Wall clock time and date at job start Sun Mar 7 2021 22:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46951 * 239.99882 * 2 1 3 5 5 C 1.34234 * 126.49984 * 105.02446 * 4 2 1 6 6 N 1.36833 * 109.93968 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.06343 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47361 * 265.02803 * 7 6 5 9 9 O 1.21286 * 119.99957 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00279 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00023 * 179.97438 * 10 8 7 12 12 H 1.08993 * 112.85151 * 23.79704 * 11 10 8 13 13 C 1.53782 * 113.61621 * 154.99923 * 11 10 8 14 14 C 1.53777 * 87.08222 * 139.97830 * 13 11 10 15 15 H 1.09000 * 113.61466 * 89.20183 * 14 13 11 16 16 O 1.42901 * 113.61269 * 220.01540 * 14 13 11 17 17 C 1.53781 * 87.08454 * 334.56759 * 14 13 11 18 18 C 1.37685 * 109.87352 * 0.02562 * 6 5 4 19 19 C 1.39088 * 133.51510 * 179.97438 * 18 6 5 20 20 C 1.37785 * 119.78038 * 180.02562 * 19 18 6 21 21 C 1.38798 * 120.66545 * 0.02562 * 20 19 18 22 22 C 1.36656 * 120.52612 * 359.97438 * 21 20 19 23 23 C 1.39593 * 119.76666 * 0.02562 * 22 21 20 24 24 H 0.96697 * 114.00299 * 60.00321 * 1 2 3 25 25 H 1.08998 * 109.47267 * 119.99891 * 2 1 3 26 26 H 1.48498 * 110.00083 * 59.99795 * 3 2 1 27 27 H 1.48504 * 110.00113 * 181.32425 * 3 2 1 28 28 H 1.08005 * 125.03160 * 359.69843 * 5 4 2 29 29 H 1.09003 * 109.46996 * 25.02642 * 7 6 5 30 30 H 1.09000 * 109.46996 * 145.02583 * 7 6 5 31 31 H 0.96998 * 120.00039 * 359.97438 * 10 8 7 32 32 H 1.09004 * 113.61152 * 254.52922 * 13 11 10 33 33 H 1.09001 * 113.61264 * 25.34458 * 13 11 10 34 34 H 0.96700 * 113.99791 * 179.97438 * 16 14 13 35 35 H 1.08999 * 113.61153 * 270.88674 * 17 14 13 36 36 H 1.08988 * 113.61541 * 139.97824 * 17 14 13 37 37 H 1.07996 * 120.10921 * 0.02562 * 19 18 6 38 38 H 1.07995 * 119.67135 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.73109 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.11680 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4612 -0.1377 -2.3228 6 7 2.8035 -1.0991 -3.2343 7 6 3.4093 -0.8406 -4.5429 8 6 2.3303 -0.7830 -5.5934 9 8 1.1696 -0.9428 -5.2799 10 7 2.6552 -0.5551 -6.8813 11 6 1.6063 -0.4998 -7.9026 12 1 0.6293 -0.2444 -7.4925 13 6 1.9923 0.3311 -9.1378 14 6 1.2978 -0.7490 -9.9839 15 1 0.2361 -0.5619 -10.1448 16 8 1.9944 -1.0666 -11.1905 17 6 1.5853 -1.7255 -8.8312 18 6 2.4939 -2.3457 -2.7384 19 6 2.6285 -3.6362 -3.2394 20 6 2.2136 -4.7106 -2.4832 21 6 1.6611 -4.5191 -1.2244 22 6 1.5195 -3.2599 -0.7128 23 6 1.9332 -2.1569 -1.4618 24 1 -0.3933 0.4416 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5615 2.4679 1.2084 27 1 3.5347 1.7703 -0.0322 28 1 2.5933 0.9250 -2.4634 29 1 3.9409 0.1107 -4.5156 30 1 4.1088 -1.6410 -4.7839 31 1 3.5835 -0.4277 -7.1321 32 1 1.5006 1.3030 -9.1812 33 1 3.0678 0.3930 -9.3036 34 1 1.5626 -1.7457 -11.7267 35 1 2.5495 -2.2270 -8.9141 36 1 0.7652 -2.4138 -8.6272 37 1 3.0568 -3.7955 -4.2179 38 1 2.3193 -5.7119 -2.8737 39 1 1.3405 -5.3721 -0.6447 40 1 1.0884 -3.1184 0.2673 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7348514_9818708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:39 Heat of formation + Delta-G solvation = -14.410340 kcal Electronic energy + Delta-G solvation = -24432.877759 eV Core-core repulsion = 20795.037685 eV Total energy + Delta-G solvation = -3637.840075 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49030 -41.21190 -39.68676 -37.98323 -37.50873 -36.46582 -34.36081 -33.75990 -31.34846 -30.12119 -29.02167 -26.96010 -26.10744 -24.88886 -23.58018 -22.57525 -21.77438 -21.10167 -20.54626 -18.96418 -18.55549 -18.38327 -17.66205 -17.25635 -16.79694 -16.53371 -16.31550 -16.22988 -15.85156 -15.41314 -15.29645 -15.02138 -14.66139 -14.55637 -14.38876 -13.98473 -13.83965 -13.68758 -13.63237 -13.36516 -12.82624 -12.60458 -12.48418 -12.41216 -12.10915 -12.01263 -11.89092 -11.67612 -11.16368 -10.94883 -10.42080 -10.24171 -10.20764 -9.02617 -8.53032 -5.01143 0.27574 0.79084 1.34831 1.38813 1.40807 1.67963 1.73187 2.03664 2.08758 3.08054 3.12412 3.24560 3.39601 3.47588 3.54264 3.64343 3.65837 3.75753 3.77309 3.81078 3.85800 4.08465 4.31014 4.31758 4.37105 4.52473 4.55703 4.57784 4.71078 4.74315 4.78473 4.79243 4.90141 4.93339 4.98539 5.25070 5.30455 5.64323 5.80581 5.86025 5.89762 6.14083 6.30596 6.36297 6.53653 6.78379 6.97221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.029 4.029 3 Si 0.682 3.318 4 C -0.198 4.198 5 C 0.068 3.932 6 N -0.466 5.466 7 C 0.091 3.909 8 C 0.493 3.507 9 O -0.513 6.513 10 N -0.717 5.717 11 C 0.125 3.875 12 H 0.120 0.880 13 C -0.136 4.136 14 C 0.079 3.921 15 H 0.088 0.912 16 O -0.558 6.558 17 C -0.183 4.183 18 C 0.109 3.891 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.066 4.066 23 C -0.087 4.087 24 H 0.377 0.623 25 H 0.110 0.890 26 H -0.254 1.254 27 H -0.256 1.256 28 H 0.171 0.829 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.404 0.596 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.382 0.618 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 1.876 -5.435 6.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.141 4.141 3 Si 0.584 3.416 4 C -0.205 4.205 5 C -0.056 4.056 6 N -0.150 5.150 7 C -0.035 4.035 8 C 0.277 3.723 9 O -0.386 6.386 10 N -0.369 5.369 11 C 0.020 3.980 12 H 0.138 0.862 13 C -0.174 4.174 14 C 0.020 3.980 15 H 0.106 0.894 16 O -0.364 6.364 17 C -0.222 4.222 18 C 0.004 3.996 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.165 4.165 22 C -0.084 4.084 23 C -0.091 4.091 24 H 0.224 0.776 25 H 0.127 0.873 26 H -0.179 1.179 27 H -0.180 1.180 28 H 0.188 0.812 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.238 0.762 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.230 0.770 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.097 2.596 -4.263 5.874 hybrid contribution 0.192 -1.030 -0.407 1.124 sum 3.289 1.567 -4.669 5.922 Atomic orbital electron populations 1.86489 1.17437 1.81832 1.48957 1.24332 0.84777 1.08753 0.96219 0.95250 0.80657 0.77856 0.87842 1.20646 1.09655 0.92402 0.97819 1.21509 1.01230 0.93779 0.89108 1.43199 1.53831 1.04644 1.13289 1.21596 0.94559 1.06041 0.81336 1.21048 0.90822 0.76927 0.83538 1.90812 1.19850 1.47111 1.80855 1.45881 1.10733 1.73516 1.06795 1.22243 0.93108 0.96705 0.85937 0.86228 1.23464 1.02717 0.98250 0.93003 1.23073 0.95876 0.95739 0.83338 0.89411 1.86511 1.52804 1.62318 1.34748 1.24204 1.03621 0.98014 0.96357 1.18161 1.01368 0.85849 0.94184 1.19953 1.05314 0.89297 1.00288 1.20823 0.98373 0.97941 0.94454 1.20671 1.02424 0.96944 0.96439 1.20309 0.97897 0.90957 0.99270 1.18946 1.03161 0.92830 0.94150 0.77557 0.87254 1.17878 1.18037 0.81198 0.85836 0.86457 0.76152 0.89761 0.88521 0.76974 0.88799 0.90553 0.86775 0.85741 0.85934 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.30 12.88 -35.23 -0.45 -1.75 16 2 C -0.03 -0.04 3.06 36.01 0.11 0.07 16 3 Si 0.68 -0.32 30.76 -169.99 -5.23 -5.54 16 4 C -0.20 -0.49 5.58 -102.71 -0.57 -1.06 16 5 C 0.07 0.04 9.89 -16.73 -0.17 -0.12 16 6 N -0.47 -0.54 2.27 -115.71 -0.26 -0.80 16 7 C 0.09 -0.24 6.48 -5.19 -0.03 -0.27 16 8 C 0.49 -0.17 7.90 -10.99 -0.09 -0.26 16 9 O -0.51 -2.34 16.02 5.55 0.09 -2.25 16 10 N -0.72 2.02 5.35 -53.01 -0.28 1.73 16 11 C 0.13 -0.23 4.24 -67.11 -0.28 -0.51 16 12 H 0.12 -0.03 7.46 -51.93 -0.39 -0.42 16 13 C -0.14 0.35 7.66 -25.92 -0.20 0.15 16 14 C 0.08 -0.16 5.21 -25.92 -0.14 -0.29 16 15 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 16 O -0.56 0.43 13.67 -35.23 -0.48 -0.06 16 17 C -0.18 0.33 7.71 -25.91 -0.20 0.13 16 18 C 0.11 0.38 6.80 -83.99 -0.57 -0.19 16 19 C -0.13 -0.35 10.00 -39.43 -0.39 -0.74 16 20 C -0.10 -0.23 10.01 -39.54 -0.40 -0.63 16 21 C -0.15 -0.42 9.97 -39.95 -0.40 -0.82 16 22 C -0.07 -0.26 10.05 -39.65 -0.40 -0.66 16 23 C -0.09 -0.38 6.35 -105.14 -0.67 -1.05 16 24 H 0.38 -0.42 8.70 45.56 0.40 -0.02 16 25 H 0.11 0.23 7.96 -51.93 -0.41 -0.18 16 26 H -0.25 -0.71 7.11 56.52 0.40 -0.31 16 27 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 28 H 0.17 -0.51 6.35 -52.48 -0.33 -0.84 16 29 H 0.12 -0.74 8.12 -51.93 -0.42 -1.16 16 30 H 0.12 -0.53 8.14 -51.93 -0.42 -0.95 16 31 H 0.40 -2.27 8.73 -40.82 -0.36 -2.63 16 32 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 33 H 0.10 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.38 -1.71 9.12 45.56 0.42 -1.30 16 35 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 36 H 0.08 -0.09 8.14 -51.94 -0.42 -0.51 16 37 H 0.11 0.09 8.06 -52.49 -0.42 -0.33 16 38 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 39 H 0.12 0.11 8.06 -52.49 -0.42 -0.31 16 40 H 0.12 0.38 8.06 -52.49 -0.42 -0.05 16 LS Contribution 343.57 15.07 5.18 5.18 Total: 0.00 -11.40 343.57 -10.36 -21.76 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: -4.52 Total: -12.01 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.39 Total: -6.26 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -0.55 Total: 0.93 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: -0.85 Total: -4.05 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -5.23 Total: -5.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -11.40 -10.36 -21.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_9818708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.347 kcal (2) G-P(sol) polarization free energy of solvation -11.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds