Wall clock time and date at job start Sun Mar 7 2021 23:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37652 * 125.67831 * 2 1 4 4 C 1.46686 * 126.23428 * 0.24473 * 3 2 1 5 5 O 1.21692 * 120.00118 * 160.86305 * 4 3 2 6 6 N 1.34774 * 119.99720 * 340.86582 * 4 3 2 7 7 C 1.46500 * 119.99864 * 187.93805 * 6 4 3 8 8 C 1.50697 * 109.46937 * 90.00279 * 7 6 4 9 9 C 1.38177 * 120.01305 * 105.00048 * 8 7 6 10 10 C 1.38272 * 120.02591 * 180.25341 * 9 8 7 11 11 C 1.38223 * 120.05024 * 359.72730 * 10 9 8 12 12 C 1.38221 * 120.02493 * 359.97438 * 11 10 9 13 13 C 1.38434 * 119.97618 * 0.27824 * 12 11 10 14 14 F 1.35094 * 120.02749 * 179.70328 * 13 12 11 15 15 C 1.46497 * 120.00266 * 7.94465 * 6 4 3 16 16 C 1.50138 * 79.17497 * 66.52519 * 1 2 3 17 17 C 1.52996 * 75.02883 * 130.03292 * 16 1 2 18 18 C 1.53002 * 109.47238 * 10.20478 * 17 16 1 19 19 C 1.53008 * 109.46926 * 59.99936 * 18 17 16 20 20 C 1.52999 * 109.47434 * 79.70594 * 15 6 4 21 21 C 1.37872 * 107.53619 * 180.26470 * 3 2 1 22 22 C 1.39837 * 107.07962 * 359.97438 * 21 3 2 23 23 C 1.35444 * 107.86617 * 0.02562 * 22 21 3 24 24 C 1.50706 * 125.56022 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.46997 * 298.44248 * 24 23 22 26 26 Si 1.86307 * 109.46953 * 178.44539 * 24 23 22 27 27 H 1.34810 * 57.51705 * 239.20787 * 18 17 16 28 28 H 1.48497 * 109.46967 * 299.99598 * 26 24 23 29 29 H 1.48497 * 109.46953 * 180.02562 * 26 24 23 30 30 H 0.90907 * 133.96963 * 357.53993 * 15 6 4 31 31 H 1.09000 * 109.46734 * 276.12705 * 1 2 3 32 32 H 0.93255 * 58.61542 * 310.93510 * 18 17 16 33 33 H 1.09004 * 109.47146 * 210.00013 * 7 6 4 34 34 H 1.08994 * 109.47295 * 330.00373 * 7 6 4 35 35 H 1.08000 * 119.98872 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.97251 * 179.72825 * 10 9 8 37 37 H 1.07999 * 119.98541 * 180.29416 * 11 10 9 38 38 H 1.07995 * 120.00998 * 180.02562 * 12 11 10 39 39 H 1.08995 * 109.47411 * 199.70990 * 15 6 4 40 40 H 0.85106 * 64.56525 * 285.62982 * 2 1 3 41 41 H 1.09000 * 169.26841 * 13.77745 * 16 1 2 42 42 H 1.08991 * 109.47165 * 250.20362 * 17 16 1 43 43 H 1.09005 * 109.46634 * 130.20170 * 17 16 1 44 44 H 0.89667 * 73.11757 * 193.13211 * 32 18 17 45 45 H 1.09001 * 109.47032 * 179.97438 * 18 17 16 46 46 H 1.08995 * 109.47250 * 60.00195 * 19 18 17 47 47 H 1.09000 * 109.46635 * 179.97438 * 19 18 17 48 48 H 1.09001 * 109.46826 * 60.00288 * 20 15 6 49 49 H 0.83075 * 110.30847 * 64.93646 * 31 1 2 50 50 H 1.07999 * 126.45857 * 180.02562 * 21 3 2 51 51 H 1.08005 * 126.06540 * 179.97438 * 22 21 3 52 52 H 1.08990 * 109.47508 * 58.44621 * 24 23 22 53 53 H 0.96701 * 114.00455 * 300.00056 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8125 2.5125 0.0051 5 8 2.5712 3.3992 0.3501 6 7 0.5537 2.8116 -0.3724 7 6 0.1507 4.2107 -0.5351 8 6 0.4108 4.6466 -1.9540 9 6 -0.6420 4.7875 -2.8378 10 6 -0.4030 5.1824 -4.1412 11 6 0.8883 5.4421 -4.5600 12 6 1.9424 5.3078 -3.6760 13 6 1.7050 4.9074 -2.3723 14 9 2.7350 4.7700 -1.5091 15 6 -0.4116 1.7378 -0.6200 16 6 0.2820 0.5874 -1.3526 17 6 -0.7260 -0.5341 -1.6111 18 6 -1.2802 -1.0393 -0.2774 19 6 -1.9738 0.1111 0.4552 20 6 -0.9656 1.2326 0.7137 21 6 3.5780 0.6889 -0.0061 22 6 3.5521 -0.7093 -0.0091 23 6 2.2555 -1.1008 -0.0056 24 6 1.7709 -2.5278 -0.0077 25 8 2.2211 -3.1820 -1.1957 26 14 -0.0912 -2.5514 0.0466 27 1 -0.6303 -1.8434 -1.1426 28 1 -0.5591 -1.8716 1.2812 29 1 -0.5687 -3.9575 0.0451 30 1 -0.3633 0.8301 -0.6059 31 1 -0.3633 0.1097 1.0218 32 1 -0.3633 -0.9396 -0.4159 33 1 -0.9118 4.3109 -0.3132 34 1 0.7251 4.8361 0.1482 35 1 -1.6514 4.5848 -2.5116 36 1 -1.2261 5.2881 -4.8324 37 1 1.0733 5.7551 -5.5770 38 1 2.9512 5.5111 -4.0035 39 1 -1.2291 2.1181 -1.2323 40 1 1.0995 0.2071 -0.7402 41 1 0.6767 0.9474 -2.3027 42 1 -0.2320 -1.3535 -2.1330 43 1 -1.5436 -0.1537 -2.2235 44 1 -0.4626 -1.4196 0.3350 45 1 -1.9986 -1.8380 -0.4616 46 1 -2.7913 0.4914 -0.1572 47 1 -2.3689 -0.2489 1.4051 48 1 -1.4598 2.0520 1.2356 49 1 -0.1482 0.8522 1.3262 50 1 4.4584 1.3145 -0.0073 51 1 4.4132 -1.3612 -0.0144 52 1 2.1663 -3.0472 0.8652 53 1 1.9066 -2.7727 -2.0134 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7556820_10803936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 23:24:28 Heat of formation + Delta-G solvation = 1506.430742 kcal Electronic energy + Delta-G solvation = -39986.470187 eV Core-core repulsion = 35499.774591 eV Total energy + Delta-G solvation = -4486.695596 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 374.192 amu Computer time = 5.85 seconds Orbital eigenvalues (eV) -55.19017 -49.78474 -43.59889 -41.23149 -39.76536 -38.95359 -37.73814 -35.54327 -35.43034 -33.05109 -32.26842 -31.43042 -31.25190 -28.03118 -26.52328 -26.26074 -25.41890 -24.72134 -23.70251 -23.30013 -22.16047 -21.85173 -20.64468 -20.09187 -19.71050 -19.00382 -18.44738 -18.34070 -17.84063 -17.43152 -17.25034 -17.05949 -16.42960 -16.29839 -16.26325 -16.07707 -15.85183 -15.63509 -15.30730 -15.10585 -14.88417 -14.55536 -14.36796 -14.15436 -13.99945 -13.89552 -13.85926 -13.68779 -13.27228 -13.21159 -12.95913 -12.77989 -12.59394 -12.47827 -12.05431 -12.00123 -11.78150 -11.47497 -11.33217 -10.72846 -10.42995 -10.06474 -9.97160 -9.86195 -9.61092 -9.41630 -8.95082 -8.63510 -7.94966 -7.28051 -0.27085 0.11436 0.24835 0.79978 1.01413 1.16265 1.33309 1.58399 1.77132 2.10910 2.20037 2.32914 2.59056 2.71831 3.00665 3.04151 3.23637 3.37573 3.40215 3.52712 3.58602 3.65620 3.71055 3.75987 3.83353 3.98039 4.00531 4.07431 4.09940 4.12002 4.25237 4.28554 4.33426 4.38702 4.43890 4.47956 4.52811 4.58683 4.63062 4.72212 4.79971 4.88738 4.92468 4.93765 4.96384 5.01856 5.04460 5.12951 5.17756 5.21701 5.28065 5.38116 5.45955 5.47162 5.57385 5.69293 5.96528 6.12737 6.62758 6.71061 6.96391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 N -0.315 5.315 3 C -0.106 4.106 4 C 0.587 3.413 5 O -0.549 6.549 6 N -0.591 5.591 7 C 0.150 3.850 8 C -0.154 4.154 9 C -0.071 4.071 10 C -0.130 4.130 11 C -0.089 4.089 12 C -0.178 4.178 13 C 0.075 3.925 14 F -0.146 7.146 15 C 0.058 3.942 16 C -0.377 4.377 17 C -0.182 4.182 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.100 4.100 21 C -0.118 4.118 22 C -0.184 4.184 23 C -0.038 4.038 24 C -0.040 4.040 25 O -0.548 6.548 26 Si 0.474 3.526 27 H 0.211 0.789 28 H -0.267 1.267 29 H -0.286 1.286 30 H 0.413 0.587 31 H 0.187 0.813 32 H 0.246 0.754 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.364 0.636 41 H 0.060 0.940 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.016 0.984 45 H 0.108 0.892 46 H 0.138 0.862 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.148 0.852 52 H 0.088 0.912 53 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 0.590 -7.704 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.740 4.740 2 N 0.006 4.994 3 C -0.207 4.207 4 C 0.377 3.623 5 O -0.426 6.426 6 N -0.322 5.322 7 C 0.029 3.971 8 C -0.156 4.156 9 C -0.089 4.089 10 C -0.147 4.147 11 C -0.107 4.107 12 C -0.197 4.197 13 C 0.055 3.945 14 F -0.124 7.124 15 C -0.045 4.045 16 C -0.408 4.408 17 C -0.217 4.217 18 C -0.169 4.169 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.207 4.207 23 C -0.145 4.145 24 C -0.148 4.148 25 O -0.355 6.355 26 Si 0.338 3.662 27 H 0.256 0.744 28 H -0.202 1.202 29 H -0.213 1.213 30 H 0.419 0.581 31 H 0.202 0.798 32 H 0.256 0.744 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.334 0.666 41 H 0.077 0.923 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.030 0.970 45 H 0.124 0.876 46 H 0.156 0.844 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.160 0.840 51 H 0.165 0.835 52 H 0.106 0.894 53 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.174 0.571 -6.727 15.700 hybrid contribution 2.611 -0.231 1.318 2.934 sum -11.563 0.341 -5.409 12.770 Atomic orbital electron populations 1.43502 0.71603 1.35925 1.22945 1.50393 1.09850 1.03137 1.36006 1.20865 0.91742 0.88356 1.19718 1.17097 0.82307 0.86147 0.76711 1.90869 1.55329 1.48209 1.48243 1.47866 1.10024 1.06688 1.67594 1.20534 1.03622 0.81047 0.91914 1.20422 0.91945 1.04702 0.98528 1.21386 0.99073 0.96136 0.92300 1.21646 0.97387 0.98983 0.96734 1.21409 0.92243 0.96970 1.00074 1.21401 1.01875 1.04066 0.92395 1.18274 0.85256 1.02284 0.88660 1.91615 1.58136 1.93300 1.69368 1.23447 0.94513 0.88437 0.98092 1.27122 1.13431 0.93440 1.06764 1.23663 1.02272 0.97943 0.97776 1.19341 0.96963 1.03582 0.97058 1.22201 0.97869 0.91650 1.03079 1.21842 0.98485 0.97709 0.95559 1.21763 0.95683 0.95401 1.01442 1.21139 0.97040 0.94284 1.08193 1.21922 0.91957 0.92023 1.08550 1.24371 1.13603 0.86154 0.90663 1.86493 1.77544 1.55746 1.15699 0.96199 0.77831 0.87156 1.05001 0.74446 1.20169 1.21346 0.58096 0.79836 0.74383 0.84259 0.90969 0.80990 0.82092 0.83081 0.85318 0.83919 0.66593 0.92302 0.83383 0.83569 0.97008 0.87567 0.84408 0.88992 0.90844 0.90922 0.84000 0.83454 0.89388 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 3.31 0.52 -32.59 -0.02 3.29 16 2 N -0.32 -0.98 1.56 ******* -8.14 -9.13 16 3 C -0.11 -1.01 5.64 40.35 0.23 -0.78 16 4 C 0.59 6.26 6.91 86.45 0.60 6.86 16 5 O -0.55 -10.48 13.65 -4.32 -0.06 -10.54 16 6 N -0.59 -0.36 2.40 ******* -3.21 -3.57 16 7 C 0.15 -0.14 5.36 85.63 0.46 0.32 16 8 C -0.15 -0.03 5.47 -19.82 -0.11 -0.14 16 9 C -0.07 0.50 9.67 22.26 0.22 0.72 16 10 C -0.13 0.87 10.04 22.27 0.22 1.09 16 11 C -0.09 0.23 10.04 22.26 0.22 0.46 16 12 C -0.18 -0.67 10.03 22.31 0.22 -0.45 16 13 C 0.07 0.56 7.20 22.38 0.16 0.72 16 14 F -0.15 -2.32 13.41 44.97 0.60 -1.72 16 15 C 0.06 -0.48 2.47 24.65 0.06 -0.42 16 16 C -0.38 2.59 4.00 -8.56 -0.03 2.55 16 17 C -0.18 2.94 4.68 6.21 0.03 2.97 16 18 C -0.14 1.72 1.85 -5.05 -0.01 1.71 16 19 C -0.11 1.61 5.31 26.02 0.14 1.75 16 20 C -0.10 0.88 4.93 -2.50 -0.01 0.87 16 21 C -0.12 -1.40 10.71 22.57 0.24 -1.16 16 22 C -0.18 -1.72 10.70 22.01 0.24 -1.49 16 23 C -0.04 -0.23 6.05 41.34 0.25 0.02 16 24 C -0.04 -0.17 2.98 71.24 0.21 0.04 16 25 O -0.55 -1.61 12.88 -148.98 -1.92 -3.53 16 26 Si 0.47 -0.78 18.80 68.60 1.29 0.51 16 27 H 0.21 -3.03 0.89 -61.98 -0.06 -3.08 16 28 H -0.27 -0.68 5.58 99.48 0.56 -0.13 16 29 H -0.29 -1.94 7.11 99.48 0.71 -1.23 16 30 H 0.41 -3.93 0.00 0.00 0.00 -3.93 16 31 H 0.19 -0.64 1.94 -107.50 -0.21 -0.85 16 32 H 0.25 -2.24 0.00 0.00 0.00 -2.24 16 33 H 0.14 -1.48 7.88 -2.38 -0.02 -1.50 16 34 H 0.07 0.41 7.27 -2.39 -0.02 0.39 16 35 H 0.17 -2.67 8.00 -2.91 -0.02 -2.69 16 36 H 0.16 -2.03 8.06 -2.91 -0.02 -2.06 16 37 H 0.15 -1.07 8.06 -2.91 -0.02 -1.09 16 38 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 39 H 0.14 -2.37 8.00 -2.39 -0.02 -2.39 16 40 H 0.36 -0.39 0.28 -318.49 -0.09 -0.48 16 41 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.15 -3.00 6.21 -2.39 -0.01 -3.01 16 43 H 0.15 -3.51 8.14 -2.38 -0.02 -3.53 16 44 H 0.02 -0.08 0.00 0.00 0.00 -0.08 16 45 H 0.11 -1.84 6.31 -2.39 -0.02 -1.85 16 46 H 0.14 -3.10 8.14 -2.39 -0.02 -3.12 16 47 H 0.09 -1.21 8.14 -2.39 -0.02 -1.23 16 48 H 0.07 -0.81 8.14 -2.39 -0.02 -0.83 16 49 H 0.07 -0.10 4.79 -51.48 -0.25 -0.34 16 50 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 51 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 52 H 0.09 0.72 7.96 -2.39 -0.02 0.70 16 53 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 Total: 0.00 -35.52 349.18 -8.45 -43.97 By element: Atomic # 1 Polarization: -34.60 SS G_CDS: -0.32 Total: -34.92 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 3.32 Total: 18.93 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -11.36 Total: -12.70 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.98 Total: -14.07 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.60 Total: -1.72 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 1.29 Total: 0.51 kcal Total: -35.52 -8.45 -43.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7556820_10803936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1550.399 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1514.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 1506.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds