Wall clock time and date at job start Sun Mar 7 2021 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.35452 * 125.56161 * 244.69876 * 4 2 1 6 6 C 1.39839 * 107.86272 * 179.84270 * 5 4 2 7 7 C 1.37878 * 107.08526 * 0.41060 * 6 5 4 8 8 C 1.46676 * 126.23414 * 179.73052 * 7 6 5 9 9 O 1.21692 * 120.00096 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99718 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99904 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84468 * 336.18645 * 11 10 8 13 13 C 1.53774 * 113.61775 * 107.49722 * 11 10 8 14 14 C 1.53781 * 87.08252 * 89.11706 * 13 11 10 15 15 H 1.09000 * 113.61565 * 139.98277 * 14 13 11 16 16 O 1.42903 * 113.68887 * 270.87226 * 14 13 11 17 17 C 1.53777 * 87.08063 * 25.42975 * 14 13 11 18 18 N 1.35534 * 125.56454 * 65.00013 * 4 2 1 19 19 H 0.96699 * 114.00604 * 59.99761 * 1 2 3 20 20 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 21 21 H 1.48498 * 110.00005 * 60.00258 * 3 2 1 22 22 H 1.48501 * 110.00049 * 181.31921 * 3 2 1 23 23 H 1.07997 * 126.06714 * 359.97438 * 5 4 2 24 24 H 1.07997 * 126.45994 * 180.15775 * 6 5 4 25 25 H 0.96995 * 120.00393 * 359.97438 * 10 8 7 26 26 H 1.09004 * 113.61238 * 203.66837 * 13 11 10 27 27 H 1.09002 * 113.61459 * 334.56689 * 13 11 10 28 28 H 0.96705 * 114.00195 * 277.53893 * 16 14 13 29 29 H 1.08998 * 113.61596 * 220.01636 * 17 14 13 30 30 H 1.09002 * 113.69012 * 89.13000 * 17 14 13 31 31 H 0.97000 * 125.67238 * 0.03222 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6380 -0.1406 2.2358 6 6 2.9077 -1.1309 3.1855 7 6 2.3535 -2.3032 2.7169 8 6 2.3946 -3.6090 3.3838 9 8 2.9582 -3.7271 4.4558 10 7 1.8083 -4.6778 2.8092 11 6 1.8489 -5.9819 3.4755 12 1 2.6836 -6.0765 4.1701 13 6 0.4979 -6.4119 4.0709 14 6 0.1923 -7.0576 2.7091 15 1 -0.3113 -8.0212 2.7860 16 8 -0.4414 -6.1726 1.7833 17 6 1.7130 -7.1713 2.5103 18 7 1.7549 -2.0250 1.5089 19 1 -0.3934 0.4417 -0.7650 20 1 1.7923 -0.5138 -0.8900 21 1 1.5614 2.4679 1.2085 22 1 3.5345 1.7704 -0.0321 23 1 2.9378 0.8953 2.2945 24 1 3.4515 -1.0027 4.1097 25 1 1.3588 -4.5836 1.9548 26 1 0.5886 -7.1313 4.8848 27 1 -0.1577 -5.5759 4.3147 28 1 -1.3980 -6.0968 1.9034 29 1 2.0383 -6.9485 1.4941 30 1 2.1371 -8.0980 2.8968 31 1 1.2853 -2.6636 0.9498 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_6580494.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:18 Heat of formation + Delta-G solvation = -43.569478 kcal Electronic energy + Delta-G solvation = -17071.822976 eV Core-core repulsion = 14128.472126 eV Total energy + Delta-G solvation = -2943.350851 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 239.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.69344 -41.18423 -39.51923 -37.64975 -36.15461 -34.20377 -32.29864 -31.54018 -27.28369 -26.83417 -25.35999 -23.29788 -21.80433 -21.36557 -20.64261 -19.84799 -18.48240 -18.21570 -17.28438 -16.95407 -16.53020 -16.12116 -15.81914 -15.47995 -15.23633 -14.98367 -14.80267 -14.43476 -13.94418 -13.69783 -13.59094 -13.55719 -12.78723 -12.71237 -12.40801 -12.05096 -11.57626 -11.43657 -10.76315 -10.46804 -10.31960 -10.27699 -9.43873 -4.94098 0.13049 1.18040 1.32484 1.74707 1.81346 1.98854 2.09057 2.09793 3.05403 3.29455 3.41467 3.57683 3.74057 3.77721 3.80358 4.00141 4.08736 4.12499 4.37250 4.61383 4.66872 4.72846 4.74907 4.78242 4.84167 4.91130 4.96582 5.36319 5.43771 5.57151 6.14415 6.34206 6.77300 6.84300 6.92058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.065 4.065 3 Si 0.815 3.185 4 C 0.069 3.931 5 C -0.229 4.229 6 C -0.117 4.117 7 C -0.062 4.062 8 C 0.590 3.410 9 O -0.571 6.571 10 N -0.693 5.693 11 C 0.106 3.894 12 H 0.088 0.912 13 C -0.182 4.182 14 C 0.084 3.916 15 H 0.093 0.907 16 O -0.570 6.570 17 C -0.133 4.133 18 N -0.507 5.507 19 H 0.410 0.590 20 H 0.106 0.894 21 H -0.299 1.299 22 H -0.289 1.289 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.410 0.590 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.400 0.600 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -1.376 -7.760 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.174 4.174 3 Si 0.719 3.281 4 C -0.051 4.051 5 C -0.253 4.253 6 C -0.144 4.144 7 C -0.176 4.176 8 C 0.378 3.622 9 O -0.450 6.450 10 N -0.344 5.344 11 C 0.001 3.999 12 H 0.107 0.893 13 C -0.221 4.221 14 C 0.025 3.975 15 H 0.111 0.889 16 O -0.378 6.378 17 C -0.171 4.171 18 N -0.104 5.104 19 H 0.262 0.738 20 H 0.124 0.876 21 H -0.227 1.227 22 H -0.217 1.217 23 H 0.164 0.836 24 H 0.166 0.834 25 H 0.248 0.752 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.251 0.749 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.943 -1.318 -6.351 7.123 hybrid contribution -0.733 -0.725 0.271 1.067 sum -3.676 -2.043 -6.080 7.392 Atomic orbital electron populations 1.86432 1.16648 1.82611 1.51910 1.24695 0.86340 1.11684 0.94638 0.94219 0.77009 0.72795 0.84073 1.20529 1.02182 0.83876 0.98488 1.20744 1.08431 1.00012 0.96127 1.21430 1.01626 0.90885 1.00413 1.20317 1.10728 0.95462 0.91116 1.17174 0.78031 0.82869 0.84124 1.90825 1.46398 1.85003 1.22775 1.45468 1.56045 1.08020 1.24818 1.22016 0.99288 0.82343 0.96277 0.89343 1.24161 0.96879 1.01735 0.99321 1.22786 0.94074 0.92950 0.87710 0.88921 1.86292 1.27489 1.67337 1.56712 1.23495 0.94907 0.98467 1.00245 1.41899 1.42170 1.09474 1.16838 0.73751 0.87627 1.22665 1.21670 0.83646 0.83391 0.75239 0.86832 0.91811 0.74939 0.90256 0.85142 0.72934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.06 12.86 -148.98 -1.92 0.14 16 2 C -0.06 0.21 3.07 71.24 0.22 0.43 16 3 Si 0.81 -3.29 30.56 68.60 2.10 -1.19 16 4 C 0.07 0.31 6.50 41.34 0.27 0.58 16 5 C -0.23 -1.90 9.32 22.01 0.21 -1.70 16 6 C -0.12 -1.29 10.65 22.57 0.24 -1.05 16 7 C -0.06 -0.58 7.06 40.35 0.28 -0.30 16 8 C 0.59 6.56 7.79 86.45 0.67 7.23 16 9 O -0.57 -10.76 16.48 -4.32 -0.07 -10.83 16 10 N -0.69 -2.91 5.15 -444.01 -2.29 -5.20 16 11 C 0.11 0.25 4.32 45.51 0.20 0.45 16 12 H 0.09 0.54 7.46 -2.39 -0.02 0.52 16 13 C -0.18 0.21 7.71 31.12 0.24 0.45 16 14 C 0.08 -0.37 5.27 31.12 0.16 -0.21 16 15 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 16 O -0.57 2.26 12.32 -148.98 -1.84 0.42 16 17 C -0.13 0.44 7.66 31.12 0.24 0.68 16 18 N -0.51 -1.79 5.99 -171.93 -1.03 -2.82 16 19 H 0.41 -5.96 8.74 -74.06 -0.65 -6.61 16 20 H 0.11 -0.92 7.96 -2.39 -0.02 -0.94 16 21 H -0.30 -1.33 7.11 99.48 0.71 -0.63 16 22 H -0.29 -0.62 7.11 99.48 0.71 0.09 16 23 H 0.15 0.96 6.19 -2.91 -0.02 0.94 16 24 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 25 H 0.41 0.14 6.72 -92.71 -0.62 -0.48 16 26 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 28 H 0.40 -4.23 9.12 -74.05 -0.68 -4.90 16 29 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H 0.43 -0.94 8.19 -92.71 -0.76 -1.69 16 Total: 0.00 -23.46 270.07 -3.78 -27.24 By element: Atomic # 1 Polarization: -12.88 SS G_CDS: -1.47 Total: -14.35 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 2.73 Total: 6.58 kcal Atomic # 7 Polarization: -4.70 SS G_CDS: -3.32 Total: -8.01 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -3.82 Total: -10.27 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.10 Total: -1.19 kcal Total: -23.46 -3.78 -27.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_6580494.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.326 kcal (2) G-P(sol) polarization free energy of solvation -23.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds