Wall clock time and date at job start Sun Mar 7 2021 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33815 * 122.45067 * 2 1 4 4 C 1.50703 * 124.51906 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47225 * 113.45480 * 4 3 2 6 6 Si 1.86302 * 109.47066 * 233.45482 * 4 3 2 7 7 S 1.70615 * 110.95964 * 180.02562 * 3 2 1 8 8 C 1.75836 * 91.55958 * 0.02562 * 7 3 2 9 9 C 1.46586 * 125.45237 * 180.02562 * 8 7 3 10 10 O 1.21707 * 119.99500 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00468 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99832 * 179.72572 * 11 9 8 13 13 H 1.09001 * 112.85309 * 334.94047 * 12 11 9 14 14 C 1.53784 * 113.61633 * 106.13654 * 12 11 9 15 15 C 1.54050 * 86.98219 * 89.15866 * 14 12 11 16 16 H 1.09009 * 113.62038 * 139.98305 * 15 14 12 17 17 O 1.42897 * 113.69402 * 270.87298 * 15 14 12 18 18 C 1.53781 * 87.07998 * 25.43399 * 15 14 12 19 19 C 1.36641 * 109.08540 * 0.26257 * 8 7 3 20 20 H 1.08995 * 109.47506 * 85.00927 * 1 2 3 21 21 H 1.09004 * 109.46731 * 205.00875 * 1 2 3 22 22 H 1.08996 * 109.46799 * 325.00560 * 1 2 3 23 23 H 1.08997 * 109.47287 * 353.45059 * 4 3 2 24 24 H 0.96702 * 113.99770 * 179.97438 * 5 4 3 25 25 H 1.48501 * 109.99914 * 300.00103 * 6 4 3 26 26 H 1.48496 * 110.00323 * 61.31610 * 6 4 3 27 27 H 0.97002 * 119.99387 * 359.97438 * 11 9 8 28 28 H 1.08991 * 113.61584 * 203.66116 * 14 12 11 29 29 H 1.09001 * 113.60921 * 334.56956 * 14 12 11 30 30 H 0.96701 * 114.00114 * 277.53745 * 17 15 14 31 31 H 1.08997 * 113.61336 * 220.01841 * 18 15 14 32 32 H 1.09001 * 113.69112 * 89.12795 * 18 15 14 33 33 H 1.07997 * 123.35104 * 179.74172 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 0.0006 5 8 1.9431 3.1640 1.2365 6 14 2.3545 3.4971 -1.4106 7 16 3.8970 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0018 9 6 4.6233 -1.9861 -0.0023 10 8 4.3003 -3.1596 -0.0035 11 7 5.9274 -1.6462 -0.0013 12 6 6.9562 -2.6891 0.0043 13 1 6.6050 -3.6278 0.4326 14 6 7.6699 -2.8576 -1.3475 15 6 8.6708 -1.7930 -0.8595 16 1 9.7045 -2.0091 -1.1296 17 8 8.2835 -0.4540 -1.1740 18 6 8.3061 -2.2197 0.5722 19 6 2.2447 -1.1601 -0.0075 20 1 -0.3634 0.0894 -1.0237 21 1 -0.3633 -0.9314 0.4345 22 1 -0.3633 0.8419 0.5894 23 1 0.5537 2.4511 -0.1163 24 1 1.5942 4.0632 1.3067 25 1 3.8291 3.5930 -1.2631 26 1 2.0145 2.8510 -2.7037 27 1 6.1847 -0.7109 -0.0007 28 1 8.1141 -3.8431 -1.4867 29 1 7.0711 -2.5377 -2.2002 30 1 8.5102 -0.1798 -2.0732 31 1 8.2206 -1.3852 1.2681 32 1 8.9233 -3.0310 0.9580 33 1 1.8021 -2.1452 -0.0133 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_6739946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:24 Heat of formation + Delta-G solvation = -58.447457 kcal Electronic energy + Delta-G solvation = -18538.544683 eV Core-core repulsion = 15465.363072 eV Total energy + Delta-G solvation = -3073.181610 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53970 -40.20778 -39.37566 -37.52610 -36.16733 -34.18777 -32.47764 -30.00260 -27.32199 -26.85603 -25.27035 -24.10752 -22.10046 -20.82063 -20.03396 -19.44129 -18.48843 -18.24623 -17.52879 -17.21070 -16.50385 -16.31595 -15.90459 -15.76869 -15.30358 -15.07553 -14.73820 -14.41486 -14.30366 -13.79810 -13.63948 -13.37687 -13.18684 -13.05263 -12.80102 -12.66360 -12.43928 -12.32639 -11.91801 -11.58003 -11.42266 -10.78088 -10.63095 -10.31865 -9.89012 -9.59508 -5.13898 -0.84590 0.17192 0.60618 0.97948 1.23217 1.56958 1.82846 1.87675 1.89985 3.03697 3.20770 3.38427 3.49174 3.68819 3.74983 3.79883 3.95366 4.07149 4.12971 4.32064 4.43464 4.55531 4.65195 4.66891 4.72009 4.74744 4.76070 4.88708 4.89570 4.94666 5.17055 5.29128 5.37663 6.19641 6.76384 6.82714 6.85616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.046 4.046 5 O -0.560 6.560 6 Si 0.762 3.238 7 S 0.216 5.784 8 C -0.287 4.287 9 C 0.589 3.411 10 O -0.568 6.568 11 N -0.694 5.694 12 C 0.105 3.895 13 H 0.091 0.909 14 C -0.180 4.180 15 C 0.082 3.918 16 H 0.096 0.904 17 O -0.571 6.571 18 C -0.135 4.135 19 C -0.053 4.053 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.409 0.591 25 H -0.279 1.279 26 H -0.288 1.288 27 H 0.409 0.591 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 5.953 -1.629 6.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.322 4.322 4 C -0.157 4.157 5 O -0.371 6.371 6 Si 0.665 3.335 7 S 0.486 5.514 8 C -0.407 4.407 9 C 0.376 3.624 10 O -0.449 6.449 11 N -0.345 5.345 12 C 0.000 4.000 13 H 0.109 0.891 14 C -0.219 4.219 15 C 0.023 3.977 16 H 0.114 0.886 17 O -0.380 6.380 18 C -0.173 4.173 19 C -0.086 4.086 20 H 0.105 0.895 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.131 0.869 24 H 0.261 0.739 25 H -0.205 1.205 26 H -0.215 1.215 27 H 0.247 0.753 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.250 0.750 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.905 5.480 -1.579 6.012 hybrid contribution -1.056 -1.233 -0.381 1.668 sum 0.849 4.246 -1.959 4.753 Atomic orbital electron populations 1.20692 0.86836 1.04392 1.03770 1.18976 0.99712 0.90055 1.03208 1.23721 0.98378 0.99894 1.10198 1.24305 1.04336 0.90264 0.96794 1.86469 1.80697 1.34671 1.35294 0.94611 0.79345 0.86109 0.73406 1.83106 1.04329 0.96686 1.67260 1.24635 0.98254 0.97877 1.19968 1.17168 0.82469 0.87109 0.75628 1.90803 1.82321 1.19563 1.52241 1.45555 1.04293 1.10912 1.73751 1.22057 0.87811 0.91406 0.98774 0.89097 1.24202 0.98950 1.01945 0.96804 1.22871 0.97445 0.81595 0.95768 0.88624 1.86332 1.84729 1.28874 1.38080 1.23517 0.94729 1.02592 0.96435 1.20880 0.90918 1.00652 0.96190 0.89536 0.90347 0.89649 0.86912 0.73888 1.20515 1.21472 0.75331 0.86487 0.91802 0.74987 0.90505 0.84753 0.82479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.15 9.48 71.24 0.68 0.82 16 2 C -0.11 -0.52 5.78 -21.05 -0.12 -0.64 16 3 C -0.20 -1.00 4.86 24.68 0.12 -0.88 16 4 C -0.05 0.08 2.76 71.24 0.20 0.27 16 5 O -0.56 1.04 12.86 -148.98 -1.92 -0.88 16 6 Si 0.76 -2.08 32.14 68.60 2.20 0.12 16 7 S 0.22 1.44 20.84 -56.49 -1.18 0.26 16 8 C -0.29 -2.91 6.45 24.08 0.16 -2.76 16 9 C 0.59 7.56 7.78 86.42 0.67 8.23 16 10 O -0.57 -10.92 16.46 -4.37 -0.07 -10.99 16 11 N -0.69 -5.24 5.14 -444.08 -2.28 -7.52 16 12 C 0.10 0.45 4.30 45.52 0.20 0.64 16 13 H 0.09 0.65 7.50 -2.39 -0.02 0.64 16 14 C -0.18 -0.03 7.73 31.21 0.24 0.21 16 15 C 0.08 -0.21 5.28 31.21 0.16 -0.04 16 16 H 0.10 -0.62 8.14 -2.38 -0.02 -0.64 16 17 O -0.57 0.52 12.35 -148.98 -1.84 -1.32 16 18 C -0.14 0.18 7.65 31.12 0.24 0.42 16 19 C -0.05 -0.44 9.78 21.72 0.21 -0.23 16 20 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 21 H 0.08 -0.17 8.11 -2.39 -0.02 -0.19 16 22 H 0.08 -0.33 6.98 -2.39 -0.02 -0.34 16 23 H 0.11 -0.75 6.24 -2.39 -0.01 -0.77 16 24 H 0.41 -5.26 8.74 -74.06 -0.65 -5.90 16 25 H -0.28 -1.02 7.11 99.48 0.71 -0.31 16 26 H -0.29 -1.06 7.11 99.48 0.71 -0.35 16 27 H 0.41 2.30 6.75 -92.71 -0.63 1.67 16 28 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.40 -3.23 9.12 -74.06 -0.68 -3.91 16 31 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.13 -0.80 8.14 -2.39 -0.02 -0.81 16 33 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -21.51 296.18 -3.07 -24.58 By element: Atomic # 1 Polarization: -9.56 SS G_CDS: -0.74 Total: -10.30 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 2.75 Total: 6.05 kcal Atomic # 7 Polarization: -5.24 SS G_CDS: -2.28 Total: -7.52 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -3.83 Total: -13.19 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.20 Total: 0.12 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.18 Total: 0.26 kcal Total: -21.51 -3.07 -24.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_6739946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -21.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds