Wall clock time and date at job start Mon Mar 8 2021 00:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47544 * 2 1 4 4 C 1.53003 * 109.47153 * 171.17088 * 3 2 1 5 5 C 1.52999 * 109.47596 * 291.17555 * 3 2 1 6 6 C 1.50697 * 109.47570 * 174.43239 * 5 3 2 7 7 O 1.21280 * 120.00221 * 121.55500 * 6 5 3 8 8 N 1.34781 * 119.99743 * 301.56095 * 6 5 3 9 9 C 1.46496 * 119.99419 * 185.08970 * 8 6 5 10 10 C 1.53004 * 109.46951 * 179.97438 * 9 8 6 11 11 Si 1.86295 * 109.47515 * 179.97438 * 10 9 8 12 12 C 1.86298 * 109.47108 * 59.99942 * 11 10 9 13 13 C 1.86294 * 109.47307 * 180.02562 * 11 10 9 14 14 C 1.86300 * 109.47198 * 300.00111 * 11 10 9 15 15 N 1.46502 * 109.46820 * 294.43405 * 5 3 2 16 16 C 1.36345 * 125.63425 * 303.68637 * 15 5 3 17 17 C 1.34851 * 108.21351 * 179.97438 * 16 15 5 18 18 C 1.40882 * 107.42247 * 0.26689 * 17 16 15 19 19 C 1.34851 * 107.41897 * 359.56175 * 18 17 16 20 20 C 1.50695 * 125.89580 * 180.15688 * 19 18 17 21 21 O 1.42899 * 109.47270 * 132.09781 * 20 19 18 22 22 Si 1.86300 * 109.46987 * 12.09955 * 20 19 18 23 23 H 1.48494 * 109.46948 * 60.00069 * 22 20 19 24 24 H 1.48505 * 109.46849 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47146 * 299.99757 * 22 20 19 26 26 H 1.08989 * 109.47488 * 173.84630 * 1 2 3 27 27 H 1.09001 * 109.46903 * 293.84611 * 1 2 3 28 28 H 1.08996 * 109.46916 * 53.83851 * 1 2 3 29 29 H 1.09000 * 109.46955 * 240.00260 * 2 1 3 30 30 H 1.09002 * 109.47227 * 120.00337 * 2 1 3 31 31 H 1.09006 * 109.46813 * 51.17688 * 3 2 1 32 32 H 1.09002 * 109.47118 * 167.28790 * 4 3 2 33 33 H 1.08994 * 109.47483 * 287.28768 * 4 3 2 34 34 H 1.08998 * 109.46779 * 47.29289 * 4 3 2 35 35 H 1.09001 * 109.46825 * 54.42710 * 5 3 2 36 36 H 0.96996 * 120.00182 * 5.08503 * 8 6 5 37 37 H 1.09001 * 109.47368 * 299.99215 * 9 8 6 38 38 H 1.08997 * 109.47984 * 60.00136 * 9 8 6 39 39 H 1.09008 * 109.47054 * 299.99967 * 10 9 8 40 40 H 1.09002 * 109.47167 * 59.99969 * 10 9 8 41 41 H 1.09001 * 109.47294 * 59.99853 * 12 11 10 42 42 H 1.09003 * 109.47527 * 180.02562 * 12 11 10 43 43 H 1.09003 * 109.47388 * 299.99992 * 12 11 10 44 44 H 1.09002 * 109.47294 * 60.00113 * 13 11 10 45 45 H 1.09003 * 109.47318 * 180.02562 * 13 11 10 46 46 H 1.09005 * 109.47308 * 299.99475 * 13 11 10 47 47 H 1.09002 * 109.47366 * 59.99400 * 14 11 10 48 48 H 1.08995 * 109.47666 * 179.97438 * 14 11 10 49 49 H 1.09007 * 109.46794 * 300.00067 * 14 11 10 50 50 H 1.07992 * 125.89339 * 359.97438 * 16 15 5 51 51 H 1.08009 * 126.28670 * 179.97438 * 17 16 15 52 52 H 1.08001 * 126.29663 * 179.70622 * 18 17 16 53 53 H 1.08999 * 109.47130 * 252.09626 * 20 19 18 54 54 H 0.96695 * 114.00393 * 297.42250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5540 1.4480 0.2214 5 6 1.7189 2.0971 -1.3451 6 6 2.0973 3.5550 -1.2973 7 8 2.8986 3.9998 -2.0916 8 7 1.5452 4.3645 -0.3719 9 6 1.8266 5.8020 -0.3949 10 6 1.0819 6.4858 0.7535 11 14 1.4402 8.3138 0.7249 12 6 0.8736 9.0323 -0.8978 13 6 0.5340 9.1463 2.1236 14 6 3.2721 8.5906 0.9207 15 7 2.4775 1.4301 -2.4062 16 6 3.8327 1.2845 -2.4426 17 6 4.1550 0.6196 -3.5706 18 6 2.9556 0.3500 -4.2587 19 6 1.9450 0.8519 -3.5203 20 6 0.4803 0.7905 -3.8695 21 8 -0.2617 0.3416 -2.7338 22 14 0.2284 -0.3954 -5.2841 23 1 0.6998 -1.7464 -4.8872 24 1 -1.2150 -0.4563 -5.6277 25 1 0.9995 0.0711 -6.4643 26 1 -0.3634 -1.0216 -0.1101 27 1 -0.3633 0.4155 0.9400 28 1 -0.3633 0.6064 -0.8297 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5538 1.9997 0.8007 32 1 3.9500 2.4389 -0.0008 33 1 3.7704 1.1946 1.2592 34 1 4.0201 0.7146 -0.4366 35 1 0.6520 2.0050 -1.5483 36 1 0.9616 3.9953 0.3092 37 1 2.8984 5.9643 -0.2809 38 1 1.4944 6.2223 -1.3441 39 1 0.0100 6.3235 0.6392 40 1 1.4137 6.0658 1.7030 41 1 -0.1982 8.8704 -1.0125 42 1 1.0836 10.1018 -0.9148 43 1 1.4042 8.5453 -1.7160 44 1 0.8660 8.7258 3.0729 45 1 0.7433 10.2159 2.1066 46 1 -0.5379 8.9844 2.0094 47 1 3.8027 8.1035 0.1026 48 1 3.4819 9.6601 0.9035 49 1 3.6036 8.1702 1.8702 50 1 4.5279 1.6403 -1.6968 51 1 5.1503 0.3481 -3.8904 52 1 2.8622 -0.1660 -5.2029 53 1 0.1343 1.7822 -4.1607 54 1 -0.0339 -0.5520 -2.4431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12360566.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:42:19 Heat of formation + Delta-G solvation = -59.516950 kcal Electronic energy + Delta-G solvation = -29843.344338 eV Core-core repulsion = 26132.777850 eV Total energy + Delta-G solvation = -3710.566488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.210 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.87222 -40.61943 -37.86030 -37.61190 -36.36456 -33.06198 -31.61783 -31.45052 -30.64349 -29.35549 -28.33741 -28.31782 -27.96884 -25.90680 -24.73109 -23.54452 -22.18398 -21.66831 -21.47750 -20.19786 -18.92931 -18.15163 -17.31861 -16.95835 -16.73050 -16.41097 -15.95126 -15.62686 -15.47561 -15.05495 -14.77133 -14.59225 -14.39573 -14.31362 -14.15686 -14.10722 -13.93833 -13.85389 -13.79176 -13.70684 -13.45188 -13.21146 -13.18879 -13.16614 -13.00198 -12.82457 -12.80370 -12.40283 -12.30337 -12.14246 -12.00660 -11.82991 -11.76148 -11.72755 -11.47814 -11.23547 -10.73828 -10.72447 -10.63436 -10.52466 -10.15759 -9.52627 -8.94155 1.06576 1.16518 1.40644 1.53007 1.57936 1.71357 1.89429 1.98132 2.00886 2.04289 2.09170 2.37809 2.73485 3.32556 3.46386 3.58061 3.65244 3.83189 3.95379 4.13167 4.18914 4.23527 4.27214 4.38641 4.51375 4.56022 4.60158 4.65128 4.66464 4.70359 4.77097 4.78405 4.80139 4.83363 4.83725 4.87052 4.88144 4.90635 5.03438 5.06936 5.18196 5.23809 5.26602 5.28648 5.35880 5.36919 5.42742 5.57290 5.63753 5.65248 5.66903 6.02181 6.26334 6.31255 6.51077 6.56791 7.09138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.088 4.088 4 C -0.167 4.167 5 C 0.115 3.885 6 C 0.497 3.503 7 O -0.568 6.568 8 N -0.711 5.711 9 C 0.122 3.878 10 C -0.431 4.431 11 Si 1.099 2.901 12 C -0.475 4.475 13 C -0.462 4.462 14 C -0.475 4.475 15 N -0.406 5.406 16 C 0.004 3.996 17 C -0.224 4.224 18 C -0.213 4.213 19 C -0.021 4.021 20 C -0.060 4.060 21 O -0.539 6.539 22 Si 1.011 2.989 23 H -0.254 1.254 24 H -0.264 1.264 25 H -0.269 1.269 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.416 0.584 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.169 0.831 51 H 0.140 0.860 52 H 0.140 0.860 53 H 0.117 0.883 54 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -0.596 6.126 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.150 4.150 3 C -0.107 4.107 4 C -0.224 4.224 5 C 0.009 3.991 6 C 0.282 3.718 7 O -0.446 6.446 8 N -0.365 5.365 9 C 0.000 4.000 10 C -0.514 4.514 11 Si 1.289 2.711 12 C -0.580 4.580 13 C -0.569 4.569 14 C -0.580 4.580 15 N -0.082 5.082 16 C -0.127 4.127 17 C -0.248 4.248 18 C -0.238 4.238 19 C -0.132 4.132 20 C -0.170 4.170 21 O -0.347 6.347 22 Si 0.833 3.167 23 H -0.177 1.177 24 H -0.188 1.188 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.253 0.747 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.186 0.814 51 H 0.158 0.842 52 H 0.158 0.842 53 H 0.135 0.865 54 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.487 -0.088 5.090 6.786 hybrid contribution 0.712 -0.028 0.328 0.785 sum -3.774 -0.117 5.418 6.604 Atomic orbital electron populations 1.22144 0.94285 1.03144 1.03313 1.21507 0.97133 0.93993 1.02342 1.21532 0.97425 0.98445 0.93287 1.22363 0.95230 1.01449 1.03382 1.21764 0.99583 0.88286 0.89425 1.21097 0.80767 0.89062 0.80897 1.90769 1.34820 1.77230 1.41818 1.46111 1.50209 1.08474 1.31659 1.21165 1.00191 0.79107 0.99578 1.26592 1.04827 1.19869 1.00149 0.77822 0.64498 0.63951 0.64865 1.26474 1.06177 1.07038 1.18359 1.26260 1.08730 1.07768 1.14172 1.26471 1.22483 1.04641 1.04416 1.43516 1.05636 1.42027 1.16977 1.22184 0.84368 1.04857 1.01251 1.21035 0.98850 1.07933 0.96951 1.20826 0.92658 1.08682 1.01652 1.21035 0.96216 1.05450 0.90514 1.24700 0.85410 1.08213 0.98632 1.86451 1.63799 1.37546 1.46896 0.84795 0.79150 0.77387 0.75329 1.17708 1.18808 1.19334 0.92127 0.92098 0.89873 0.92700 0.90966 0.87118 0.93859 0.90593 0.91218 0.83153 0.74684 0.92179 0.92268 0.88267 0.88263 0.91008 0.91528 0.92148 0.90855 0.91525 0.90861 0.92148 0.91535 0.91019 0.81413 0.84249 0.84227 0.86510 0.76288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.19 8.57 71.98 0.62 1.81 16 2 C -0.11 0.55 5.32 30.59 0.16 0.71 16 3 C -0.09 0.38 2.12 -10.79 -0.02 0.35 16 4 C -0.17 0.28 7.41 71.98 0.53 0.82 16 5 C 0.12 0.03 2.33 44.24 0.10 0.13 16 6 C 0.50 2.16 5.97 87.66 0.52 2.68 16 7 O -0.57 -7.99 15.66 -3.03 -0.05 -8.03 16 8 N -0.71 1.53 5.45 -463.06 -2.52 -1.00 16 9 C 0.12 -0.21 5.05 86.38 0.44 0.22 16 10 C -0.43 3.51 4.56 71.98 0.33 3.83 16 11 Si 1.10 -8.28 12.19 68.60 0.84 -7.45 16 12 C -0.48 1.43 8.65 113.37 0.98 2.42 16 13 C -0.46 2.73 8.65 113.37 0.98 3.71 16 14 C -0.47 1.45 8.65 113.37 0.98 2.43 16 15 N -0.41 -1.96 1.69 -491.52 -0.83 -2.79 16 16 C 0.00 0.03 7.87 83.21 0.66 0.68 16 17 C -0.22 -1.90 10.86 22.14 0.24 -1.66 16 18 C -0.21 -1.57 9.38 22.14 0.21 -1.36 16 19 C -0.02 -0.10 6.26 41.08 0.26 0.15 16 20 C -0.06 0.00 2.63 71.23 0.19 0.19 16 21 O -0.54 1.74 8.41 -148.98 -1.25 0.49 16 22 Si 1.01 -0.13 25.94 68.60 1.78 1.65 16 23 H -0.25 -0.11 7.11 99.48 0.71 0.59 16 24 H -0.26 -0.31 7.11 99.48 0.71 0.39 16 25 H -0.27 -0.80 7.08 99.48 0.70 -0.10 16 26 H 0.06 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.06 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.08 -0.52 3.63 -2.39 -0.01 -0.53 16 29 H 0.05 -0.09 7.55 -2.39 -0.02 -0.11 16 30 H 0.07 -0.38 8.12 -2.39 -0.02 -0.39 16 31 H 0.11 -0.96 7.20 -2.38 -0.02 -0.98 16 32 H 0.04 0.08 6.55 -2.39 -0.02 0.06 16 33 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 34 H 0.07 0.03 5.32 -2.39 -0.01 0.02 16 35 H 0.15 -0.28 4.67 -2.39 -0.01 -0.29 16 36 H 0.42 -3.53 7.59 -92.71 -0.70 -4.23 16 37 H 0.06 0.04 7.79 -2.39 -0.02 0.02 16 38 H 0.06 0.04 7.79 -2.39 -0.02 0.02 16 39 H 0.10 -1.01 7.96 -2.38 -0.02 -1.03 16 40 H 0.10 -1.02 7.96 -2.39 -0.02 -1.04 16 41 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 43 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 44 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 45 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 46 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 47 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 48 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 49 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 50 H 0.17 1.02 5.35 -2.91 -0.02 1.00 16 51 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 52 H 0.14 0.71 6.32 -2.91 -0.02 0.69 16 53 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 54 H 0.39 -2.75 7.55 -74.06 -0.56 -3.31 16 Total: 0.00 -17.52 408.06 5.50 -12.02 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: 0.37 Total: -12.00 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.17 Total: 17.12 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -3.36 Total: -3.79 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -1.30 Total: -7.55 kcal Atomic # 14 Polarization: -8.42 SS G_CDS: 2.62 Total: -5.80 kcal Total: -17.52 5.50 -12.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12360566.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.502 kcal (2) G-P(sol) polarization free energy of solvation -17.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds