Wall clock time and date at job start Mon Mar 8 2021 00:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34857 * 125.89740 * 2 1 4 4 C 1.40941 * 107.46371 * 180.29318 * 3 2 1 5 5 C 1.50697 * 126.26172 * 179.75858 * 4 3 2 6 6 O 1.42901 * 109.47370 * 104.97653 * 5 4 3 7 7 Si 1.86300 * 109.47208 * 344.97718 * 5 4 3 8 8 H 1.48498 * 109.47260 * 60.00293 * 7 5 4 9 9 H 1.48504 * 109.46839 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47289 * 299.99838 * 7 5 4 11 11 C 1.34851 * 107.46884 * 359.74000 * 4 3 2 12 12 C 1.50688 * 125.89645 * 179.97438 * 11 4 3 13 13 N 1.36563 * 108.20136 * 359.97438 * 11 4 3 14 14 C 1.40225 * 125.66950 * 179.97438 * 13 11 4 15 15 C 1.38902 * 119.99261 * 65.00340 * 14 13 11 16 16 C 1.38264 * 120.22784 * 180.02562 * 15 14 13 17 17 C 1.37978 * 120.21794 * 0.02562 * 16 15 14 18 18 C 1.39616 * 119.98210 * 0.02562 * 17 16 15 19 19 C 1.47862 * 120.10843 * 180.02562 * 18 17 16 20 20 O 1.21552 * 119.99676 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00030 * 359.97438 * 19 18 17 22 22 C 1.46504 * 119.99531 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46883 * 179.97438 * 22 21 19 24 24 Si 1.86301 * 109.47122 * 180.02562 * 23 22 21 25 25 C 1.86303 * 109.46963 * 60.00142 * 24 23 22 26 26 C 1.86300 * 109.46857 * 180.02562 * 24 23 22 27 27 C 1.86304 * 109.46996 * 300.00264 * 24 23 22 28 28 C 1.38589 * 119.99324 * 245.30521 * 14 13 11 29 29 H 1.09001 * 109.46642 * 270.15166 * 1 2 3 30 30 H 1.08991 * 109.47566 * 30.14950 * 1 2 3 31 31 H 1.09000 * 109.47234 * 150.15848 * 1 2 3 32 32 H 1.08007 * 126.26387 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46950 * 224.97888 * 5 4 3 34 34 H 0.96700 * 113.99692 * 300.00368 * 6 5 4 35 35 H 1.09003 * 109.47314 * 270.02064 * 12 11 4 36 36 H 1.09001 * 109.48049 * 30.02256 * 12 11 4 37 37 H 1.09004 * 109.47175 * 150.02605 * 12 11 4 38 38 H 1.08000 * 119.88952 * 0.04253 * 15 14 13 39 39 H 1.08000 * 119.89337 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.00666 * 179.97438 * 17 16 15 41 41 H 0.96992 * 120.00503 * 359.97438 * 21 19 18 42 42 H 1.09001 * 109.46891 * 60.00097 * 22 21 19 43 43 H 1.08993 * 109.47378 * 299.99469 * 22 21 19 44 44 H 1.09001 * 109.46801 * 300.00349 * 23 22 21 45 45 H 1.09001 * 109.46998 * 59.99945 * 23 22 21 46 46 H 1.09004 * 109.47066 * 60.00039 * 25 24 23 47 47 H 1.09004 * 109.46812 * 179.97438 * 25 24 23 48 48 H 1.08992 * 109.47172 * 299.99973 * 25 24 23 49 49 H 1.09001 * 109.47391 * 60.00270 * 26 24 23 50 50 H 1.09000 * 109.46785 * 180.02562 * 26 24 23 51 51 H 1.09004 * 109.47174 * 299.99962 * 26 24 23 52 52 H 1.09002 * 109.47281 * 59.99948 * 27 24 23 53 53 H 1.09004 * 109.46722 * 180.02562 * 27 24 23 54 54 H 1.09001 * 109.46859 * 300.00049 * 27 24 23 55 55 H 1.07999 * 120.11085 * 359.97209 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6468 -0.0069 5 6 4.8646 1.5177 -0.0145 6 8 5.4617 1.5102 1.2838 7 14 4.3885 3.2606 -0.4689 8 1 3.4177 3.7838 0.5255 9 1 5.6006 4.1186 -0.4770 10 1 3.7681 3.2685 -1.8180 11 6 3.6121 -0.7015 -0.0050 12 6 4.8178 -1.6055 -0.0111 13 7 2.3079 -1.1062 0.0034 14 6 1.8645 -2.4365 0.0073 15 6 2.1339 -3.2550 1.0967 16 6 1.6995 -4.5676 1.1054 17 6 0.9959 -5.0734 0.0317 18 6 0.7210 -4.2589 -1.0684 19 6 -0.0333 -4.7978 -2.2203 20 8 -0.2719 -4.0868 -3.1768 21 7 -0.4563 -6.0774 -2.2096 22 6 -1.2042 -6.6111 -3.3508 23 6 -1.5616 -8.0752 -3.0864 24 14 -2.5120 -8.7542 -4.5378 25 6 -1.4652 -8.6382 -6.0746 26 6 -2.9479 -10.5366 -4.2156 27 6 -4.0738 -7.7664 -4.7743 28 6 1.1630 -2.9362 -1.0785 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8885 -0.5161 31 1 -0.3634 -0.8914 -0.5114 32 1 1.9669 2.1206 0.0004 33 1 5.5773 1.1337 -0.7445 34 1 4.8829 1.8398 1.9848 35 1 5.1025 -1.8245 -1.0402 36 1 5.6454 -1.1110 0.4975 37 1 4.5776 -2.5351 0.5050 38 1 2.6844 -2.8648 1.9400 39 1 1.9124 -5.1994 1.9551 40 1 0.6586 -6.0993 0.0420 41 1 -0.2656 -6.6450 -1.4465 42 1 -0.5919 -6.5436 -4.2500 43 1 -2.1177 -6.0330 -3.4889 44 1 -0.6478 -8.6531 -2.9485 45 1 -2.1737 -8.1431 -2.1870 46 1 -0.5514 -9.2161 -5.9362 47 1 -2.0211 -9.0359 -6.9237 48 1 -1.2105 -7.5954 -6.2629 49 1 -3.5605 -10.6040 -3.3166 50 1 -3.5035 -10.9340 -5.0650 51 1 -2.0343 -11.1147 -4.0769 52 1 -3.8191 -6.7235 -4.9626 53 1 -4.6301 -8.1640 -5.6233 54 1 -4.6862 -7.8343 -3.8752 55 1 0.9565 -2.3024 -1.9283 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12335854.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:28:02 Heat of formation + Delta-G solvation = -40.750986 kcal Electronic energy + Delta-G solvation = -31399.459442 eV Core-core repulsion = 27332.339764 eV Total energy + Delta-G solvation = -4067.119678 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.194 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.92810 -41.26349 -39.46375 -37.67933 -36.44373 -34.43795 -33.74574 -32.60044 -31.40872 -30.23568 -30.16679 -29.26332 -28.32351 -28.30142 -27.22991 -25.44053 -24.76850 -23.72031 -23.20706 -21.95998 -21.05533 -20.35598 -18.77801 -17.65304 -17.56988 -17.39700 -17.16517 -16.66175 -16.60607 -15.90920 -15.79857 -15.39600 -15.15909 -15.07800 -14.91537 -14.69717 -14.51046 -14.29128 -14.16636 -14.13392 -13.93677 -13.87213 -13.74411 -13.64452 -13.48797 -13.29475 -13.23658 -13.18612 -13.16118 -12.98768 -12.96471 -12.80051 -12.65467 -12.50910 -12.39134 -12.18279 -12.06275 -11.63763 -11.44130 -10.72568 -10.71215 -10.62619 -10.48313 -10.34969 -10.26769 -10.06766 -9.54954 -8.86688 -0.44712 -0.06430 1.05273 1.27975 1.49911 1.56652 1.63966 1.65498 1.76407 1.79626 1.98481 1.99365 2.02362 2.28344 2.57552 2.74319 3.51746 3.65231 3.66916 3.70824 3.87906 3.91228 3.96093 4.09974 4.12023 4.18052 4.24432 4.31948 4.38546 4.44684 4.59270 4.62640 4.66199 4.67939 4.70735 4.71983 4.79912 4.81312 4.84651 4.85278 4.88289 4.89544 4.95297 4.97930 5.04296 5.04412 5.05402 5.11990 5.14713 5.22381 5.31761 5.41201 5.53729 5.58854 5.65235 5.68299 5.94410 6.11305 6.41915 6.44676 6.79907 7.07389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.014 3.986 3 C -0.207 4.207 4 C -0.208 4.208 5 C -0.040 4.040 6 O -0.554 6.554 7 Si 0.991 3.009 8 H -0.255 1.255 9 H -0.274 1.274 10 H -0.272 1.272 11 C 0.043 3.957 12 C -0.086 4.086 13 N -0.406 5.406 14 C 0.098 3.902 15 C -0.084 4.084 16 C -0.099 4.099 17 C -0.066 4.066 18 C -0.133 4.133 19 C 0.550 3.450 20 O -0.583 6.583 21 N -0.707 5.707 22 C 0.119 3.881 23 C -0.431 4.431 24 Si 1.100 2.900 25 C -0.477 4.477 26 C -0.462 4.462 27 C -0.476 4.476 28 C -0.068 4.068 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.112 0.888 34 H 0.386 0.614 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.144 0.856 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.416 0.584 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.060 0.940 53 H 0.065 0.935 54 H 0.071 0.929 55 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -7.867 4.987 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.231 4.231 4 C -0.214 4.214 5 C -0.152 4.152 6 O -0.360 6.360 7 Si 0.817 3.183 8 H -0.178 1.178 9 H -0.199 1.199 10 H -0.197 1.197 11 C -0.067 4.067 12 C -0.143 4.143 13 N -0.081 5.081 14 C 0.009 3.991 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.084 4.084 18 C -0.137 4.137 19 C 0.338 3.662 20 O -0.465 6.465 21 N -0.360 5.360 22 C -0.004 4.004 23 C -0.515 4.515 24 Si 1.290 2.710 25 C -0.582 4.582 26 C -0.569 4.569 27 C -0.581 4.581 28 C -0.088 4.088 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.165 0.835 33 H 0.130 0.870 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.194 0.806 40 H 0.187 0.813 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.084 0.916 54 H 0.090 0.910 55 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.510 -7.092 3.748 8.162 hybrid contribution -0.468 0.056 0.126 0.488 sum -1.978 -7.036 3.874 8.272 Atomic orbital electron populations 1.20390 0.86956 1.03515 1.03369 1.20727 0.94336 0.85148 1.09221 1.20809 0.92407 0.98118 1.11716 1.19792 0.95089 0.93103 1.13427 1.24225 0.94199 1.08047 0.88692 1.86431 1.43856 1.88728 1.17025 0.85113 0.78668 0.74700 0.79853 1.17834 1.19937 1.19684 1.20613 0.84353 0.94366 1.07326 1.20415 0.93113 0.97731 1.03025 1.41514 1.05729 1.03244 1.57607 1.17667 1.01963 0.83712 0.95799 1.21649 0.98111 0.94526 0.96084 1.21457 0.96368 0.94295 0.99573 1.21798 0.95011 1.00574 0.91052 1.19785 1.03109 0.94467 0.96351 1.18535 0.78887 0.82562 0.86218 1.90787 1.58864 1.59667 1.37139 1.46051 1.56038 1.11131 1.22756 1.21240 0.95691 0.94950 0.88503 1.26601 1.10509 0.97386 1.16986 0.77798 0.64139 0.65167 0.63881 1.26489 1.10411 1.04022 1.17250 1.26259 1.05629 1.19947 1.05088 1.26482 1.17689 1.09192 1.04763 1.21119 0.96046 0.95078 0.96571 0.90006 0.89054 0.92406 0.83542 0.86968 0.76578 0.90954 0.88913 0.90945 0.83814 0.80619 0.81346 0.74490 0.91980 0.91893 0.88145 0.88101 0.91027 0.91559 0.92091 0.90820 0.91565 0.90847 0.92070 0.91560 0.90989 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.08 71.24 0.72 0.48 16 2 C 0.01 0.09 6.81 41.05 0.28 0.37 16 3 C -0.21 -1.36 9.27 22.16 0.21 -1.16 16 4 C -0.21 -1.29 5.35 -19.98 -0.11 -1.39 16 5 C -0.04 -0.14 2.50 71.24 0.18 0.04 16 6 O -0.55 -1.82 12.88 -148.98 -1.92 -3.74 16 7 Si 0.99 3.26 26.13 68.60 1.79 5.05 16 8 H -0.25 -0.77 7.05 99.48 0.70 -0.07 16 9 H -0.27 -1.52 7.11 99.48 0.71 -0.82 16 10 H -0.27 -1.69 7.11 99.48 0.71 -0.99 16 11 C 0.04 0.26 6.81 41.04 0.28 0.54 16 12 C -0.09 -0.15 9.87 71.23 0.70 0.55 16 13 N -0.41 -2.54 2.79 -320.38 -0.89 -3.43 16 14 C 0.10 0.34 5.01 38.04 0.19 0.53 16 15 C -0.08 0.19 8.77 22.44 0.20 0.38 16 16 C -0.10 0.72 10.02 22.21 0.22 0.95 16 17 C -0.07 0.42 9.54 22.54 0.21 0.63 16 18 C -0.13 -0.23 5.87 -20.10 -0.12 -0.35 16 19 C 0.55 3.04 7.77 86.79 0.67 3.72 16 20 O -0.58 -8.85 16.34 -3.88 -0.06 -8.92 16 21 N -0.71 1.45 5.51 -465.95 -2.57 -1.12 16 22 C 0.12 -0.24 5.05 86.38 0.44 0.19 16 23 C -0.43 3.81 4.56 71.98 0.33 4.14 16 24 Si 1.10 -8.91 12.19 68.60 0.84 -8.08 16 25 C -0.48 1.62 8.65 113.37 0.98 2.61 16 26 C -0.46 3.00 8.65 113.37 0.98 3.98 16 27 C -0.48 1.69 8.65 113.37 0.98 2.67 16 28 C -0.07 -0.39 8.31 22.65 0.19 -0.20 16 29 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 0.25 6.84 -2.39 -0.02 0.23 16 32 H 0.15 0.60 6.55 -2.91 -0.02 0.58 16 33 H 0.11 0.24 7.96 -2.38 -0.02 0.22 16 34 H 0.39 -0.93 8.70 -74.06 -0.64 -1.58 16 35 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.09 0.13 7.87 -2.39 -0.02 0.11 16 37 H 0.07 -0.03 6.84 -2.39 -0.02 -0.05 16 38 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 39 H 0.18 -2.45 8.06 -2.91 -0.02 -2.48 16 40 H 0.17 -2.34 6.40 -2.91 -0.02 -2.36 16 41 H 0.42 -3.93 6.50 -92.71 -0.60 -4.54 16 42 H 0.06 0.01 7.79 -2.39 -0.02 0.00 16 43 H 0.06 0.00 7.79 -2.39 -0.02 -0.01 16 44 H 0.10 -1.12 7.96 -2.39 -0.02 -1.14 16 45 H 0.10 -1.13 7.96 -2.39 -0.02 -1.15 16 46 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 47 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 48 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 49 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 50 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 51 H 0.07 -0.50 7.96 -2.38 -0.02 -0.52 16 52 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 53 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 54 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 55 H 0.11 1.23 7.65 -2.91 -0.02 1.21 16 Total: 0.00 -22.51 447.35 5.11 -17.40 By element: Atomic # 1 Polarization: -16.25 SS G_CDS: 0.39 Total: -15.86 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 7.53 Total: 18.69 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -3.46 Total: -4.55 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.98 Total: -12.66 kcal Atomic # 14 Polarization: -5.65 SS G_CDS: 2.63 Total: -3.02 kcal Total: -22.51 5.11 -17.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12335854.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.353 kcal (2) G-P(sol) polarization free energy of solvation -22.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds