Wall clock time and date at job start Sun Mar 7 2021 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36773 * 125.79779 * 2 1 4 4 C 1.47259 * 126.94514 * 0.07123 * 3 2 1 5 5 O 1.21633 * 120.00027 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00317 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00370 * 180.02562 * 6 4 3 8 8 H 1.09001 * 112.84812 * 23.79816 * 7 6 4 9 9 C 1.53779 * 113.61908 * 154.99741 * 7 6 4 10 10 C 1.53783 * 87.08181 * 139.97818 * 9 7 6 11 11 H 1.09004 * 113.60727 * 89.20444 * 10 9 7 12 12 O 1.42897 * 113.61548 * 220.01940 * 10 9 7 13 13 C 1.53777 * 113.61484 * 252.49867 * 7 6 4 14 14 C 1.46696 * 106.11272 * 179.79840 * 3 2 1 15 15 C 1.34482 * 106.33105 * 0.39048 * 14 3 2 16 16 C 1.50693 * 125.57124 * 179.86309 * 15 14 3 17 17 O 1.42907 * 109.47661 * 299.72381 * 16 15 14 18 18 Si 1.86298 * 109.47618 * 179.72071 * 16 15 14 19 19 N 1.34653 * 125.80485 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.46807 * 269.98363 * 1 2 3 21 21 H 1.08989 * 109.47373 * 29.97889 * 1 2 3 22 22 H 1.09000 * 109.47028 * 149.98514 * 1 2 3 23 23 H 0.97002 * 119.99754 * 359.97438 * 6 4 3 24 24 H 1.08996 * 113.61861 * 254.53029 * 9 7 6 25 25 H 1.09002 * 113.61226 * 25.35140 * 9 7 6 26 26 H 0.96703 * 114.00165 * 180.02562 * 12 10 9 27 27 H 1.09003 * 113.61394 * 334.56438 * 13 7 6 28 28 H 1.09005 * 113.62046 * 105.46414 * 13 7 6 29 29 H 1.08001 * 126.83147 * 180.25445 * 14 3 2 30 30 H 1.09000 * 109.46936 * 59.72004 * 16 15 14 31 31 H 0.96697 * 114.00527 * 179.97438 * 17 16 15 32 32 H 1.48506 * 109.99834 * 298.68714 * 18 16 15 33 33 H 1.48502 * 110.00011 * 59.99978 * 18 16 15 34 34 H 0.96997 * 124.85140 * 359.96211 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 0.0015 5 8 0.6838 2.7839 0.0033 6 7 2.7848 3.5055 0.0007 7 6 2.3503 4.9045 0.0028 8 1 1.3477 5.0357 0.4100 9 6 3.3880 5.8712 0.5973 10 6 3.0044 6.8492 -0.5257 11 1 2.1813 7.5140 -0.2634 12 8 4.1206 7.5427 -1.0869 13 6 2.5698 5.6197 -1.3408 14 6 3.6882 0.6152 0.0050 15 6 3.6096 -0.7273 -0.0013 16 6 4.7819 -1.6741 -0.0023 17 8 5.5756 -1.4485 -1.1691 18 14 4.1617 -3.4308 -0.0034 19 7 2.2947 -1.0921 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5141 23 1 3.7310 3.2915 -0.0004 24 1 3.1309 6.2286 1.5944 25 1 4.4131 5.5069 0.5295 26 1 3.8856 8.1597 -1.7935 27 1 3.3714 5.1874 -1.9397 28 1 1.6521 5.7742 -1.9084 29 1 4.5890 1.2111 0.0101 30 1 5.3877 -1.5032 0.8876 31 1 6.3497 -2.0241 -1.2357 32 1 3.3613 -3.6875 1.2209 33 1 3.3343 -3.6765 -1.2118 34 1 1.9735 -2.0073 -0.0004 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_9865296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 22:03:42 Heat of formation + Delta-G solvation = -49.039370 kcal Electronic energy + Delta-G solvation = -18572.007984 eV Core-core repulsion = 15472.882322 eV Total energy + Delta-G solvation = -3099.125662 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.62469 -40.95646 -39.38392 -37.68192 -36.34935 -34.09697 -33.00932 -32.09065 -29.07660 -26.79010 -26.31774 -24.84763 -23.02609 -21.61338 -21.28333 -20.33786 -18.77166 -18.54347 -18.16041 -17.28555 -16.89490 -16.40581 -16.12880 -15.82686 -15.38829 -15.32186 -14.80748 -14.56940 -14.52503 -14.23131 -13.92094 -13.61845 -13.55133 -13.51179 -12.97664 -12.69619 -12.51804 -12.29691 -12.13897 -11.71446 -11.06436 -10.79540 -10.39916 -10.22532 -9.92419 -9.27393 -5.12725 0.53792 1.05045 1.19411 1.54673 1.78456 1.79968 2.28091 2.38752 3.32643 3.38875 3.46120 3.64417 3.66570 3.80642 3.82479 3.89886 4.02096 4.05935 4.37627 4.43723 4.49276 4.56421 4.64165 4.69662 4.73099 4.87212 4.92011 4.96449 5.05204 5.18895 5.51459 5.57199 5.71563 6.17157 6.54609 6.85746 6.88488 7.23064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.111 3.889 3 C -0.263 4.263 4 C 0.590 3.410 5 O -0.584 6.584 6 N -0.704 5.704 7 C 0.121 3.879 8 H 0.107 0.893 9 C -0.132 4.132 10 C 0.083 3.917 11 H 0.103 0.897 12 O -0.576 6.576 13 C -0.180 4.180 14 C -0.132 4.132 15 C 0.002 3.998 16 C -0.048 4.048 17 O -0.562 6.562 18 Si 0.776 3.224 19 N -0.549 5.549 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.411 0.589 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.396 0.604 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.164 0.836 30 H 0.109 0.891 31 H 0.407 0.593 32 H -0.280 1.280 33 H -0.294 1.294 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -3.667 0.976 5.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.466 6.466 6 N -0.354 5.354 7 C 0.016 3.984 8 H 0.125 0.875 9 C -0.170 4.170 10 C 0.024 3.976 11 H 0.120 0.880 12 O -0.384 6.384 13 C -0.219 4.219 14 C -0.156 4.156 15 C -0.106 4.106 16 C -0.159 4.159 17 O -0.372 6.372 18 Si 0.680 3.320 19 N -0.150 5.150 20 H 0.106 0.894 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.248 0.752 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.247 0.753 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.182 0.818 30 H 0.127 0.873 31 H 0.259 0.741 32 H -0.207 1.207 33 H -0.221 1.221 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.021 -4.035 1.312 5.208 hybrid contribution -0.233 0.324 -0.453 0.604 sum 2.788 -3.711 0.860 4.720 Atomic orbital electron populations 1.20623 0.85804 1.04587 1.04237 1.20666 0.94526 0.85483 1.00124 1.20253 0.94145 0.91875 1.20999 1.17535 0.85107 0.84764 0.74531 1.90714 1.17940 1.84907 1.53035 1.45616 1.09969 1.05134 1.74721 1.22216 0.99526 0.79215 0.97443 0.87481 1.23435 0.99915 0.94653 0.98988 1.23124 0.89289 0.91200 0.94004 0.87963 1.86469 1.34267 1.60782 1.56932 1.24160 1.02337 0.97787 0.97597 1.22009 0.95545 0.92917 1.05156 1.19821 0.83987 0.95183 1.11571 1.24156 0.92297 1.07115 0.92345 1.86450 1.43262 1.65584 1.41933 0.93511 0.85208 0.76694 0.76582 1.41825 1.05805 1.08457 1.58888 0.89426 0.89463 0.89657 0.75215 0.89095 0.88583 0.75332 0.89436 0.90916 0.81838 0.87337 0.74087 1.20660 1.22130 0.74445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 9.88 71.24 0.70 0.30 16 2 C 0.11 0.79 7.17 41.78 0.30 1.09 16 3 C -0.26 -2.32 6.29 -19.04 -0.12 -2.44 16 4 C 0.59 6.30 7.81 86.61 0.68 6.98 16 5 O -0.58 -9.62 14.41 -4.13 -0.06 -9.68 16 6 N -0.70 -3.28 5.35 -443.46 -2.37 -5.65 16 7 C 0.12 0.38 4.24 45.52 0.19 0.57 16 8 H 0.11 0.62 7.46 -2.39 -0.02 0.60 16 9 C -0.13 0.01 7.66 31.12 0.24 0.25 16 10 C 0.08 -0.03 5.21 31.12 0.16 0.13 16 11 H 0.10 -0.36 8.14 -2.38 -0.02 -0.38 16 12 O -0.58 -0.77 13.67 -148.98 -2.04 -2.80 16 13 C -0.18 -0.31 7.71 31.12 0.24 -0.07 16 14 C -0.13 -0.67 10.44 23.62 0.25 -0.42 16 15 C 0.00 0.01 6.14 40.98 0.25 0.26 16 16 C -0.05 0.16 2.97 71.23 0.21 0.38 16 17 O -0.56 1.57 12.84 -148.98 -1.91 -0.34 16 18 Si 0.78 -4.46 30.94 68.60 2.12 -2.34 16 19 N -0.55 -2.23 5.41 -171.08 -0.93 -3.16 16 20 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 21 H 0.09 0.74 6.47 -2.39 -0.02 0.72 16 22 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 23 H 0.41 0.20 7.85 -92.71 -0.73 -0.53 16 24 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.10 0.00 8.12 -2.39 -0.02 -0.02 16 26 H 0.40 -2.60 9.12 -74.06 -0.68 -3.28 16 27 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.16 0.11 7.70 -2.91 -0.02 0.09 16 30 H 0.11 -0.86 7.96 -2.39 -0.02 -0.88 16 31 H 0.41 -5.54 8.74 -74.06 -0.65 -6.18 16 32 H -0.28 0.32 7.11 99.48 0.71 1.02 16 33 H -0.29 -0.49 7.11 99.48 0.71 0.21 16 34 H 0.42 0.15 6.70 -92.71 -0.62 -0.47 16 Total: 0.00 -22.10 291.34 -3.55 -25.65 By element: Atomic # 1 Polarization: -7.24 SS G_CDS: -1.47 Total: -8.71 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 3.10 Total: 7.03 kcal Atomic # 7 Polarization: -5.51 SS G_CDS: -3.30 Total: -8.81 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -4.01 Total: -12.82 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.12 Total: -2.34 kcal Total: -22.10 -3.55 -25.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_9865296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.394 kcal (2) G-P(sol) polarization free energy of solvation -22.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds