Wall clock time and date at job start Sun Mar 7 2021 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35971 * 116.99860 * 2 1 4 4 C 1.39444 * 120.12307 * 180.02562 * 3 2 1 5 5 O 1.34780 * 133.24169 * 0.02562 * 4 3 2 6 6 C 1.34923 * 110.84254 * 179.66026 * 5 4 3 7 7 C 1.46997 * 125.14237 * 180.28548 * 6 5 4 8 8 O 1.21646 * 119.99929 * 180.19395 * 7 6 5 9 9 N 1.34773 * 119.99829 * 0.19079 * 7 6 5 10 10 C 1.46497 * 120.00239 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84592 * 334.66751 * 10 9 7 12 12 C 1.53778 * 113.61496 * 105.86610 * 10 9 7 13 13 C 1.54044 * 86.98513 * 89.16523 * 12 10 9 14 14 H 1.09001 * 113.62122 * 139.98092 * 13 12 10 15 15 O 1.42907 * 113.68803 * 270.87178 * 13 12 10 16 16 C 1.53778 * 113.61744 * 203.47675 * 10 9 7 17 17 C 1.35811 * 109.72097 * 0.45392 * 6 5 4 18 18 C 1.40607 * 119.13810 * 179.97438 * 4 3 2 19 19 C 1.39776 * 120.11806 * 0.04314 * 18 4 3 20 20 C 1.50707 * 120.09164 * 179.97438 * 19 18 4 21 21 O 1.42898 * 109.47207 * 74.99487 * 20 19 18 22 22 Si 1.86298 * 109.46997 * 194.99758 * 20 19 18 23 23 C 1.36627 * 119.81612 * 359.97438 * 19 18 4 24 24 C 1.38266 * 120.11920 * 359.97438 * 3 2 1 25 25 H 1.08998 * 109.47194 * 60.00085 * 1 2 3 26 26 H 1.08997 * 109.46868 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46758 * 300.00011 * 1 2 3 28 28 H 0.97008 * 119.99960 * 0.02562 * 9 7 6 29 29 H 1.09002 * 113.61475 * 203.67164 * 12 10 9 30 30 H 1.08999 * 113.61507 * 334.56874 * 12 10 9 31 31 H 0.96695 * 114.00037 * 277.52744 * 15 13 12 32 32 H 1.08995 * 113.61757 * 25.42983 * 16 10 9 33 33 H 1.09001 * 113.61998 * 156.25177 * 16 10 9 34 34 H 1.08002 * 126.96056 * 179.83705 * 17 6 5 35 35 H 1.09001 * 109.46761 * 314.99708 * 20 19 18 36 36 H 0.96702 * 113.99940 * 60.00015 * 21 20 19 37 37 H 1.48495 * 109.99805 * 180.02562 * 22 20 19 38 38 H 1.48500 * 109.99824 * 301.31821 * 22 20 19 39 39 H 1.07993 * 119.75496 * 180.02562 * 23 19 18 40 40 H 1.08001 * 119.65941 * 0.02569 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4386 1.2875 -0.0005 5 8 4.4141 0.3575 -0.0016 6 6 5.6317 0.9388 -0.0092 7 6 6.9131 0.2187 -0.0183 8 8 7.9595 0.8391 -0.0212 9 7 6.9287 -1.1289 -0.0235 10 6 8.2057 -1.8467 -0.0320 11 1 9.0176 -1.2610 -0.4634 12 6 8.5602 -2.4895 1.3193 13 6 7.7956 -3.7359 0.8348 14 1 8.2771 -4.6759 1.1044 15 8 6.4026 -3.7147 1.1533 16 6 8.1070 -3.2731 -0.5982 17 6 5.4944 2.2900 -0.0033 18 6 4.0553 2.5512 -0.0011 19 6 3.2764 3.7117 -0.0002 20 6 3.9380 5.0658 -0.0002 21 8 4.4596 5.3411 -1.3017 22 14 2.6865 6.3684 0.4557 23 6 1.9135 3.6152 0.0007 24 6 1.2956 2.3727 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 6.0943 -1.6237 -0.0215 29 1 9.6284 -2.6581 1.4558 30 1 8.0963 -1.9953 2.1729 31 1 6.2005 -4.0049 2.0533 32 1 7.2775 -3.4112 -1.2916 33 1 9.0511 -3.6552 -0.9864 34 1 6.2873 3.0233 -0.0046 35 1 4.7508 5.0730 0.7260 36 1 3.7904 5.3505 -1.9997 37 1 3.3263 7.7084 0.4586 38 1 1.5574 6.3474 -0.5086 39 1 1.3126 4.5125 0.0010 40 1 0.2173 2.3120 -0.0005 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_6672420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:21 Heat of formation + Delta-G solvation = -81.490680 kcal Electronic energy + Delta-G solvation = -26988.894463 eV Core-core repulsion = 22931.744712 eV Total energy + Delta-G solvation = -4057.149751 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.80338 -41.45268 -40.65018 -39.65104 -39.14615 -37.13463 -36.16194 -34.10163 -33.69802 -31.94293 -31.00719 -28.59940 -26.81010 -26.54697 -26.06552 -24.35071 -24.03962 -22.12721 -21.81308 -20.68407 -19.96765 -19.11670 -18.65238 -18.15224 -17.86234 -17.81679 -17.26617 -17.02208 -16.63818 -16.39446 -16.22333 -15.91042 -15.83209 -15.59697 -15.13518 -14.70936 -14.60003 -14.56783 -14.22945 -13.75238 -13.60244 -13.49675 -13.43140 -13.27750 -12.76212 -12.48610 -12.38480 -12.28187 -12.14035 -11.71594 -11.66851 -11.49295 -11.06319 -10.73119 -10.61865 -10.31861 -9.86624 -9.04208 -4.89034 -0.71941 0.06556 0.56587 1.14068 1.29825 1.59490 1.81389 1.84256 1.97841 2.11589 2.36132 3.04426 3.17625 3.36941 3.42784 3.52765 3.62949 3.68172 3.78296 3.79641 3.84093 3.94883 4.10930 4.14766 4.31067 4.40912 4.41478 4.47619 4.61806 4.70001 4.74573 4.75286 4.79142 4.80705 4.83897 4.93784 4.98202 5.01696 5.18472 5.28244 5.39617 5.56168 6.16504 6.26844 6.49227 6.76548 6.82982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.137 3.863 4 C 0.020 3.980 5 O -0.182 6.182 6 C -0.035 4.035 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.682 5.682 10 C 0.104 3.896 11 H 0.095 0.905 12 C -0.179 4.179 13 C 0.081 3.919 14 H 0.094 0.906 15 O -0.571 6.571 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.099 4.099 20 C -0.091 4.091 21 O -0.548 6.548 22 Si 0.784 3.216 23 C -0.088 4.088 24 C -0.164 4.164 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.417 0.583 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.173 0.827 35 H 0.114 0.886 36 H 0.386 0.614 37 H -0.304 1.304 38 H -0.261 1.261 39 H 0.167 0.833 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 -3.108 2.878 7.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.091 3.909 4 C -0.028 4.028 5 O -0.085 6.085 6 C -0.085 4.085 7 C 0.386 3.614 8 O -0.427 6.427 9 N -0.332 5.332 10 C 0.000 4.000 11 H 0.113 0.887 12 C -0.218 4.218 13 C 0.022 3.978 14 H 0.112 0.888 15 O -0.379 6.379 16 C -0.172 4.172 17 C -0.131 4.131 18 C -0.097 4.097 19 C -0.100 4.100 20 C -0.198 4.198 21 O -0.356 6.356 22 Si 0.687 3.313 23 C -0.105 4.105 24 C -0.183 4.183 25 H 0.092 0.908 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.255 0.745 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.250 0.750 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.190 0.810 35 H 0.132 0.868 36 H 0.236 0.764 37 H -0.233 1.233 38 H -0.187 1.187 39 H 0.184 0.816 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.512 -2.279 2.344 6.409 hybrid contribution 0.035 -0.500 -0.661 0.829 sum -5.478 -2.780 1.684 6.369 Atomic orbital electron populations 1.23498 0.75250 1.06039 1.03229 1.86158 1.24397 1.25861 1.88427 1.18002 0.86041 0.86909 0.99944 1.19271 0.88320 0.87130 1.08115 1.84035 1.12776 1.35176 1.76471 1.21924 0.83986 0.92786 1.09837 1.16726 0.85161 0.82739 0.76738 1.90872 1.31338 1.68236 1.52237 1.45608 1.10947 1.04667 1.71974 1.22109 0.85525 0.93508 0.98900 0.88666 1.24195 1.02888 0.97901 0.96769 1.22880 0.81854 0.97295 0.95799 0.88809 1.86354 1.23291 1.90366 1.37937 1.23508 1.04468 0.92845 0.96420 1.22854 0.95503 0.94219 1.00554 1.19579 0.92222 0.92829 1.05087 1.19566 0.93488 0.93830 1.03123 1.25426 1.07832 0.98654 0.87938 1.86607 1.38980 1.92771 1.17275 0.93864 0.75372 0.73321 0.88702 1.20895 0.92872 0.98847 0.97920 1.21385 1.01828 0.89513 1.05533 0.90778 0.86672 0.90335 0.74530 0.86375 0.91602 0.75037 0.90586 0.84740 0.80974 0.86770 0.76434 1.23263 1.18675 0.81568 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.32 10.50 -93.23 -0.98 -2.30 16 3 C 0.14 0.60 6.70 22.57 0.15 0.75 16 4 C 0.02 0.18 7.35 23.14 0.17 0.35 16 5 O -0.18 -2.07 10.28 -13.40 -0.14 -2.21 16 6 C -0.04 -0.40 7.07 24.00 0.17 -0.23 16 7 C 0.60 7.07 7.80 86.54 0.67 7.74 16 8 O -0.55 -9.34 16.44 -4.18 -0.07 -9.41 16 9 N -0.68 -4.55 5.14 -443.72 -2.28 -6.82 16 10 C 0.10 0.31 4.30 45.52 0.20 0.50 16 11 H 0.10 0.50 7.50 -2.38 -0.02 0.48 16 12 C -0.18 0.16 7.73 31.21 0.24 0.40 16 13 C 0.08 -0.24 5.28 31.21 0.16 -0.07 16 14 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 15 O -0.57 0.47 12.35 -148.98 -1.84 -1.37 16 16 C -0.13 0.27 7.65 31.12 0.24 0.51 16 17 C -0.11 -1.12 10.68 23.79 0.25 -0.87 16 18 C -0.10 -0.75 6.16 -20.24 -0.12 -0.88 16 19 C -0.10 -0.22 5.26 -19.87 -0.10 -0.32 16 20 C -0.09 -0.08 2.70 71.24 0.19 0.11 16 21 O -0.55 -2.41 12.88 -148.98 -1.92 -4.33 16 22 Si 0.78 -2.75 30.25 68.60 2.08 -0.68 16 23 C -0.09 0.22 8.62 22.02 0.19 0.41 16 24 C -0.16 0.38 9.03 22.40 0.20 0.58 16 25 H 0.07 -0.66 7.66 -2.39 -0.02 -0.68 16 26 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.08 -0.75 7.66 -2.38 -0.02 -0.77 16 28 H 0.42 2.44 7.35 -92.70 -0.68 1.76 16 29 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.40 -3.15 9.12 -74.06 -0.68 -3.82 16 32 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.11 0.13 7.96 -2.39 -0.02 0.11 16 36 H 0.39 -0.82 8.70 -74.06 -0.64 -1.47 16 37 H -0.30 -1.48 7.11 99.48 0.71 -0.78 16 38 H -0.26 0.75 6.69 99.48 0.67 1.42 16 39 H 0.17 -1.34 4.81 -2.91 -0.01 -1.36 16 40 H 0.18 -1.73 6.26 -2.91 -0.02 -1.75 16 Total: 0.00 -23.04 341.71 -2.30 -25.33 By element: Atomic # 1 Polarization: -7.37 SS G_CDS: -0.87 Total: -8.24 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 3.73 Total: 10.02 kcal Atomic # 7 Polarization: -4.55 SS G_CDS: -2.28 Total: -6.82 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -4.94 Total: -19.61 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.08 Total: -0.68 kcal Total: -23.04 -2.30 -25.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_6672420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.159 kcal (2) G-P(sol) polarization free energy of solvation -23.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds