Wall clock time and date at job start Mon Mar 8 2021 00:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42888 * 1 3 3 C 1.35656 * 117.00310 * 2 1 4 4 C 1.38667 * 120.14816 * 0.03003 * 3 2 1 5 5 C 1.38099 * 120.08682 * 179.97438 * 4 3 2 6 6 C 1.38502 * 120.38871 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.85032 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47086 * 120.00281 * 7 6 5 9 9 Si 1.86297 * 109.47178 * 0.02562 * 7 6 5 10 10 H 1.48501 * 109.47168 * 59.99639 * 9 7 6 11 11 H 1.48496 * 109.47174 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46988 * 299.99850 * 9 7 6 13 13 C 1.37835 * 120.30024 * 359.74779 * 6 5 4 14 14 C 1.39665 * 119.90511 * 0.48976 * 13 6 5 15 15 C 1.47536 * 120.18998 * 179.79047 * 14 13 6 16 16 O 1.21592 * 120.00173 * 179.71886 * 15 14 13 17 17 N 1.34777 * 120.00030 * 359.72168 * 15 14 13 18 18 C 1.46506 * 119.99873 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47035 * 179.97438 * 18 17 15 20 20 Si 1.86300 * 109.47052 * 179.97438 * 19 18 17 21 21 C 1.86293 * 109.47364 * 59.99679 * 20 19 18 22 22 C 1.86299 * 109.46872 * 180.02562 * 20 19 18 23 23 C 1.86295 * 109.46927 * 299.99595 * 20 19 18 24 24 H 1.09001 * 109.47111 * 299.99638 * 1 2 3 25 25 H 1.09005 * 109.47213 * 59.99614 * 1 2 3 26 26 H 1.09000 * 109.47404 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.95580 * 359.97090 * 4 3 2 28 28 H 1.07998 * 119.80539 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47122 * 240.00204 * 7 6 5 30 30 H 0.96697 * 113.99686 * 300.00315 * 8 7 6 31 31 H 1.07999 * 120.04475 * 180.27249 * 13 6 5 32 32 H 0.96999 * 120.00047 * 359.97438 * 17 15 14 33 33 H 1.09004 * 109.47073 * 299.99562 * 18 17 15 34 34 H 1.09000 * 109.47212 * 59.99645 * 18 17 15 35 35 H 1.09004 * 109.46930 * 299.99770 * 19 18 17 36 36 H 1.09004 * 109.47059 * 59.99372 * 19 18 17 37 37 H 1.09004 * 109.47023 * 59.99982 * 21 20 19 38 38 H 1.09002 * 109.47236 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47444 * 300.00289 * 21 20 19 40 40 H 1.09000 * 109.47475 * 59.99837 * 22 20 19 41 41 H 1.09002 * 109.46888 * 179.97438 * 22 20 19 42 42 H 1.09004 * 109.46947 * 299.99671 * 22 20 19 43 43 H 1.09001 * 109.47207 * 60.00119 * 23 20 19 44 44 H 1.09002 * 109.47492 * 180.02562 * 23 20 19 45 45 H 1.09000 * 109.47314 * 300.00098 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3736 0.0006 5 6 1.9210 3.6034 0.0012 6 6 3.3037 3.6837 0.0005 7 6 3.9767 5.0320 0.0017 8 8 4.7928 5.1560 1.1682 9 14 2.6825 6.3721 0.0047 10 1 1.8362 6.2402 1.2177 11 1 3.3457 7.7007 0.0065 12 1 1.8341 6.2435 -1.2072 13 6 4.0669 2.5360 0.0046 14 6 3.4444 1.2857 -0.0009 15 6 4.2553 0.0532 -0.0013 16 8 3.7098 -1.0335 -0.0010 17 7 5.6008 0.1317 -0.0019 18 6 6.4060 -1.0922 -0.0028 19 6 7.8914 -0.7255 -0.0040 20 14 8.9153 -2.2819 -0.0044 21 6 8.5218 -3.2838 -1.5248 22 6 10.7240 -1.8353 -0.0050 23 6 8.5241 -3.2829 1.5174 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2140 2.3191 0.0006 28 1 1.3307 4.5078 0.0021 29 1 4.5982 5.1287 -0.8885 30 1 4.3048 5.0799 1.9995 31 1 5.1448 2.6034 0.0086 32 1 6.0360 0.9986 -0.0025 33 1 6.1769 -1.6785 0.8871 34 1 6.1759 -1.6778 -0.8929 35 1 8.1202 -0.1394 -0.8941 36 1 8.1217 -0.1396 0.8859 37 1 8.7507 -2.6981 -2.4152 38 1 9.1205 -4.1946 -1.5248 39 1 7.4635 -3.5451 -1.5240 40 1 10.9539 -1.2493 0.8848 41 1 11.3230 -2.7459 -0.0048 42 1 10.9532 -1.2493 -0.8952 43 1 7.4659 -3.5441 1.5183 44 1 9.1235 -4.1933 1.5175 45 1 8.7544 -2.6967 2.4070 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:42:54 Heat of formation + Delta-G solvation = -123.428061 kcal Electronic energy + Delta-G solvation = -23768.414040 eV Core-core repulsion = 20295.744213 eV Total energy + Delta-G solvation = -3472.669827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.151 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76133 -40.08485 -39.20060 -37.10644 -36.23895 -33.12149 -31.87302 -30.93024 -29.27368 -28.51491 -28.30698 -28.28829 -26.14203 -25.39920 -23.55427 -22.35265 -21.44921 -19.54545 -18.36089 -18.21574 -17.27434 -16.94392 -16.68868 -16.36737 -16.12424 -15.93704 -15.85946 -15.13383 -14.96175 -14.62721 -14.53668 -14.14222 -13.92002 -13.84786 -13.71498 -13.65749 -13.45522 -13.19319 -13.13788 -13.13292 -12.97482 -12.74244 -12.44001 -12.34825 -12.23583 -12.07591 -12.03857 -11.60759 -11.25517 -10.70941 -10.69467 -10.58612 -10.34415 -10.29922 -9.99760 -9.29612 -0.28986 0.19876 1.21498 1.49481 1.54419 1.75950 1.77595 1.95883 2.01471 2.04261 2.24187 2.36713 2.67611 2.77066 3.50391 3.54498 3.68904 3.75251 3.97312 4.11163 4.18363 4.27177 4.27780 4.32227 4.41225 4.63467 4.67598 4.68134 4.73946 4.81876 4.83146 4.86401 4.87196 4.89588 4.90446 4.91697 5.06593 5.06913 5.24473 5.29985 5.49776 5.55259 5.59990 5.66733 5.69269 6.28492 6.56731 6.74318 7.24163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.169 3.831 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.167 4.167 7 C -0.070 4.070 8 O -0.551 6.551 9 Si 0.975 3.025 10 H -0.251 1.251 11 H -0.276 1.276 12 H -0.256 1.256 13 C -0.013 4.013 14 C -0.196 4.196 15 C 0.550 3.450 16 O -0.568 6.568 17 N -0.716 5.716 18 C 0.123 3.877 19 C -0.434 4.434 20 Si 1.099 2.901 21 C -0.474 4.474 22 C -0.461 4.461 23 C -0.474 4.474 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.159 0.841 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.389 0.611 31 H 0.156 0.844 32 H 0.412 0.588 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 4.704 0.116 4.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.121 3.879 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.167 4.167 7 C -0.181 4.181 8 O -0.358 6.358 9 Si 0.800 3.200 10 H -0.175 1.175 11 H -0.202 1.202 12 H -0.180 1.180 13 C -0.032 4.032 14 C -0.200 4.200 15 C 0.338 3.662 16 O -0.449 6.449 17 N -0.370 5.370 18 C 0.000 4.000 19 C -0.517 4.517 20 Si 1.289 2.711 21 C -0.579 4.579 22 C -0.568 4.568 23 C -0.579 4.579 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.177 0.823 28 H 0.162 0.838 29 H 0.148 0.852 30 H 0.238 0.762 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.116 4.426 -0.320 4.439 hybrid contribution -0.405 -0.280 0.347 0.603 sum -0.289 4.145 0.027 4.156 Atomic orbital electron populations 1.23440 0.76609 1.05490 1.02749 1.86337 1.23134 1.26387 1.86609 1.19407 0.91434 0.85441 0.91641 1.21425 1.01640 0.91013 1.09094 1.21284 0.94260 0.97855 0.94006 1.20288 0.93477 0.96516 1.06439 1.24916 1.02889 0.97845 0.92412 1.86488 1.37872 1.95287 1.16118 0.85317 0.76619 0.76756 0.81281 1.17470 1.20171 1.17974 1.21138 1.00958 0.88898 0.92166 1.19499 0.91116 0.94272 1.15115 1.18382 0.82963 0.88598 0.76246 1.90801 1.72661 1.30356 1.51046 1.46090 1.04994 1.11136 1.74800 1.21162 0.90626 0.86573 1.01626 1.26654 0.99888 1.18433 1.06705 0.77822 0.65068 0.63747 0.64480 1.26451 1.04743 1.09811 1.16923 1.26243 1.20244 1.05540 1.04781 1.26452 1.04726 1.09810 1.16951 0.90927 0.90961 0.87347 0.82323 0.83762 0.85166 0.76175 0.82638 0.75054 0.92184 0.92175 0.88490 0.88516 0.91054 0.91371 0.92086 0.90900 0.91377 0.90889 0.92086 0.91371 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.16 8.57 -68.80 -0.59 -3.75 16 3 C 0.17 1.18 6.70 22.84 0.15 1.33 16 4 C -0.21 -0.13 9.03 22.34 0.20 0.07 16 5 C -0.06 0.10 8.66 22.30 0.19 0.30 16 6 C -0.17 0.33 5.39 -19.90 -0.11 0.23 16 7 C -0.07 0.34 2.82 71.24 0.20 0.54 16 8 O -0.55 2.01 12.76 -148.98 -1.90 0.11 16 9 Si 0.98 -4.24 25.05 68.60 1.72 -2.52 16 10 H -0.25 1.09 7.11 99.48 0.71 1.80 16 11 H -0.28 0.06 7.11 99.48 0.71 0.76 16 12 H -0.26 0.88 7.11 99.48 0.71 1.58 16 13 C -0.01 0.00 9.08 22.52 0.20 0.21 16 14 C -0.20 -1.28 5.89 -20.01 -0.12 -1.40 16 15 C 0.55 5.78 7.76 86.70 0.67 6.45 16 16 O -0.57 -10.97 15.16 16.91 0.26 -10.71 16 17 N -0.72 -2.20 5.51 -466.24 -2.57 -4.77 16 18 C 0.12 0.23 5.05 86.38 0.44 0.67 16 19 C -0.43 2.23 4.56 71.98 0.33 2.56 16 20 Si 1.10 -6.38 12.19 68.60 0.84 -5.54 16 21 C -0.47 0.81 8.65 113.37 0.98 1.79 16 22 C -0.46 2.11 8.65 113.37 0.98 3.09 16 23 C -0.47 0.79 8.65 113.37 0.98 1.77 16 24 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 25 H 0.07 -0.24 7.66 -2.38 -0.02 -0.26 16 26 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.16 -0.68 6.30 -2.91 -0.02 -0.70 16 28 H 0.15 -0.83 4.85 -2.91 -0.01 -0.85 16 29 H 0.13 -0.91 7.96 -2.39 -0.02 -0.93 16 30 H 0.39 -3.64 8.70 -74.06 -0.64 -4.28 16 31 H 0.16 -0.74 6.40 -2.91 -0.02 -0.76 16 32 H 0.41 -1.29 6.50 -92.71 -0.60 -1.89 16 33 H 0.06 0.23 7.79 -2.38 -0.02 0.21 16 34 H 0.06 0.23 7.79 -2.39 -0.02 0.21 16 35 H 0.10 -0.69 7.96 -2.38 -0.02 -0.71 16 36 H 0.10 -0.68 7.96 -2.39 -0.02 -0.70 16 37 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 38 H 0.07 -0.10 7.96 -2.39 -0.02 -0.11 16 39 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 40 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 41 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 43 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 44 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 45 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 Total: 0.00 -21.46 368.27 4.48 -16.98 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: 0.50 Total: -8.50 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.22 Total: 18.70 kcal Atomic # 7 Polarization: -2.20 SS G_CDS: -2.57 Total: -4.77 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -2.23 Total: -14.35 kcal Atomic # 14 Polarization: -10.62 SS G_CDS: 2.55 Total: -8.07 kcal Total: -21.46 4.48 -16.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.444 kcal (2) G-P(sol) polarization free energy of solvation -21.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds