Wall clock time and date at job start Mon Mar 8 2021 00:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34807 * 125.90116 * 2 1 4 4 C 1.40995 * 107.48461 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.25398 * 179.73491 * 4 3 2 6 6 O 1.42896 * 109.46939 * 105.02954 * 5 4 3 7 7 Si 1.86298 * 109.47552 * 345.02860 * 5 4 3 8 8 H 1.48498 * 109.46864 * 59.99679 * 7 5 4 9 9 H 1.48492 * 109.47508 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46722 * 300.00082 * 7 5 4 11 11 C 1.34806 * 107.48616 * 0.02562 * 4 3 2 12 12 C 1.50704 * 125.90011 * 179.97438 * 11 4 3 13 13 N 1.36644 * 108.19301 * 359.97438 * 11 4 3 14 14 C 1.39679 * 125.67886 * 180.02562 * 13 11 4 15 15 C 1.38716 * 120.15693 * 269.67653 * 14 13 11 16 16 C 1.38115 * 120.07141 * 179.74531 * 15 14 13 17 17 C 1.38489 * 120.39114 * 0.55837 * 16 15 14 18 18 C 1.37863 * 120.31261 * 359.69891 * 17 16 15 19 19 C 1.39627 * 119.91784 * 0.02562 * 18 17 16 20 20 C 1.47570 * 120.19195 * 179.97438 * 19 18 17 21 21 O 1.21585 * 120.00159 * 180.02562 * 20 19 18 22 22 N 1.34778 * 120.00232 * 0.02562 * 20 19 18 23 23 C 1.46510 * 119.99956 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47047 * 180.02562 * 23 22 20 25 25 Si 1.86300 * 109.47193 * 179.97438 * 24 23 22 26 26 C 1.86297 * 109.47097 * 59.99719 * 25 24 23 27 27 C 1.86303 * 109.47059 * 179.97438 * 25 24 23 28 28 C 1.86295 * 109.46817 * 299.99803 * 25 24 23 29 29 H 1.09001 * 109.47026 * 89.97441 * 1 2 3 30 30 H 1.09004 * 109.46747 * 209.97567 * 1 2 3 31 31 H 1.08998 * 109.47078 * 329.97877 * 1 2 3 32 32 H 1.07999 * 126.25770 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47144 * 225.02679 * 5 4 3 34 34 H 0.96700 * 114.00213 * 299.99795 * 6 5 4 35 35 H 1.08997 * 109.47123 * 90.02143 * 12 11 4 36 36 H 1.09003 * 109.46763 * 210.02180 * 12 11 4 37 37 H 1.08999 * 109.47235 * 330.01959 * 12 11 4 38 38 H 1.07997 * 119.96303 * 0.02562 * 15 14 13 39 39 H 1.08002 * 119.80329 * 180.25936 * 16 15 14 40 40 H 1.07996 * 119.84436 * 179.72351 * 17 16 15 41 41 H 1.07997 * 120.04618 * 179.97438 * 18 17 16 42 42 H 0.97000 * 119.99838 * 359.97438 * 22 20 19 43 43 H 1.09001 * 109.47046 * 299.99635 * 23 22 20 44 44 H 1.09001 * 109.46976 * 59.99542 * 23 22 20 45 45 H 1.09001 * 109.46898 * 299.99724 * 24 23 22 46 46 H 1.09002 * 109.47178 * 59.99606 * 24 23 22 47 47 H 1.09001 * 109.47195 * 60.00096 * 26 25 24 48 48 H 1.08994 * 109.47014 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47040 * 300.00268 * 26 25 24 50 50 H 1.09002 * 109.47017 * 59.99845 * 27 25 24 51 51 H 1.08998 * 109.46603 * 179.97438 * 27 25 24 52 52 H 1.08993 * 109.47347 * 300.00166 * 27 25 24 53 53 H 1.08997 * 109.47545 * 60.00503 * 28 25 24 54 54 H 1.09007 * 109.47007 * 179.97438 * 28 25 24 55 55 H 1.09001 * 109.47180 * 299.99523 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6465 -0.0006 5 6 4.8647 1.5180 -0.0064 6 8 5.4577 1.5138 1.2937 7 14 4.3894 3.2596 -0.4665 8 1 3.4151 3.7847 0.5236 9 1 5.6010 4.1181 -0.4729 10 1 3.7732 3.2639 -1.8176 11 6 3.6134 -0.7013 -0.0015 12 6 4.8196 -1.6047 -0.0030 13 7 2.3085 -1.1068 -0.0009 14 6 1.8672 -2.4321 -0.0010 15 6 1.6400 -3.0908 -1.2005 16 6 1.2087 -4.4029 -1.1986 17 6 0.9890 -5.0664 -0.0030 18 6 1.2046 -4.4255 1.1983 19 6 1.6461 -3.1009 1.2116 20 6 1.8784 -2.4088 2.4940 21 8 2.2624 -1.2552 2.5015 22 7 1.6648 -3.0554 3.6571 23 6 1.8948 -2.3681 4.9304 24 6 1.5808 -3.3189 6.0872 25 14 1.8741 -2.4451 7.7062 26 6 0.7685 -0.9495 7.8139 27 6 1.4910 -3.6026 9.1149 28 6 3.6554 -1.9092 7.8089 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 1.9666 2.1200 -0.0004 33 1 5.5798 1.1326 -0.7332 34 1 4.8766 1.8449 1.9921 35 1 5.1109 -1.8235 1.0243 36 1 4.5766 -2.5344 -0.5176 37 1 5.6437 -1.1097 -0.5167 38 1 1.8048 -2.5785 -2.1368 39 1 1.0372 -4.9129 -2.1350 40 1 0.6475 -6.0909 -0.0118 41 1 1.0315 -4.9469 2.1281 42 1 1.3581 -3.9757 3.6512 43 1 2.9370 -2.0546 4.9909 44 1 1.2480 -1.4930 4.9929 45 1 0.5388 -3.6327 6.0269 46 1 2.2280 -4.1937 6.0244 47 1 -0.2737 -1.2631 7.7539 48 1 0.9404 -0.4381 8.7610 49 1 0.9922 -0.2722 6.9898 50 1 2.1376 -4.4779 9.0520 51 1 1.6630 -3.0915 10.0621 52 1 0.4488 -3.9158 9.0546 53 1 3.8791 -1.2318 6.9848 54 1 3.8269 -1.3976 8.7560 55 1 4.3022 -2.7843 7.7459 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12335856.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:32:31 Heat of formation + Delta-G solvation = -28.655392 kcal Electronic energy + Delta-G solvation = -33291.371819 eV Core-core repulsion = 29224.776645 eV Total energy + Delta-G solvation = -4066.595173 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 374.194 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.85450 -40.93839 -39.37523 -37.66014 -36.33267 -34.17661 -33.58921 -32.98091 -30.93255 -30.35465 -30.11364 -29.27980 -28.33967 -28.31953 -27.20164 -25.30537 -24.58240 -23.78703 -23.11440 -21.73806 -20.99209 -20.29125 -18.88076 -17.86108 -17.53017 -17.37984 -16.59042 -16.55115 -16.20610 -15.96179 -15.76837 -15.65789 -15.09976 -14.94680 -14.74220 -14.52829 -14.45756 -14.25780 -14.17232 -14.11515 -13.94839 -13.87779 -13.74643 -13.56504 -13.40195 -13.26812 -13.20817 -13.17096 -13.11605 -13.00602 -12.91171 -12.82318 -12.69932 -12.41778 -12.38295 -12.17174 -12.02966 -11.59873 -11.24893 -10.74061 -10.72779 -10.58532 -10.31011 -10.29082 -10.09950 -9.96185 -9.53598 -8.68021 -0.40284 0.04656 1.20509 1.29056 1.51050 1.57658 1.70871 1.78681 1.91032 1.93478 1.97665 2.00507 2.01161 2.30045 2.62394 2.73230 3.60886 3.63482 3.70983 3.77326 3.96851 4.03970 4.11733 4.18715 4.21463 4.22926 4.25100 4.35702 4.40317 4.49670 4.58265 4.63597 4.64855 4.69735 4.73133 4.77054 4.78441 4.79838 4.83081 4.83773 4.86824 4.87749 4.94816 4.97532 5.02570 5.06176 5.17765 5.20697 5.25524 5.29094 5.43156 5.44759 5.56972 5.63592 5.64324 5.66532 6.11200 6.26235 6.48961 6.63598 6.75433 7.17966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 C -0.215 4.215 4 C -0.210 4.210 5 C -0.046 4.046 6 O -0.558 6.558 7 Si 0.999 3.001 8 H -0.264 1.264 9 H -0.274 1.274 10 H -0.263 1.263 11 C 0.057 3.943 12 C -0.073 4.073 13 N -0.392 5.392 14 C 0.142 3.858 15 C -0.122 4.122 16 C -0.077 4.077 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.145 4.145 20 C 0.536 3.464 21 O -0.547 6.547 22 N -0.714 5.714 23 C 0.128 3.872 24 C -0.431 4.431 25 Si 1.098 2.902 26 C -0.474 4.474 27 C -0.461 4.461 28 C -0.475 4.475 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.381 0.619 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.411 0.589 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.073 0.927 53 H 0.059 0.941 54 H 0.066 0.934 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -8.989 0.499 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.239 4.239 4 C -0.217 4.217 5 C -0.156 4.156 6 O -0.364 6.364 7 Si 0.824 3.176 8 H -0.189 1.189 9 H -0.199 1.199 10 H -0.187 1.187 11 C -0.053 4.053 12 C -0.131 4.131 13 N -0.066 5.066 14 C 0.052 3.948 15 C -0.141 4.141 16 C -0.096 4.096 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.149 4.149 20 C 0.323 3.677 21 O -0.425 6.425 22 N -0.368 5.368 23 C 0.005 3.995 24 C -0.515 4.515 25 Si 1.288 2.712 26 C -0.579 4.579 27 C -0.568 4.568 28 C -0.580 4.580 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.182 0.818 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.249 0.751 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.092 0.908 53 H 0.078 0.922 54 H 0.085 0.915 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.061 -7.864 -0.026 8.851 hybrid contribution -0.396 -0.155 0.555 0.700 sum -4.457 -8.019 0.529 9.190 Atomic orbital electron populations 1.20272 0.87289 1.02875 1.02960 1.20458 0.93875 0.85068 1.08213 1.20613 0.92617 0.97693 1.13011 1.19624 0.94851 0.93114 1.14103 1.24335 0.94444 1.08614 0.88240 1.86401 1.43808 1.88833 1.17347 0.85028 0.78394 0.74329 0.79881 1.18873 1.19873 1.18692 1.20249 0.84217 0.94010 1.06837 1.20210 0.93482 0.97461 1.01926 1.41032 1.05349 1.02938 1.57274 1.17835 1.00003 0.83527 0.93451 1.21473 0.99978 0.96245 0.96444 1.21686 0.94652 0.92615 1.00626 1.21685 0.97732 1.01941 0.91041 1.21629 0.95610 0.91370 1.00936 1.20297 1.06057 0.96443 0.92144 1.18526 0.78130 0.86316 0.84712 1.90898 1.45885 1.17851 1.87854 1.46070 1.68361 1.17313 1.05099 1.21091 1.00764 0.95833 0.81826 1.26605 1.06725 1.06359 1.11770 0.77834 0.64318 0.64621 0.64412 1.26455 1.11099 1.16276 1.04089 1.26239 1.05512 1.11092 1.13959 1.26473 1.21670 1.05797 1.04072 0.89949 0.92781 0.89857 0.84486 0.87031 0.77107 0.92429 0.91713 0.89360 0.84649 0.81829 0.81265 0.82200 0.75079 0.92496 0.92377 0.88358 0.88440 0.91024 0.91449 0.92198 0.90858 0.91436 0.90810 0.92221 0.91455 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.09 71.24 0.72 0.31 16 2 C 0.03 0.35 6.01 41.02 0.25 0.60 16 3 C -0.22 -2.51 9.27 22.16 0.21 -2.31 16 4 C -0.21 -2.41 5.35 -19.98 -0.11 -2.52 16 5 C -0.05 -0.37 2.60 71.24 0.19 -0.19 16 6 O -0.56 -5.58 12.88 -148.98 -1.92 -7.50 16 7 Si 1.00 6.51 26.13 68.60 1.79 8.31 16 8 H -0.26 -2.02 7.04 99.48 0.70 -1.31 16 9 H -0.27 -2.21 7.11 99.48 0.71 -1.50 16 10 H -0.26 -1.99 7.11 99.48 0.71 -1.28 16 11 C 0.06 0.64 6.00 41.02 0.25 0.89 16 12 C -0.07 -0.56 9.88 71.24 0.70 0.15 16 13 N -0.39 -3.87 1.44 -319.54 -0.46 -4.33 16 14 C 0.14 0.75 4.52 38.49 0.17 0.92 16 15 C -0.12 -0.01 9.96 22.35 0.22 0.22 16 16 C -0.08 0.46 10.03 22.30 0.22 0.68 16 17 C -0.11 0.84 10.02 22.24 0.22 1.06 16 18 C -0.08 0.38 9.54 22.52 0.21 0.60 16 19 C -0.15 -0.44 5.89 -19.99 -0.12 -0.56 16 20 C 0.54 3.76 7.77 86.71 0.67 4.44 16 21 O -0.55 -8.32 13.69 -3.98 -0.05 -8.38 16 22 N -0.71 -0.07 5.51 -466.22 -2.57 -2.64 16 23 C 0.13 0.00 5.05 86.38 0.44 0.43 16 24 C -0.43 2.96 4.56 71.98 0.33 3.29 16 25 Si 1.10 -7.28 12.19 68.60 0.84 -6.44 16 26 C -0.47 1.08 8.65 113.37 0.98 2.06 16 27 C -0.46 2.49 8.65 113.37 0.98 3.47 16 28 C -0.47 0.92 8.65 113.37 0.98 1.90 16 29 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.05 0.31 7.83 -2.39 -0.02 0.29 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.14 1.29 6.55 -2.91 -0.02 1.27 16 33 H 0.11 0.65 7.49 -2.39 -0.02 0.63 16 34 H 0.38 2.31 8.70 -74.06 -0.64 1.67 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.33 7.83 -2.39 -0.02 0.31 16 37 H 0.09 0.47 7.49 -2.39 -0.02 0.46 16 38 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.16 -1.85 8.06 -2.91 -0.02 -1.87 16 40 H 0.17 -2.39 8.06 -2.91 -0.02 -2.41 16 41 H 0.16 -1.81 6.40 -2.91 -0.02 -1.83 16 42 H 0.41 -2.72 6.50 -92.71 -0.60 -3.33 16 43 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 44 H 0.06 0.14 7.79 -2.39 -0.02 0.12 16 45 H 0.10 -0.90 7.96 -2.39 -0.02 -0.92 16 46 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 47 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 48 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 49 H 0.06 0.00 7.79 -2.39 -0.02 -0.02 16 50 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 51 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 52 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 53 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 54 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 55 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 Total: 0.00 -22.42 445.81 5.53 -16.89 By element: Atomic # 1 Polarization: -11.75 SS G_CDS: 0.38 Total: -11.37 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.52 Total: 15.46 kcal Atomic # 7 Polarization: -3.94 SS G_CDS: -3.03 Total: -6.97 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.97 Total: -15.87 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: 2.63 Total: 1.86 kcal Total: -22.42 5.53 -16.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12335856.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.763 kcal (2) G-P(sol) polarization free energy of solvation -22.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds