Wall clock time and date at job start Mon Mar 8 2021 00:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.35656 * 117.00310 * 2 1 4 4 C 1.38667 * 120.14816 * 0.03003 * 3 2 1 5 5 C 1.38099 * 120.08682 * 179.97438 * 4 3 2 6 6 C 1.38502 * 120.38871 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.85032 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47086 * 120.00281 * 7 6 5 9 9 Si 1.86297 * 109.47178 * 0.02562 * 7 6 5 10 10 H 1.48501 * 109.47168 * 59.99639 * 9 7 6 11 11 H 1.48496 * 109.47174 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46988 * 299.99850 * 9 7 6 13 13 C 1.37835 * 120.30024 * 359.74779 * 6 5 4 14 14 C 1.39665 * 119.90511 * 0.48976 * 13 6 5 15 15 C 1.47536 * 120.18998 * 179.79047 * 14 13 6 16 16 O 1.21592 * 120.00173 * 179.71886 * 15 14 13 17 17 N 1.34777 * 120.00030 * 359.72168 * 15 14 13 18 18 C 1.46506 * 119.99873 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47035 * 179.97438 * 18 17 15 20 20 Si 1.86300 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.86293 * 109.47364 * 59.99679 * 20 19 18 22 22 C 1.86299 * 109.46872 * 180.02562 * 20 19 18 23 23 C 1.86295 * 109.46927 * 299.99595 * 20 19 18 24 24 H 1.09001 * 109.47111 * 299.99638 * 1 2 3 25 25 H 1.09005 * 109.47213 * 59.99614 * 1 2 3 26 26 H 1.09000 * 109.47404 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.95580 * 359.97090 * 4 3 2 28 28 H 1.07998 * 119.80539 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47122 * 240.00204 * 7 6 5 30 30 H 0.96697 * 113.99686 * 300.00315 * 8 7 6 31 31 H 1.07999 * 120.04475 * 180.27249 * 13 6 5 32 32 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 33 33 H 1.09004 * 109.47073 * 299.99562 * 18 17 15 34 34 H 1.09000 * 109.47212 * 59.99645 * 18 17 15 35 35 H 1.09004 * 109.46930 * 299.99770 * 19 18 17 36 36 H 1.09004 * 109.47059 * 59.99372 * 19 18 17 37 37 H 1.09004 * 109.47023 * 59.99982 * 21 20 19 38 38 H 1.09002 * 109.47236 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47444 * 300.00289 * 21 20 19 40 40 H 1.09000 * 109.47475 * 59.99837 * 22 20 19 41 41 H 1.09002 * 109.46888 * 179.97438 * 22 20 19 42 42 H 1.09004 * 109.46947 * 299.99671 * 22 20 19 43 43 H 1.09001 * 109.47207 * 60.00119 * 23 20 19 44 44 H 1.09002 * 109.47492 * 180.02562 * 23 20 19 45 45 H 1.09000 * 109.47314 * 300.00098 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3736 0.0006 5 6 1.9210 3.6034 0.0012 6 6 3.3037 3.6837 0.0005 7 6 3.9767 5.0320 0.0017 8 8 4.7928 5.1560 1.1682 9 14 2.6825 6.3721 0.0047 10 1 1.8362 6.2402 1.2177 11 1 3.3457 7.7007 0.0065 12 1 1.8341 6.2435 -1.2072 13 6 4.0669 2.5360 0.0046 14 6 3.4444 1.2857 -0.0009 15 6 4.2553 0.0532 -0.0013 16 8 3.7098 -1.0335 -0.0010 17 7 5.6008 0.1317 -0.0019 18 6 6.4060 -1.0922 -0.0028 19 6 7.8914 -0.7255 -0.0040 20 14 8.9153 -2.2819 -0.0044 21 6 8.5218 -3.2838 -1.5248 22 6 10.7240 -1.8353 -0.0050 23 6 8.5241 -3.2829 1.5174 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2140 2.3191 0.0006 28 1 1.3307 4.5078 0.0021 29 1 4.5982 5.1287 -0.8885 30 1 4.3048 5.0799 1.9995 31 1 5.1448 2.6034 0.0086 32 1 6.0360 0.9986 -0.0025 33 1 6.1769 -1.6785 0.8871 34 1 6.1759 -1.6778 -0.8929 35 1 8.1202 -0.1394 -0.8941 36 1 8.1217 -0.1396 0.8859 37 1 8.7507 -2.6981 -2.4152 38 1 9.1205 -4.1946 -1.5248 39 1 7.4635 -3.5451 -1.5240 40 1 10.9539 -1.2493 0.8848 41 1 11.3230 -2.7459 -0.0048 42 1 10.9532 -1.2493 -0.8952 43 1 7.4659 -3.5441 1.5183 44 1 9.1235 -4.1933 1.5175 45 1 8.7544 -2.6967 2.4070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:42:55 Heat of formation + Delta-G solvation = -126.507377 kcal Electronic energy + Delta-G solvation = -23768.547569 eV Core-core repulsion = 20295.744213 eV Total energy + Delta-G solvation = -3472.803357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67686 -39.88441 -39.19956 -37.17307 -36.05143 -33.05958 -31.88712 -30.93135 -29.38708 -28.55756 -28.43204 -28.40490 -26.20954 -25.34002 -23.56974 -22.33703 -21.29601 -19.50416 -18.40841 -18.13120 -17.23740 -16.86363 -16.56768 -16.28688 -16.22943 -16.00163 -15.85944 -15.20717 -14.85894 -14.63421 -14.44596 -14.25294 -14.03150 -13.95986 -13.78338 -13.71517 -13.46426 -13.30105 -13.20777 -13.19606 -13.08754 -12.78668 -12.43676 -12.37905 -12.35066 -12.13704 -12.08692 -11.68372 -11.15092 -10.84111 -10.80623 -10.63926 -10.35390 -10.20572 -9.86721 -9.25223 -0.22663 0.20793 1.07328 1.35498 1.42632 1.63395 1.83844 1.84687 1.86154 1.93297 2.23971 2.38364 2.67798 2.78292 3.36086 3.50292 3.64172 3.67168 3.96942 4.05583 4.15971 4.20774 4.21611 4.21665 4.38212 4.52210 4.58053 4.65089 4.69658 4.71090 4.73412 4.76269 4.76712 4.78527 4.82412 4.90464 5.00398 5.06515 5.21655 5.24590 5.46524 5.51058 5.55157 5.58301 5.60179 6.31230 6.46507 6.67107 7.43866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.192 3.808 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.170 4.170 7 C -0.075 4.075 8 O -0.539 6.539 9 Si 0.947 3.053 10 H -0.251 1.251 11 H -0.252 1.252 12 H -0.250 1.250 13 C -0.018 4.018 14 C -0.174 4.174 15 C 0.557 3.443 16 O -0.518 6.518 17 N -0.729 5.729 18 C 0.130 3.870 19 C -0.434 4.434 20 Si 1.024 2.976 21 C -0.454 4.454 22 C -0.451 4.451 23 C -0.454 4.454 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.377 0.623 31 H 0.138 0.862 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 2.960 0.089 2.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.143 3.857 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.170 4.170 7 C -0.185 4.185 8 O -0.344 6.344 9 Si 0.770 3.230 10 H -0.175 1.175 11 H -0.176 1.176 12 H -0.174 1.174 13 C -0.037 4.037 14 C -0.177 4.177 15 C 0.344 3.656 16 O -0.394 6.394 17 N -0.383 5.383 18 C 0.008 3.992 19 C -0.518 4.518 20 Si 1.219 2.781 21 C -0.561 4.561 22 C -0.558 4.558 23 C -0.561 4.561 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.158 0.842 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.224 0.776 31 H 0.155 0.845 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.400 2.675 -0.358 2.729 hybrid contribution -0.245 0.236 0.345 0.485 sum -0.644 2.911 -0.013 2.982 Atomic orbital electron populations 1.23231 0.78265 1.04742 1.01398 1.86385 1.21128 1.25187 1.86200 1.19093 0.90993 0.85006 0.90605 1.21206 1.00682 0.91593 1.09745 1.21011 0.93927 0.97519 0.94992 1.20099 0.93390 0.96185 1.07355 1.24891 1.02744 0.98919 0.91978 1.86511 1.37185 1.95371 1.15360 0.85723 0.77270 0.78328 0.81724 1.17469 1.17608 1.17419 1.20975 0.99995 0.89725 0.92979 1.19401 0.90895 0.94077 1.13370 1.17985 0.82058 0.88603 0.76930 1.90841 1.71622 1.28584 1.48387 1.46106 1.05779 1.10145 1.76287 1.21047 0.88948 0.86776 1.02455 1.26583 1.02205 1.17506 1.05469 0.78968 0.66336 0.65544 0.67229 1.26189 1.05405 1.09241 1.15311 1.26130 1.19785 1.05476 1.04450 1.26189 1.05388 1.09238 1.15331 0.92356 0.92350 0.87649 0.84248 0.85536 0.86290 0.77562 0.84456 0.76624 0.91222 0.91236 0.89788 0.89759 0.91256 0.91166 0.91066 0.91226 0.91109 0.91235 0.91066 0.91169 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.14 8.57 -40.54 -0.35 -1.48 16 3 C 0.19 0.56 6.70 -38.70 -0.26 0.30 16 4 C -0.21 -0.10 9.03 -39.47 -0.36 -0.45 16 5 C -0.06 0.02 8.66 -39.54 -0.34 -0.32 16 6 C -0.17 0.07 5.39 -104.67 -0.56 -0.49 16 7 C -0.07 0.12 2.82 36.00 0.10 0.22 16 8 O -0.54 0.57 12.76 -35.23 -0.45 0.12 16 9 Si 0.95 -1.49 25.05 -169.99 -4.26 -5.75 16 10 H -0.25 0.35 7.11 56.52 0.40 0.75 16 11 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 12 H -0.25 0.26 7.11 56.52 0.40 0.66 16 13 C -0.02 0.00 9.08 -39.20 -0.36 -0.36 16 14 C -0.17 -0.48 5.89 -104.85 -0.62 -1.10 16 15 C 0.56 2.43 7.76 -12.47 -0.10 2.33 16 16 O -0.52 -4.23 15.16 -16.59 -0.25 -4.48 16 17 N -0.73 -0.86 5.51 -61.34 -0.34 -1.20 16 18 C 0.13 0.06 5.05 -4.04 -0.02 0.04 16 19 C -0.43 0.97 4.56 37.16 0.17 1.14 16 20 Si 1.02 -2.92 12.19 -169.99 -2.07 -5.00 16 21 C -0.45 0.56 8.65 101.05 0.87 1.43 16 22 C -0.45 0.83 8.65 101.05 0.87 1.71 16 23 C -0.45 0.55 8.65 101.05 0.87 1.42 16 24 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 25 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 26 H 0.11 -0.14 8.14 -51.93 -0.42 -0.57 16 27 H 0.14 -0.24 6.30 -52.49 -0.33 -0.57 16 28 H 0.13 -0.25 4.85 -52.49 -0.25 -0.51 16 29 H 0.12 -0.31 7.96 -51.93 -0.41 -0.72 16 30 H 0.38 -1.49 8.70 45.56 0.40 -1.10 16 31 H 0.14 -0.25 6.40 -52.49 -0.34 -0.58 16 32 H 0.40 -0.54 6.50 -40.82 -0.27 -0.81 16 33 H 0.07 0.07 7.79 -51.93 -0.40 -0.33 16 34 H 0.07 0.07 7.79 -51.93 -0.40 -0.33 16 35 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 36 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 43 H 0.07 -0.04 7.79 -51.93 -0.40 -0.45 16 44 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 45 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 LS Contribution 368.27 15.07 5.55 5.55 Total: 0.00 -8.41 368.27 -7.45 -15.86 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: -6.56 Total: -10.49 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 1.27 Total: 6.87 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -0.34 Total: -1.20 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -1.05 Total: -5.84 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: -6.33 Total: -10.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -8.41 -7.45 -15.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.646 kcal (2) G-P(sol) polarization free energy of solvation -8.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds