Wall clock time and date at job start Mon Mar 8 2021 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99565 * 2 1 4 4 C 1.38670 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.38681 * 119.99691 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99886 * 180.02562 * 6 5 4 8 8 C 1.42905 * 117.00016 * 0.02562 * 7 6 5 9 9 C 1.50700 * 109.47021 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99684 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99976 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99835 * 180.02562 * 11 9 8 13 13 Si 1.86295 * 109.47563 * 94.99953 * 12 11 9 14 14 C 1.86301 * 109.47165 * 299.99992 * 13 12 11 15 15 C 1.86302 * 109.46881 * 59.99742 * 13 12 11 16 16 C 1.86802 * 109.47335 * 179.97438 * 13 12 11 17 17 C 1.38235 * 119.99959 * 269.72675 * 16 13 12 18 18 C 1.38233 * 119.99559 * 179.76434 * 17 16 13 19 19 C 1.38242 * 120.00170 * 0.50951 * 18 17 16 20 20 C 1.38233 * 119.99774 * 359.74858 * 19 18 17 21 21 C 1.38236 * 119.99436 * 90.00317 * 16 13 12 22 22 C 1.38712 * 120.00083 * 0.02562 * 6 5 4 23 23 C 1.50701 * 119.99957 * 179.97438 * 22 6 5 24 24 O 1.42895 * 109.47079 * 75.00898 * 23 22 6 25 25 Si 1.86301 * 109.47149 * 195.00393 * 23 22 6 26 26 H 1.48506 * 109.47302 * 59.99966 * 25 23 22 27 27 H 1.48503 * 109.47334 * 300.00099 * 25 23 22 28 28 H 1.48500 * 109.47376 * 180.02562 * 25 23 22 29 29 C 1.38110 * 119.99936 * 0.24058 * 22 6 5 30 30 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46818 * 299.99390 * 1 2 3 32 32 H 1.08993 * 109.47435 * 59.99660 * 1 2 3 33 33 H 1.07996 * 120.00591 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.00545 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47003 * 300.00171 * 8 7 6 36 36 H 1.09004 * 109.46705 * 60.00512 * 8 7 6 37 37 H 0.96998 * 119.99988 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.46862 * 214.99758 * 12 11 9 39 39 H 1.09006 * 109.47212 * 334.99465 * 12 11 9 40 40 H 1.09003 * 109.46995 * 59.99654 * 14 13 12 41 41 H 1.09000 * 109.47013 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47069 * 299.99787 * 14 13 12 43 43 H 1.08996 * 109.47030 * 60.00372 * 15 13 12 44 44 H 1.09007 * 109.47353 * 180.02562 * 15 13 12 45 45 H 1.09007 * 109.47489 * 299.99881 * 15 13 12 46 46 H 1.08001 * 119.99843 * 0.02562 * 17 16 13 47 47 H 1.07997 * 120.00003 * 180.23048 * 18 17 16 48 48 H 1.07998 * 119.99687 * 179.72120 * 19 18 17 49 49 H 1.07994 * 119.99975 * 179.97438 * 20 19 18 50 50 H 1.08000 * 120.00430 * 0.02562 * 21 16 13 51 51 H 1.09001 * 109.47380 * 315.00295 * 23 22 6 52 52 H 0.96708 * 113.99763 * 299.99687 * 24 23 22 53 53 H 1.08008 * 119.99731 * 179.72155 * 29 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3746 0.0005 5 6 1.9180 3.6057 0.0011 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8900 0.0016 8 6 3.0802 6.0461 0.0038 9 6 3.9343 7.2876 0.0053 10 8 5.1433 7.1918 0.0041 11 7 3.3546 8.5044 0.0070 12 6 4.1850 9.7113 0.0079 13 14 4.4100 10.3117 -1.7412 14 6 5.2429 8.9858 -2.7506 15 6 2.7462 10.7032 -2.4823 16 6 5.4682 11.8511 -1.7399 17 6 4.8765 13.0964 -1.6397 18 6 5.6600 14.2353 -1.6338 19 6 7.0343 14.1294 -1.7388 20 6 7.6255 12.8844 -1.8443 21 6 6.8425 11.7451 -1.8449 22 6 4.0585 2.5150 -0.0011 23 6 5.5634 2.5940 -0.0022 24 8 6.0219 2.9658 1.2991 25 14 6.2721 0.9327 -0.4590 26 1 5.7957 0.5460 -1.8113 27 1 5.8305 -0.0829 0.5304 28 1 7.7551 1.0103 -0.4595 29 6 3.4315 1.2844 -0.0072 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2125 2.3181 0.0005 34 1 1.3298 4.5114 0.0011 35 1 2.4502 6.0391 -0.8856 36 1 2.4517 6.0368 0.8944 37 1 2.3877 8.5809 0.0076 38 1 3.6976 10.4871 0.5985 39 1 5.1585 9.4823 0.4416 40 1 4.6251 8.0877 -2.7513 41 1 5.3742 9.3369 -3.7741 42 1 6.2164 8.7567 -2.3171 43 1 2.2589 11.4790 -1.8917 44 1 2.8777 11.0541 -3.5059 45 1 2.1283 9.8051 -2.4831 46 1 3.8025 13.1793 -1.5617 47 1 5.1981 15.2080 -1.5518 48 1 7.6460 15.0195 -1.7387 49 1 8.6991 12.8016 -1.9267 50 1 7.3043 10.7724 -1.9281 51 1 5.8876 3.3394 -0.7285 52 1 5.6914 3.8225 1.6026 53 1 4.0199 0.3787 -0.0130 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_8803168_4974302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:31:36 Heat of formation + Delta-G solvation = -122.400902 kcal Electronic energy + Delta-G solvation = -33211.149701 eV Core-core repulsion = 28751.400042 eV Total energy + Delta-G solvation = -4459.749659 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 389.166 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.78668 -40.73706 -39.77615 -39.64810 -38.10442 -36.92695 -35.54937 -32.82400 -31.77442 -31.58026 -31.18673 -29.90284 -29.02142 -28.33839 -28.02643 -26.60370 -26.48826 -23.62697 -23.24011 -22.95392 -22.39940 -21.52424 -19.52947 -18.79877 -18.65692 -18.07256 -17.98432 -17.48989 -17.37545 -16.71124 -16.62341 -16.26338 -15.94439 -15.76061 -15.62405 -15.59905 -15.52654 -15.24435 -14.73618 -14.35999 -14.27785 -14.24863 -14.09280 -14.05098 -13.87214 -13.57896 -13.54811 -13.51378 -13.40590 -13.16228 -13.02309 -12.94328 -12.84065 -12.47848 -12.28231 -12.26590 -11.91657 -11.85686 -11.82821 -11.42476 -11.22746 -11.09888 -10.98109 -10.81987 -10.77777 -10.09852 -9.92637 -9.77160 -9.35201 -8.81204 0.06220 0.34004 0.36025 0.55020 1.15360 1.43481 1.45979 1.48770 1.55109 1.79396 1.90684 1.91927 2.03737 2.34225 2.54634 2.55212 2.75454 2.99252 3.53189 3.63625 3.78261 3.89221 4.03523 4.09936 4.10433 4.15953 4.17103 4.19890 4.23819 4.28782 4.35127 4.42084 4.44178 4.46829 4.61028 4.69920 4.71408 4.74816 4.76662 4.78331 4.90172 4.93818 4.99223 5.06590 5.07969 5.13139 5.19727 5.20648 5.40141 5.42867 5.53578 5.58568 5.61400 5.65804 5.71479 6.17485 6.19952 6.42613 6.56681 6.58534 7.28239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.088 3.912 4 C -0.160 4.160 5 C -0.157 4.157 6 C 0.097 3.903 7 O -0.311 6.311 8 C 0.032 3.968 9 C 0.501 3.499 10 O -0.562 6.562 11 N -0.693 5.693 12 C -0.189 4.189 13 Si 1.125 2.875 14 C -0.464 4.464 15 C -0.444 4.444 16 C -0.388 4.388 17 C -0.096 4.096 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.152 4.152 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.087 4.087 24 O -0.550 6.550 25 Si 1.033 2.967 26 H -0.239 1.239 27 H -0.262 1.262 28 H -0.271 1.271 29 C -0.138 4.138 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.424 0.576 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.148 0.852 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.079 0.921 52 H 0.375 0.625 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 4.340 -1.149 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.043 3.957 4 C -0.179 4.179 5 C -0.176 4.176 6 C 0.052 3.948 7 O -0.225 6.225 8 C -0.046 4.046 9 C 0.287 3.713 10 O -0.440 6.440 11 N -0.347 5.347 12 C -0.359 4.359 13 Si 1.309 2.691 14 C -0.569 4.569 15 C -0.554 4.554 16 C -0.429 4.429 17 C -0.114 4.114 18 C -0.165 4.165 19 C -0.144 4.144 20 C -0.170 4.170 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.195 4.195 24 O -0.356 6.356 25 Si 0.854 3.146 26 H -0.162 1.162 27 H -0.186 1.186 28 H -0.196 1.196 29 C -0.156 4.156 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.189 0.811 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.262 0.738 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.166 0.834 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.141 0.859 50 H 0.138 0.862 51 H 0.097 0.903 52 H 0.224 0.776 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.494 2.817 -1.378 9.999 hybrid contribution -0.398 1.317 0.252 1.399 sum -9.892 4.134 -1.126 10.780 Atomic orbital electron populations 1.23356 0.76255 1.05558 1.02507 1.86081 1.23578 1.26691 1.89059 1.18979 0.91849 0.85433 0.99481 1.21410 1.01562 0.90852 1.04040 1.21422 0.92162 0.99950 1.04019 1.18710 0.91568 0.84290 1.00213 1.86096 1.35382 1.11712 1.89266 1.22796 0.92864 0.82042 1.06910 1.20468 0.88530 0.85494 0.76788 1.90763 1.16343 1.87061 1.49865 1.45185 1.11391 1.03785 1.74388 1.26548 0.99288 0.90225 1.19850 0.77509 0.65752 0.60737 0.65071 1.26411 1.07594 1.13359 1.09543 1.26033 1.15536 1.06511 1.07300 1.27825 1.01470 1.10987 1.02587 1.21482 1.00985 0.92074 0.96819 1.21601 0.94140 0.99930 1.00812 1.21481 0.95913 0.97852 0.99137 1.21504 1.00507 0.93513 1.01495 1.21348 0.94976 0.98371 0.97883 1.19409 0.96372 0.90728 1.05288 1.25257 0.92280 1.13302 0.88629 1.86635 1.74152 1.42577 1.32276 0.84235 0.78204 0.72476 0.79700 1.16229 1.18624 1.19649 1.20276 0.92865 0.97271 1.05233 0.86913 0.91400 0.91226 0.82031 0.81066 0.85633 0.85833 0.73758 0.87045 0.90938 0.91898 0.91467 0.92877 0.89250 0.91110 0.89526 0.83405 0.84758 0.85320 0.85872 0.86177 0.90264 0.77581 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.45 10.50 -93.46 -0.98 -2.43 16 3 C 0.09 0.38 6.69 22.49 0.15 0.53 16 4 C -0.16 0.25 9.03 22.35 0.20 0.45 16 5 C -0.16 0.47 9.03 22.36 0.20 0.67 16 6 C 0.10 0.27 6.62 22.49 0.15 0.41 16 7 O -0.31 -0.90 8.56 -74.35 -0.64 -1.53 16 8 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 9 C 0.50 -0.29 7.77 87.66 0.68 0.39 16 10 O -0.56 -5.84 16.00 16.00 0.26 -5.58 16 11 N -0.69 5.37 4.69 -299.27 -1.40 3.96 16 12 C -0.19 1.04 5.31 127.77 0.68 1.71 16 13 Si 1.12 -6.68 11.36 68.60 0.78 -5.91 16 14 C -0.46 -0.42 8.53 113.37 0.97 0.54 16 15 C -0.44 4.25 8.52 113.37 0.97 5.21 16 16 C -0.39 0.04 4.59 22.27 0.10 0.14 16 17 C -0.10 0.09 9.29 22.27 0.21 0.30 16 18 C -0.15 -0.18 10.05 22.27 0.22 0.05 16 19 C -0.13 -0.40 10.05 22.27 0.22 -0.18 16 20 C -0.15 -0.67 10.05 22.27 0.22 -0.45 16 21 C -0.11 -0.40 9.29 22.27 0.21 -0.20 16 22 C -0.12 -0.76 5.28 -19.78 -0.10 -0.86 16 23 C -0.09 -0.66 2.33 71.24 0.17 -0.50 16 24 O -0.55 -5.46 12.65 -148.98 -1.89 -7.34 16 25 Si 1.03 6.76 25.73 68.60 1.77 8.53 16 26 H -0.24 -1.13 7.11 99.48 0.71 -0.43 16 27 H -0.26 -2.07 6.74 99.48 0.67 -1.40 16 28 H -0.27 -2.37 7.11 99.48 0.71 -1.66 16 29 C -0.14 -0.95 8.59 22.35 0.19 -0.76 16 30 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.07 -0.49 7.66 -2.39 -0.02 -0.50 16 32 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 33 H 0.16 -1.23 6.29 -2.91 -0.02 -1.25 16 34 H 0.17 -1.94 6.29 -2.91 -0.02 -1.96 16 35 H 0.13 -1.58 7.66 -2.39 -0.02 -1.60 16 36 H 0.12 -1.50 7.66 -2.38 -0.02 -1.52 16 37 H 0.42 -6.85 8.83 -92.71 -0.82 -7.67 16 38 H 0.11 -1.15 7.96 -2.38 -0.02 -1.17 16 39 H 0.07 0.07 7.10 -2.38 -0.02 0.06 16 40 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 41 H 0.07 0.04 7.96 -2.39 -0.02 0.03 16 42 H 0.05 0.27 7.69 -2.39 -0.02 0.26 16 43 H 0.09 -1.09 7.68 -2.39 -0.02 -1.11 16 44 H 0.07 -0.53 7.96 -2.38 -0.02 -0.55 16 45 H 0.09 -1.02 7.96 -2.38 -0.02 -1.04 16 46 H 0.15 -1.09 7.41 -2.91 -0.02 -1.12 16 47 H 0.13 -0.37 8.06 -2.91 -0.02 -0.40 16 48 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 49 H 0.12 0.26 8.06 -2.91 -0.02 0.23 16 50 H 0.12 0.31 7.43 -2.91 -0.02 0.28 16 51 H 0.08 0.58 7.82 -2.39 -0.02 0.56 16 52 H 0.38 2.53 8.60 -74.05 -0.64 1.89 16 53 H 0.13 0.92 4.88 -2.91 -0.01 0.91 16 Total: 0.00 -27.12 439.31 5.02 -22.10 By element: Atomic # 1 Polarization: -20.69 SS G_CDS: 0.20 Total: -20.48 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.92 Total: 8.69 kcal Atomic # 7 Polarization: 5.37 SS G_CDS: -1.40 Total: 3.96 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -3.25 Total: -16.89 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.54 Total: 2.62 kcal Total: -27.12 5.02 -22.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_8803168_4974302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.300 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds