Wall clock time and date at job start Sun Mar 7 2021 22:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46951 * 239.99882 * 2 1 3 5 5 C 1.34234 * 126.49984 * 105.02446 * 4 2 1 6 6 N 1.36833 * 109.93968 * 179.97438 * 5 4 2 7 7 C 1.46499 * 125.06343 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47361 * 265.02803 * 7 6 5 9 9 O 1.21286 * 119.99957 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00279 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00023 * 179.97438 * 10 8 7 12 12 H 1.08993 * 112.85151 * 23.79704 * 11 10 8 13 13 C 1.53782 * 113.61621 * 154.99923 * 11 10 8 14 14 C 1.53777 * 87.08222 * 139.97830 * 13 11 10 15 15 H 1.09000 * 113.61466 * 89.20183 * 14 13 11 16 16 O 1.42901 * 113.61269 * 220.01540 * 14 13 11 17 17 C 1.53781 * 87.08454 * 334.56759 * 14 13 11 18 18 C 1.37685 * 109.87352 * 0.02562 * 6 5 4 19 19 C 1.39088 * 133.51510 * 179.97438 * 18 6 5 20 20 C 1.37785 * 119.78038 * 180.02562 * 19 18 6 21 21 C 1.38798 * 120.66545 * 0.02562 * 20 19 18 22 22 C 1.36656 * 120.52612 * 359.97438 * 21 20 19 23 23 C 1.39593 * 119.76666 * 0.02562 * 22 21 20 24 24 H 0.96697 * 114.00299 * 60.00321 * 1 2 3 25 25 H 1.08998 * 109.47267 * 119.99891 * 2 1 3 26 26 H 1.48498 * 110.00083 * 59.99795 * 3 2 1 27 27 H 1.48504 * 110.00113 * 181.32425 * 3 2 1 28 28 H 1.08005 * 125.03160 * 359.69843 * 5 4 2 29 29 H 1.09003 * 109.46996 * 25.02642 * 7 6 5 30 30 H 1.09000 * 109.46996 * 145.02583 * 7 6 5 31 31 H 0.96998 * 120.00039 * 359.97438 * 10 8 7 32 32 H 1.09004 * 113.61152 * 254.52922 * 13 11 10 33 33 H 1.09001 * 113.61264 * 25.34458 * 13 11 10 34 34 H 0.96700 * 113.99791 * 179.97438 * 16 14 13 35 35 H 1.08999 * 113.61153 * 270.88674 * 17 14 13 36 36 H 1.08988 * 113.61541 * 139.97824 * 17 14 13 37 37 H 1.07996 * 120.10921 * 0.02562 * 19 18 6 38 38 H 1.07995 * 119.67135 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.73109 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.11680 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4612 -0.1377 -2.3228 6 7 2.8035 -1.0991 -3.2343 7 6 3.4093 -0.8406 -4.5429 8 6 2.3303 -0.7830 -5.5934 9 8 1.1696 -0.9428 -5.2799 10 7 2.6552 -0.5551 -6.8813 11 6 1.6063 -0.4998 -7.9026 12 1 0.6293 -0.2444 -7.4925 13 6 1.9923 0.3311 -9.1378 14 6 1.2978 -0.7490 -9.9839 15 1 0.2361 -0.5619 -10.1448 16 8 1.9944 -1.0666 -11.1905 17 6 1.5853 -1.7255 -8.8312 18 6 2.4939 -2.3457 -2.7384 19 6 2.6285 -3.6362 -3.2394 20 6 2.2136 -4.7106 -2.4832 21 6 1.6611 -4.5191 -1.2244 22 6 1.5195 -3.2599 -0.7128 23 6 1.9332 -2.1569 -1.4618 24 1 -0.3933 0.4416 -0.7650 25 1 1.7924 -0.5138 0.8900 26 1 1.5615 2.4679 1.2084 27 1 3.5347 1.7703 -0.0322 28 1 2.5933 0.9250 -2.4634 29 1 3.9409 0.1107 -4.5156 30 1 4.1088 -1.6410 -4.7839 31 1 3.5835 -0.4277 -7.1321 32 1 1.5006 1.3030 -9.1812 33 1 3.0678 0.3930 -9.3036 34 1 1.5626 -1.7457 -11.7267 35 1 2.5495 -2.2270 -8.9141 36 1 0.7652 -2.4138 -8.6272 37 1 3.0568 -3.7955 -4.2179 38 1 2.3193 -5.7119 -2.8737 39 1 1.3405 -5.3721 -0.6447 40 1 1.0884 -3.1184 0.2673 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_9818708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:38 Heat of formation + Delta-G solvation = -18.761239 kcal Electronic energy + Delta-G solvation = -24433.066429 eV Core-core repulsion = 20795.037685 eV Total energy + Delta-G solvation = -3638.028744 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.54181 -41.12473 -39.62078 -38.10531 -37.61039 -36.36437 -34.33178 -33.73874 -31.43544 -30.24503 -29.01414 -26.78795 -26.12343 -24.81647 -23.69423 -22.66682 -21.71127 -20.98248 -20.60413 -18.84427 -18.51741 -18.35997 -17.71005 -17.27264 -16.72922 -16.48725 -16.39168 -16.16298 -15.93100 -15.43079 -15.33816 -14.99072 -14.74709 -14.63875 -14.41087 -14.06994 -13.72700 -13.65544 -13.51181 -13.21499 -12.73896 -12.69939 -12.58585 -12.30721 -12.23482 -12.12281 -11.81988 -11.73639 -11.15572 -10.82586 -10.55538 -10.30456 -10.12937 -9.17113 -8.63807 -4.99577 0.12770 0.61671 1.36887 1.40584 1.44626 1.68674 1.70849 2.00419 2.20375 2.92707 3.31870 3.42489 3.55641 3.60906 3.67409 3.69787 3.76839 3.80529 3.88239 3.95441 4.04289 4.15771 4.20004 4.28727 4.46957 4.47547 4.54972 4.70160 4.70448 4.73835 4.77243 4.87096 4.92909 4.95003 5.09603 5.11734 5.46768 5.48772 5.64157 5.71794 5.74123 6.19124 6.22464 6.47497 6.82191 6.83791 7.12967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.047 4.047 3 Si 0.795 3.205 4 C -0.225 4.225 5 C 0.080 3.920 6 N -0.467 5.467 7 C 0.087 3.913 8 C 0.494 3.506 9 O -0.569 6.569 10 N -0.701 5.701 11 C 0.124 3.876 12 H 0.102 0.898 13 C -0.129 4.129 14 C 0.077 3.923 15 H 0.096 0.904 16 O -0.577 6.577 17 C -0.180 4.180 18 C 0.090 3.910 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.154 4.154 22 C -0.091 4.091 23 C -0.118 4.118 24 H 0.390 0.610 25 H 0.092 0.908 26 H -0.301 1.301 27 H -0.274 1.274 28 H 0.210 0.790 29 H 0.167 0.833 30 H 0.140 0.860 31 H 0.420 0.580 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.396 0.604 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 2.958 -7.040 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.699 3.301 4 C -0.232 4.232 5 C -0.045 4.045 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.280 3.720 9 O -0.447 6.447 10 N -0.354 5.354 11 C 0.018 3.982 12 H 0.120 0.880 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.114 0.886 16 O -0.385 6.385 17 C -0.219 4.219 18 C -0.015 4.015 19 C -0.154 4.154 20 C -0.127 4.127 21 C -0.173 4.173 22 C -0.110 4.110 23 C -0.122 4.122 24 H 0.240 0.760 25 H 0.109 0.891 26 H -0.229 1.229 27 H -0.201 1.201 28 H 0.226 0.774 29 H 0.184 0.816 30 H 0.158 0.842 31 H 0.258 0.742 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.616 3.650 -5.936 8.358 hybrid contribution -0.295 -1.413 0.064 1.445 sum 4.321 2.237 -5.872 7.626 Atomic orbital electron populations 1.86440 1.18304 1.82432 1.49991 1.24705 0.84385 1.11036 0.95477 0.93980 0.77468 0.73509 0.85158 1.20800 1.11506 0.91852 0.99080 1.22092 0.99055 0.95300 0.88101 1.43452 1.53227 1.03795 1.14444 1.21994 0.93803 1.09181 0.78762 1.21438 0.90467 0.75783 0.84340 1.90801 1.22193 1.49939 1.81749 1.45763 1.11468 1.72177 1.05966 1.22128 0.92778 0.97000 0.86250 0.88034 1.23421 1.03019 0.98204 0.92013 1.23161 0.96356 0.95759 0.82989 0.88650 1.86467 1.53657 1.63070 1.35267 1.24157 1.03206 0.97868 0.96641 1.18386 1.01759 0.87094 0.94243 1.20249 1.04995 0.89202 1.00985 1.21122 0.98284 0.99046 0.94291 1.20911 1.02346 0.96991 0.97034 1.20447 0.99177 0.91850 0.99510 1.19383 1.03758 0.93996 0.95075 0.76024 0.89090 1.22882 1.20076 0.77406 0.81596 0.84186 0.74186 0.89240 0.87970 0.75401 0.88800 0.91564 0.84983 0.83708 0.84653 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.68 12.88 -148.98 -1.92 -5.60 16 2 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.79 -1.03 30.76 68.60 2.11 1.08 16 4 C -0.23 -1.33 5.58 -18.63 -0.10 -1.43 16 5 C 0.08 0.03 9.89 83.00 0.82 0.85 16 6 N -0.47 -0.67 2.27 -519.99 -1.18 -1.85 16 7 C 0.09 -0.66 6.48 85.63 0.56 -0.10 16 8 C 0.49 -0.87 7.90 87.66 0.69 -0.17 16 9 O -0.57 -5.43 16.02 -3.05 -0.05 -5.48 16 10 N -0.70 4.88 5.35 -440.03 -2.36 2.53 16 11 C 0.12 -0.49 4.24 45.52 0.19 -0.30 16 12 H 0.10 0.03 7.46 -2.39 -0.02 0.01 16 13 C -0.13 0.78 7.66 31.12 0.24 1.01 16 14 C 0.08 -0.34 5.21 31.12 0.16 -0.18 16 15 H 0.10 -0.60 8.14 -2.39 -0.02 -0.61 16 16 O -0.58 1.24 13.67 -148.98 -2.04 -0.80 16 17 C -0.18 0.66 7.71 31.12 0.24 0.90 16 18 C 0.09 0.69 6.80 39.03 0.27 0.96 16 19 C -0.13 -0.78 10.00 22.37 0.22 -0.56 16 20 C -0.11 -0.61 10.01 22.30 0.22 -0.39 16 21 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 22 C -0.09 -0.97 10.05 22.23 0.22 -0.75 16 23 C -0.12 -1.25 6.35 -20.20 -0.13 -1.38 16 24 H 0.39 -0.40 8.70 -74.06 -0.64 -1.04 16 25 H 0.09 0.63 7.96 -2.39 -0.02 0.62 16 26 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 27 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 28 H 0.21 -1.81 6.35 -2.91 -0.02 -1.83 16 29 H 0.17 -2.67 8.12 -2.39 -0.02 -2.69 16 30 H 0.14 -1.66 8.14 -2.39 -0.02 -1.68 16 31 H 0.42 -5.71 8.73 -92.71 -0.81 -6.52 16 32 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.10 -0.71 8.12 -2.39 -0.02 -0.73 16 34 H 0.40 -3.70 9.12 -74.06 -0.68 -4.37 16 35 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16 40 H 0.12 1.16 8.06 -2.91 -0.02 1.13 16 Total: 0.00 -29.44 343.57 -2.39 -31.83 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: -1.00 Total: -19.25 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 4.04 Total: -2.47 kcal Atomic # 7 Polarization: 4.21 SS G_CDS: -3.54 Total: 0.68 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -4.00 Total: -11.87 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.11 Total: 1.08 kcal Total: -29.44 -2.39 -31.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_9818708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.069 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds