Wall clock time and date at job start Mon Mar 8 2021 00:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 125.56421 * 2 1 4 4 C 1.50700 * 126.06973 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47407 * 128.27072 * 4 3 2 6 6 Si 1.86305 * 109.46677 * 248.26762 * 4 3 2 7 7 H 1.48503 * 109.47073 * 66.02564 * 6 4 3 8 8 H 1.48498 * 109.46784 * 186.02176 * 6 4 3 9 9 H 1.48493 * 109.47278 * 306.02292 * 6 4 3 10 10 C 1.39842 * 107.86468 * 179.97438 * 3 2 1 11 11 C 1.50698 * 126.45688 * 179.97438 * 10 3 2 12 12 C 1.37877 * 107.08309 * 359.97438 * 10 3 2 13 13 C 1.46672 * 126.23191 * 180.02562 * 12 10 3 14 14 O 1.21700 * 119.99983 * 359.97438 * 13 12 10 15 15 N 1.34773 * 119.99962 * 180.02562 * 13 12 10 16 16 C 1.46507 * 120.00219 * 179.97438 * 15 13 12 17 17 C 1.52991 * 109.47379 * 180.02562 * 16 15 13 18 18 Si 1.86297 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.86301 * 109.47370 * 59.99726 * 18 17 16 20 20 C 1.86301 * 109.47433 * 179.97438 * 18 17 16 21 21 C 1.86300 * 109.46948 * 299.99866 * 18 17 16 22 22 N 1.35537 * 125.56031 * 179.69019 * 2 1 3 23 23 H 1.08997 * 109.47032 * 83.53783 * 1 2 3 24 24 H 1.09005 * 109.47037 * 323.54442 * 1 2 3 25 25 H 1.08998 * 109.47013 * 203.54287 * 1 2 3 26 26 H 1.08999 * 109.46991 * 8.26112 * 4 3 2 27 27 H 0.96697 * 113.99765 * 59.99745 * 5 4 3 28 28 H 1.09002 * 109.46772 * 95.65699 * 11 10 3 29 29 H 1.08995 * 109.47013 * 215.64928 * 11 10 3 30 30 H 1.08999 * 109.47323 * 335.65171 * 11 10 3 31 31 H 0.96998 * 120.00362 * 0.02562 * 15 13 12 32 32 H 1.09003 * 109.47043 * 300.00388 * 16 15 13 33 33 H 1.09005 * 109.46792 * 59.99567 * 16 15 13 34 34 H 1.09007 * 109.47239 * 299.99682 * 17 16 15 35 35 H 1.08995 * 109.47747 * 59.99998 * 17 16 15 36 36 H 1.08999 * 109.47110 * 59.99735 * 19 18 17 37 37 H 1.08997 * 109.47718 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.47026 * 300.00027 * 19 18 17 39 39 H 1.09002 * 109.46840 * 60.00221 * 20 18 17 40 40 H 1.09000 * 109.47203 * 179.97438 * 20 18 17 41 41 H 1.08995 * 109.47259 * 299.99934 * 20 18 17 42 42 H 1.08999 * 109.47056 * 59.99850 * 21 18 17 43 43 H 1.09006 * 109.47201 * 179.97438 * 21 18 17 44 44 H 1.09002 * 109.47354 * 299.99796 * 21 18 17 45 45 H 0.96994 * 125.68040 * 359.96942 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8200 2.5321 0.0005 5 8 2.4622 3.2469 1.0582 6 14 2.2410 3.3267 -1.6311 7 1 1.4604 2.6766 -2.7143 8 1 1.9058 4.7724 -1.5786 9 1 3.6922 3.1644 -1.9009 10 6 3.6270 0.6767 0.0006 11 6 4.8486 1.5591 0.0003 12 6 3.6122 -0.7020 0.0015 13 6 4.7859 -1.5816 0.0029 14 8 5.9049 -1.1031 0.0029 15 7 4.6252 -2.9197 0.0032 16 6 5.7975 -3.7984 0.0041 17 6 5.3406 -5.2584 0.0036 18 14 6.8314 -6.3757 0.0054 19 6 7.8533 -6.0453 1.5277 20 6 6.2750 -8.1537 0.0057 21 6 7.8567 -6.0455 -1.5145 22 7 2.2952 -1.1026 0.0060 23 1 -0.3633 0.1157 -1.0211 24 1 -0.3633 0.8266 0.6107 25 1 -0.3633 -0.9421 0.4105 26 1 0.7403 2.5564 0.1486 27 1 3.4266 3.2664 0.9908 28 1 5.2022 1.6904 1.0230 29 1 5.6322 1.0945 -0.5982 30 1 4.5950 2.5305 -0.4241 31 1 3.7333 -3.3011 0.0021 32 1 6.3969 -3.6053 -0.8857 33 1 6.3960 -3.6047 0.8943 34 1 4.7410 -5.4519 0.8932 35 1 4.7424 -5.4518 -0.8868 36 1 7.2533 -6.2384 2.4170 37 1 8.7257 -6.6986 1.5286 38 1 8.1789 -5.0050 1.5280 39 1 5.6769 -8.3473 -0.8848 40 1 7.1472 -8.8074 0.0063 41 1 5.6753 -8.3467 0.8951 42 1 8.1823 -5.0052 -1.5142 43 1 8.7293 -6.6989 -1.5133 44 1 7.2589 -6.2388 -2.4052 45 1 1.9833 -2.0210 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12297754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:19:21 Heat of formation + Delta-G solvation = -87.563906 kcal Electronic energy + Delta-G solvation = -22380.260701 eV Core-core repulsion = 19135.090862 eV Total energy + Delta-G solvation = -3245.169838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.66142 -40.27211 -37.80114 -36.41257 -33.74599 -33.14854 -31.36398 -29.33550 -29.30952 -28.33024 -28.32072 -27.36301 -26.33159 -23.61313 -22.38359 -20.88783 -20.24112 -19.30956 -17.84602 -17.07660 -16.79713 -16.67974 -15.99649 -15.65513 -15.57491 -14.82462 -14.77967 -14.40018 -14.33070 -14.12468 -14.05790 -13.91440 -13.85212 -13.73933 -13.57819 -13.40521 -13.20966 -13.17770 -13.12054 -13.00317 -12.83075 -12.61158 -12.52053 -12.40039 -12.11359 -11.65873 -11.25198 -10.74140 -10.72372 -10.63439 -10.59563 -10.22519 -9.51011 -8.96239 0.35652 1.11787 1.45180 1.50338 1.69782 1.70327 1.98324 1.99658 2.00822 2.06909 2.27132 2.32490 2.73702 3.62520 3.80136 3.86354 3.96903 4.08102 4.18015 4.22282 4.40004 4.49435 4.57394 4.65600 4.77931 4.79473 4.80416 4.80492 4.83975 4.84778 4.86177 4.86968 4.98308 5.01375 5.05385 5.14396 5.19278 5.29575 5.40478 5.57412 5.64654 5.66216 5.69466 5.86273 6.38739 6.54948 6.66775 7.10190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.089 3.911 3 C -0.230 4.230 4 C -0.036 4.036 5 O -0.555 6.555 6 Si 0.961 3.039 7 H -0.258 1.258 8 H -0.266 1.266 9 H -0.258 1.258 10 C -0.081 4.081 11 C -0.102 4.102 12 C -0.079 4.079 13 C 0.581 3.419 14 O -0.568 6.568 15 N -0.718 5.718 16 C 0.122 3.878 17 C -0.433 4.433 18 Si 1.101 2.899 19 C -0.475 4.475 20 C -0.463 4.463 21 C -0.475 4.475 22 N -0.522 5.522 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.379 0.621 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -5.332 -0.700 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.031 4.031 3 C -0.236 4.236 4 C -0.148 4.148 5 O -0.363 6.363 6 Si 0.785 3.215 7 H -0.182 1.182 8 H -0.190 1.190 9 H -0.182 1.182 10 C -0.090 4.090 11 C -0.159 4.159 12 C -0.191 4.191 13 C 0.370 3.630 14 O -0.448 6.448 15 N -0.371 5.371 16 C 0.000 4.000 17 C -0.516 4.516 18 Si 1.291 2.709 19 C -0.580 4.580 20 C -0.570 4.570 21 C -0.580 4.580 22 N -0.120 5.120 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.148 0.852 27 H 0.228 0.772 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.244 0.756 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.232 -4.742 -1.302 7.180 hybrid contribution 0.386 -0.881 0.198 0.982 sum -4.846 -5.623 -1.104 7.504 Atomic orbital electron populations 1.20681 0.84793 1.05298 1.04788 1.20740 0.94973 0.84945 1.02456 1.19646 0.92302 0.96093 1.15575 1.24276 1.01355 0.88739 1.00392 1.86464 1.24996 1.75368 1.49429 0.85635 0.80906 0.78926 0.76008 1.18174 1.19011 1.18201 1.19921 0.95219 0.91852 1.01978 1.20547 0.94432 0.98015 1.02881 1.19971 0.83749 0.93835 1.21539 1.17277 0.87226 0.82376 0.76130 1.90811 1.25673 1.75979 1.52290 1.46024 1.11169 1.04833 1.75043 1.21198 0.87614 0.89258 1.01952 1.26624 1.17078 1.01215 1.06662 0.77779 0.63832 0.64861 0.64396 1.26467 1.10030 1.04587 1.16959 1.26266 1.06080 1.19889 1.04734 1.26465 1.10067 1.04585 1.16910 1.41767 1.04232 1.09251 1.56771 0.88684 0.88645 0.89348 0.85162 0.77205 0.90563 0.91731 0.90720 0.75595 0.91877 0.91881 0.88500 0.88480 0.91106 0.91441 0.91969 0.90924 0.91440 0.90925 0.91967 0.91440 0.91096 0.72831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.84 9.98 71.24 0.71 1.55 16 2 C 0.09 -0.13 7.13 41.34 0.29 0.16 16 3 C -0.23 -0.67 4.44 -20.12 -0.09 -0.76 16 4 C -0.04 -0.04 2.84 71.24 0.20 0.16 16 5 O -0.56 -2.34 12.87 -148.98 -1.92 -4.25 16 6 Si 0.96 1.88 26.79 68.60 1.84 3.72 16 7 H -0.26 -0.68 7.11 99.48 0.71 0.03 16 8 H -0.27 -1.09 7.11 99.48 0.71 -0.38 16 9 H -0.26 -1.05 5.79 99.48 0.58 -0.47 16 10 C -0.08 -0.53 5.87 -19.56 -0.11 -0.65 16 11 C -0.10 -0.66 8.15 71.24 0.58 -0.08 16 12 C -0.08 -0.40 7.06 40.35 0.28 -0.11 16 13 C 0.58 4.29 7.79 86.45 0.67 4.96 16 14 O -0.57 -8.58 14.94 -4.35 -0.06 -8.65 16 15 N -0.72 0.15 5.55 -467.08 -2.59 -2.44 16 16 C 0.12 -0.11 5.05 86.37 0.44 0.32 16 17 C -0.43 3.28 4.56 71.98 0.33 3.60 16 18 Si 1.10 -8.21 12.19 68.60 0.84 -7.37 16 19 C -0.48 1.45 8.65 113.37 0.98 2.43 16 20 C -0.46 2.69 8.65 113.37 0.98 3.67 16 21 C -0.47 1.48 8.65 113.37 0.98 2.46 16 22 N -0.52 1.25 5.99 -171.93 -1.03 0.22 16 23 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H 0.09 -0.86 7.28 -2.38 -0.02 -0.87 16 25 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 26 H 0.13 -0.41 6.68 -2.39 -0.02 -0.42 16 27 H 0.38 0.25 6.23 -74.06 -0.46 -0.21 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.68 6.80 -2.39 -0.02 0.66 16 30 H 0.07 0.24 4.11 -2.39 -0.01 0.23 16 31 H 0.41 -2.84 7.60 -92.71 -0.70 -3.54 16 32 H 0.06 0.06 7.79 -2.39 -0.02 0.05 16 33 H 0.06 0.07 7.79 -2.38 -0.02 0.05 16 34 H 0.10 -0.92 7.96 -2.38 -0.02 -0.94 16 35 H 0.10 -0.93 7.96 -2.39 -0.02 -0.95 16 36 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 37 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 38 H 0.06 -0.07 7.79 -2.38 -0.02 -0.09 16 39 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 40 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 41 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 42 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 43 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 44 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 45 H 0.43 -4.18 8.19 -92.71 -0.76 -4.94 16 Total: 0.00 -19.77 361.31 3.02 -16.76 By element: Atomic # 1 Polarization: -15.40 SS G_CDS: -0.30 Total: -15.70 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 6.25 Total: 17.72 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -3.62 Total: -2.22 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.98 Total: -12.90 kcal Atomic # 14 Polarization: -6.33 SS G_CDS: 2.67 Total: -3.65 kcal Total: -19.77 3.02 -16.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12297754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.808 kcal (2) G-P(sol) polarization free energy of solvation -19.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds