31 1 10.1630 -1.5149 -0.4651 32 1 11.5251 -3.8430 1.8670 33 1 9.1185 -2.0165 1.9763 34 1 8.2593 -3.6157 1.9045 35 1 5.1387 2.5839 0.0019 36 1 3.7908 4.6433 0.0110 37 1 0.4097 4.8534 -0.8414 38 1 -0.1876 5.7496 1.2908 39 1 1.4317 7.5945 -0.1847 40 1 3.1793 6.3768 0.9906 41 1 0.2146 2.3196 -0.0008 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_60476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:07 Heat of formation + Delta-G solvation = -126.952269 kcal Electronic energy + Delta-G solvation = -25155.909489 eV Core-core repulsion = 21197.703037 eV Total energy + Delta-G solvation = -3958.206451 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84069 -41.20115 -39.95380 -39.13095 -38.77664 -37.13846 -36.37139 -34.12532 -32.14362 -31.47606 -29.63925 -28.46472 -26.79526 -26.23330 -25.08312 -23.47654 -22.44165 -21.72090 -20.90391 -19.76046 -18.79920 -18.62684 -18.27657 -18.20577 -17.53585 -17.49568 -16.87788 -16.65120 -16.24412 -16.11036 -15.87850 -15.69881 -15.54987 -15.33898 -14.69763 -14.43489 -14.08534 -14.01244 -13.73224 -13.54629 -13.50988 -13.48793 -12.81129 -12.71657 -12.57922 -12.33297 -12.23003 -12.17370 -11.94762 -11.73944 -11.68067 -11.06976 -10.78919 -10.49489 -10.17296 -9.79193 -8.92732 -4.89583 0.15552 0.26330 1.31674 1.40506 1.46169 1.63496 1.97078 2.29887 2.50691 2.55138 3.31050 3.37367 3.40276 3.53179 3.65323 3.71042 3.79375 3.87357 3.88786 3.95817 4.03815 4.10385 4.16765 4.25819 4.30600 4.33083 4.46326 4.48004 4.62306 4.65518 4.70291 4.74074 4.92751 4.94466 4.98561 5.07510 5.09887 5.37923 5.43965 5.57321 5.95339 6.38518 6.52117 6.59189 6.84843 7.09944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.077 3.923 4 C 0.085 3.915 5 O -0.313 6.313 6 C 0.034 3.966 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.698 5.698 10 C 0.120 3.880 11 H 0.101 0.899 12 C -0.127 4.127 13 C 0.080 3.920 14 H 0.098 0.902 15 O -0.575 6.575 16 C -0.180 4.180 17 C -0.160 4.160 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.088 4.088 21 O -0.560 6.560 22 Si 0.773 3.227 23 C -0.152 4.152 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.422 0.578 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.396 0.604 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.395 0.605 39 H -0.289 1.289 40 H -0.292 1.292 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 4.790 -2.705 6.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.227 6.227 6 C -0.044 4.044 7 C 0.300 3.700 8 O -0.450 6.450 9 N -0.352 5.352 10 C 0.015 3.985 11 H 0.119 0.881 12 C -0.165 4.165 13 C 0.020 3.980 14 H 0.115 0.885 15 O -0.383 6.383 16 C -0.219 4.219 17 C -0.178 4.178 18 C -0.131 4.131 19 C -0.081 4.081 20 C -0.196 4.196 21 O -0.370 6.370 22 Si 0.678 3.322 23 C -0.170 4.170 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.260 0.740 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.194 0.806 36 H 0.172 0.828 37 H 0.111 0.889 38 H 0.245 0.755 39 H -0.216 1.216 40 H -0.219 1.219 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.718 4.330 -2.673 6.303 hybrid contribution -1.294 -0.022 1.331 1.856 sum 2.424 4.308 -1.343 5.123 Atomic orbital electron populations 1.23297 0.76780 1.05258 1.02110 1.86190 1.23055 1.26475 1.89093 1.18639 0.89897 0.85628 1.02688 1.18560 0.88225 0.86472 1.02802 1.86216 1.18186 1.28971 1.89317 1.22786 0.79377 0.95155 1.07074 1.20601 0.83055 0.90876 0.75461 1.90764 1.64091 1.40153 1.50024 1.45619 1.05135 1.09926 1.74518 1.22209 0.93056 0.85631 0.97592 0.88083 1.23419 0.92858 1.01347 0.98917 1.23160 0.82023 0.98796 0.94014 0.88466 1.86464 1.35682 1.60023 1.56172 1.24206 0.97991 1.02211 0.97527 1.21353 1.02242 0.89268 1.04917 1.20999 0.92457 0.99105 1.00540 1.19257 0.93824 0.93409 1.01626 1.25084 1.01209 1.04017 0.89288 1.86555 1.62949 1.48700 1.38809 0.94041 0.78794 0.72443 0.86949 1.21029 1.00599 0.90494 1.04921 0.92133 0.91339 0.86996 0.85101 0.85787 0.73995 0.89120 0.87765 0.75346 0.88695 0.91346 0.80616 0.82815 0.88880 0.75484 1.21630 1.21887 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.07 10.28 -79.63 -0.82 -4.89 16 3 C 0.08 0.75 6.70 22.57 0.15 0.90 16 4 C 0.08 0.62 6.70 22.57 0.15 0.77 16 5 O -0.31 -3.11 9.45 -66.99 -0.63 -3.75 16 6 C 0.03 -0.04 5.22 71.24 0.37 0.34 16 7 C 0.51 2.43 7.91 87.66 0.69 3.13 16 8 O -0.57 -9.62 16.12 16.01 0.26 -9.36 16 9 N -0.70 1.81 5.36 -440.01 -2.36 -0.55 16 10 C 0.12 -0.09 4.21 45.52 0.19 0.10 16 11 H 0.10 0.35 7.50 -2.38 -0.02 0.34 16 12 C -0.13 0.50 7.66 31.12 0.24 0.74 16 13 C 0.08 -0.23 5.21 31.18 0.16 -0.07 16 14 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 15 O -0.58 0.60 13.68 -148.98 -2.04 -1.44 16 16 C -0.18 0.26 7.73 31.18 0.24 0.50 16 17 C -0.16 0.04 9.04 22.35 0.20 0.24 16 18 C -0.11 0.01 8.66 22.27 0.19 0.21 16 19 C -0.08 -0.23 5.38 -19.86 -0.11 -0.34 16 20 C -0.09 0.08 2.79 71.23 0.20 0.28 16 21 O -0.56 -1.18 12.81 -148.98 -1.91 -3.09 16 22 Si 0.77 -2.78 29.85 68.60 2.05 -0.73 16 23 C -0.15 -0.87 8.67 22.35 0.19 -0.68 16 24 H 0.06 0.09 7.66 -2.39 -0.02 0.08 16 25 H 0.07 -0.01 7.66 -2.39 -0.02 -0.03 16 26 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.13 -1.13 7.66 -2.39 -0.02 -1.15 16 28 H 0.12 -0.93 7.66 -2.39 -0.02 -0.95 16 29 H 0.42 -4.26 8.71 -92.72 -0.81 -5.06 16 30 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.10 -0.54 8.11 -2.39 -0.02 -0.56 16 32 H 0.40 -3.33 9.12 -74.06 -0.68 -4.01 16 33 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.18 -1.54 6.30 -2.91 -0.02 -1.56 16 36 H 0.15 -0.79 4.85 -2.91 -0.01 -0.81 16 37 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 38 H 0.39 -2.40 8.74 -74.06 -0.65 -3.04 16 39 H -0.29 -0.26 7.11 99.48 0.71 0.45 16 40 H -0.29 -0.77 7.04 99.48 0.70 -0.07 16 41 H 0.14 0.47 6.30 -2.91 -0.02 0.45 16 Total: 0.00 -31.55 346.35 -2.46 -34.00 By element: Atomic # 1 Polarization: -16.49 SS G_CDS: -1.00 Total: -17.49 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 3.99 Total: 7.30 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.36 Total: -0.55 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -5.14 Total: -22.53 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.05 Total: -0.73 kcal Total: -31.55 -2.46 -34.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_60476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.948 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds