Wall clock time and date at job start Sun Mar 7 2021 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.35452 * 125.56161 * 244.69876 * 4 2 1 6 6 C 1.39839 * 107.86272 * 179.84270 * 5 4 2 7 7 C 1.37878 * 107.08526 * 0.41060 * 6 5 4 8 8 C 1.46676 * 126.23414 * 179.73052 * 7 6 5 9 9 O 1.21692 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99718 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99904 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84468 * 336.18645 * 11 10 8 13 13 C 1.53774 * 113.61775 * 107.49722 * 11 10 8 14 14 C 1.53781 * 87.08252 * 89.11706 * 13 11 10 15 15 H 1.09000 * 113.61565 * 139.98277 * 14 13 11 16 16 O 1.42903 * 113.68887 * 270.87226 * 14 13 11 17 17 C 1.53777 * 87.08063 * 25.42975 * 14 13 11 18 18 N 1.35534 * 125.56454 * 65.00013 * 4 2 1 19 19 H 0.96699 * 114.00604 * 59.99761 * 1 2 3 20 20 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 21 21 H 1.48498 * 110.00005 * 60.00258 * 3 2 1 22 22 H 1.48501 * 110.00049 * 181.31921 * 3 2 1 23 23 H 1.07997 * 126.06714 * 359.97438 * 5 4 2 24 24 H 1.07997 * 126.45994 * 180.15775 * 6 5 4 25 25 H 0.96995 * 120.00393 * 359.97438 * 10 8 7 26 26 H 1.09004 * 113.61238 * 203.66837 * 13 11 10 27 27 H 1.09002 * 113.61459 * 334.56689 * 13 11 10 28 28 H 0.96705 * 114.00195 * 277.53893 * 16 14 13 29 29 H 1.08998 * 113.61596 * 220.01636 * 17 14 13 30 30 H 1.09002 * 113.69012 * 89.13000 * 17 14 13 31 31 H 0.97000 * 125.67238 * 0.03222 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6380 -0.1406 2.2358 6 6 2.9077 -1.1309 3.1855 7 6 2.3535 -2.3032 2.7169 8 6 2.3946 -3.6090 3.3838 9 8 2.9582 -3.7271 4.4558 10 7 1.8083 -4.6778 2.8092 11 6 1.8489 -5.9819 3.4755 12 1 2.6836 -6.0765 4.1701 13 6 0.4979 -6.4119 4.0709 14 6 0.1923 -7.0576 2.7091 15 1 -0.3113 -8.0212 2.7860 16 8 -0.4414 -6.1726 1.7833 17 6 1.7130 -7.1713 2.5103 18 7 1.7549 -2.0250 1.5089 19 1 -0.3934 0.4417 -0.7650 20 1 1.7923 -0.5138 -0.8900 21 1 1.5614 2.4679 1.2085 22 1 3.5345 1.7704 -0.0321 23 1 2.9378 0.8953 2.2945 24 1 3.4515 -1.0027 4.1097 25 1 1.3588 -4.5836 1.9548 26 1 0.5886 -7.1313 4.8848 27 1 -0.1577 -5.5759 4.3147 28 1 -1.3980 -6.0968 1.9034 29 1 2.0383 -6.9485 1.4941 30 1 2.1371 -8.0980 2.8968 31 1 1.2853 -2.6636 0.9498 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_6580494.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:18 Heat of formation + Delta-G solvation = -37.413863 kcal Electronic energy + Delta-G solvation = -17071.556049 eV Core-core repulsion = 14128.472126 eV Total energy + Delta-G solvation = -2943.083923 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.47876 -41.11121 -39.31587 -37.74374 -36.17154 -34.03552 -32.07508 -31.40346 -27.19422 -26.90899 -25.34645 -23.12275 -21.61841 -21.11141 -20.60915 -19.71085 -18.60248 -18.31702 -17.08855 -16.91892 -16.36194 -16.03048 -15.79524 -15.44038 -15.10373 -14.87229 -14.64280 -14.30237 -13.88043 -13.61957 -13.59666 -13.42414 -12.80736 -12.69593 -12.44556 -12.00561 -11.60201 -11.10562 -10.85870 -10.57047 -10.11787 -10.04543 -9.21575 -5.05262 0.39594 1.11358 1.52796 1.68314 1.96860 2.01050 2.13289 2.41594 2.88512 3.21679 3.35226 3.57236 3.71966 3.74720 3.87838 3.98964 4.09728 4.25084 4.43360 4.53532 4.56347 4.68965 4.74954 4.86796 4.89514 5.01596 5.09148 5.48730 5.65010 5.83973 6.25188 6.42205 6.44413 6.55359 7.19037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.060 4.060 3 Si 0.717 3.283 4 C 0.068 3.932 5 C -0.207 4.207 6 C -0.097 4.097 7 C -0.049 4.049 8 C 0.592 3.408 9 O -0.526 6.526 10 N -0.708 5.708 11 C 0.125 3.875 12 H 0.107 0.893 13 C -0.185 4.185 14 C 0.077 3.923 15 H 0.073 0.927 16 O -0.556 6.556 17 C -0.142 4.142 18 N -0.520 5.520 19 H 0.387 0.613 20 H 0.075 0.925 21 H -0.248 1.248 22 H -0.252 1.252 23 H 0.143 0.857 24 H 0.154 0.846 25 H 0.402 0.598 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.386 0.614 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -0.640 -5.950 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.170 4.170 3 Si 0.616 3.384 4 C -0.050 4.050 5 C -0.231 4.231 6 C -0.123 4.123 7 C -0.163 4.163 8 C 0.380 3.620 9 O -0.402 6.402 10 N -0.359 5.359 11 C 0.020 3.980 12 H 0.125 0.875 13 C -0.224 4.224 14 C 0.017 3.983 15 H 0.091 0.909 16 O -0.363 6.363 17 C -0.180 4.180 18 N -0.116 5.116 19 H 0.235 0.765 20 H 0.093 0.907 21 H -0.172 1.172 22 H -0.176 1.176 23 H 0.161 0.839 24 H 0.172 0.828 25 H 0.237 0.763 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.234 0.766 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.735 -0.545 -4.468 4.824 hybrid contribution -1.072 -1.002 -0.300 1.498 sum -2.807 -1.547 -4.768 5.745 Atomic orbital electron populations 1.86488 1.17054 1.82003 1.50043 1.24530 0.85853 1.11384 0.95184 0.95186 0.80719 0.75489 0.87019 1.19951 1.03387 0.83795 0.97895 1.20578 1.07247 0.99801 0.95491 1.21283 1.01013 0.90002 1.00016 1.20418 1.09864 0.95857 0.90113 1.17033 0.78294 0.82116 0.84561 1.90860 1.44192 1.84294 1.20861 1.45547 1.57259 1.08286 1.24846 1.21776 0.98910 0.82032 0.95297 0.87474 1.24148 0.98341 1.01887 0.98043 1.22807 0.94170 0.92423 0.88859 0.90873 1.86330 1.26090 1.67163 1.56709 1.23463 0.94365 0.99007 1.01128 1.41940 1.42855 1.09257 1.17570 0.76502 0.90664 1.17175 1.17643 0.83908 0.82836 0.76272 0.88012 0.90376 0.76560 0.89927 0.86992 0.74403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.49 12.86 -35.23 -0.45 0.04 16 2 C -0.06 0.06 3.07 36.01 0.11 0.17 16 3 Si 0.72 -1.33 30.56 -169.99 -5.19 -6.52 16 4 C 0.07 0.15 6.50 -81.95 -0.53 -0.38 16 5 C -0.21 -0.71 9.32 -39.98 -0.37 -1.08 16 6 C -0.10 -0.42 10.65 -39.11 -0.42 -0.84 16 7 C -0.05 -0.19 7.06 -81.98 -0.58 -0.77 16 8 C 0.59 2.72 7.79 -12.86 -0.10 2.62 16 9 O -0.53 -4.20 16.48 5.20 0.09 -4.11 16 10 N -0.71 -1.15 5.15 -54.33 -0.28 -1.43 16 11 C 0.13 0.10 4.32 -67.12 -0.29 -0.19 16 12 H 0.11 0.22 7.46 -51.93 -0.39 -0.16 16 13 C -0.19 0.11 7.71 -25.92 -0.20 -0.09 16 14 C 0.08 -0.12 5.27 -25.92 -0.14 -0.26 16 15 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 16 O -0.56 0.78 12.32 -35.23 -0.43 0.34 16 17 C -0.14 0.19 7.66 -25.92 -0.20 -0.01 16 18 N -0.52 -0.88 5.99 -5.69 -0.03 -0.91 16 19 H 0.39 -2.33 8.74 45.56 0.40 -1.93 16 20 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 21 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 22 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 23 H 0.14 0.34 6.19 -52.49 -0.32 0.01 16 24 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 25 H 0.40 0.04 6.72 -40.82 -0.27 -0.23 16 26 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 27 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.39 -1.80 9.12 45.56 0.42 -1.38 16 29 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.42 -0.31 8.19 -40.82 -0.33 -0.65 16 LS Contribution 270.07 15.07 4.07 4.07 Total: 0.00 -9.22 270.07 -7.61 -16.83 By element: Atomic # 1 Polarization: -4.80 SS G_CDS: -2.65 Total: -7.46 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.72 Total: -0.84 kcal Atomic # 7 Polarization: -2.03 SS G_CDS: -0.31 Total: -2.35 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.80 Total: -3.73 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -5.19 Total: -6.52 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -9.22 -7.61 -16.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_6580494.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.588 kcal (2) G-P(sol) polarization free energy of solvation -9.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds