Wall clock time and date at job start Mon Mar 8 2021 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86300 * 109.47185 * 2 1 4 4 C 1.86300 * 109.47159 * 239.99847 * 2 1 3 5 5 C 1.86305 * 109.46875 * 120.00111 * 2 1 3 6 6 C 1.53002 * 109.47036 * 60.00130 * 5 2 1 7 7 N 1.46498 * 109.46813 * 179.97438 * 6 5 2 8 8 C 1.34776 * 120.00128 * 179.97438 * 7 6 5 9 9 O 1.21572 * 119.99833 * 0.02562 * 8 7 6 10 10 C 1.47720 * 120.00351 * 179.97438 * 8 7 6 11 11 C 1.39634 * 120.11777 * 0.02562 * 10 8 7 12 12 C 1.37861 * 119.87740 * 179.97438 * 11 10 8 13 13 C 1.38627 * 120.12286 * 0.02562 * 12 11 10 14 14 F 1.35095 * 119.88113 * 179.97438 * 13 12 11 15 15 C 1.38681 * 120.23620 * 0.02562 * 13 12 11 16 16 C 1.50701 * 119.93837 * 179.97438 * 15 13 12 17 17 O 1.42895 * 109.47079 * 195.00416 * 16 15 13 18 18 Si 1.86301 * 109.47149 * 314.99911 * 16 15 13 19 19 H 1.48506 * 109.47302 * 59.99966 * 18 16 15 20 20 H 1.48503 * 109.47334 * 300.00099 * 18 16 15 21 21 H 1.48500 * 109.47376 * 180.02562 * 18 16 15 22 22 C 1.37809 * 120.12043 * 0.23345 * 15 13 12 23 23 H 1.08996 * 109.47045 * 299.99898 * 1 2 3 24 24 H 1.09000 * 109.46702 * 59.99949 * 1 2 3 25 25 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46916 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47103 * 300.00145 * 3 2 1 28 28 H 1.09001 * 109.46669 * 59.99869 * 3 2 1 29 29 H 1.09000 * 109.47329 * 300.00109 * 4 2 1 30 30 H 1.09000 * 109.47147 * 60.00476 * 4 2 1 31 31 H 1.08997 * 109.47006 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47277 * 299.99849 * 5 2 1 33 33 H 1.09006 * 109.46566 * 180.02562 * 5 2 1 34 34 H 1.09001 * 109.46940 * 59.99977 * 6 5 2 35 35 H 1.08997 * 109.47382 * 299.99747 * 6 5 2 36 36 H 0.97007 * 120.00051 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.05858 * 359.95871 * 11 10 8 38 38 H 1.08009 * 119.93497 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47380 * 74.99813 * 16 15 13 40 40 H 0.96696 * 114.00435 * 59.99627 * 17 16 15 41 41 H 1.08004 * 120.06040 * 179.72186 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5212 6 6 1.9739 -2.3208 1.5211 7 7 2.4627 -3.0116 2.7170 8 6 2.1368 -4.3018 2.9305 9 8 1.4376 -4.8925 2.1304 10 6 2.6302 -4.9985 4.1360 11 6 3.4339 -4.3226 5.0563 12 6 3.8911 -4.9775 6.1800 13 6 3.5548 -6.3048 6.3968 14 9 4.0059 -6.9419 7.4993 15 6 2.7577 -6.9811 5.4855 16 6 2.3967 -8.4240 5.7276 17 8 1.8839 -8.9954 4.5224 18 14 3.9145 -9.3625 6.2628 19 1 4.4476 -8.7688 7.5153 20 1 4.9470 -9.2825 5.1985 21 1 3.5589 -10.7846 6.5008 22 6 2.2997 -6.3376 4.3562 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5741 1.7564 0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1207 2.2702 0.8900 29 1 2.1207 -1.9059 -1.5211 30 1 2.1208 -0.3644 -2.4111 31 1 3.5740 -0.8779 -1.5213 32 1 2.1207 -0.3645 2.4111 33 1 3.5740 -0.8779 1.5214 34 1 2.3373 -2.8346 0.6311 35 1 0.8840 -2.3208 1.5211 36 1 3.0210 -2.5403 3.3552 37 1 3.6970 -3.2888 4.8880 38 1 4.5125 -4.4554 6.8926 39 1 1.6389 -8.4829 6.5088 40 1 2.5062 -8.9772 3.7826 41 1 1.6827 -6.8666 3.6449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:46:04 Heat of formation + Delta-G solvation = -126.534851 kcal Electronic energy + Delta-G solvation = -21729.134331 eV Core-core repulsion = 18261.095619 eV Total energy + Delta-G solvation = -3468.038713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.39278 -41.36300 -39.71247 -37.70592 -36.36768 -33.08418 -32.18175 -30.89788 -29.26057 -28.29714 -28.28419 -27.12188 -25.21354 -23.24936 -23.18922 -21.49142 -19.32674 -18.81966 -18.03869 -17.78445 -17.15015 -16.89644 -16.56142 -16.13245 -15.77370 -15.25337 -15.13898 -15.06633 -14.79818 -14.27439 -14.16716 -13.99983 -13.86808 -13.84125 -13.70842 -13.38676 -13.17775 -13.13367 -12.96766 -12.83580 -12.73755 -12.42164 -12.34725 -12.02736 -11.45425 -11.29328 -10.93860 -10.70436 -10.68622 -10.57703 -10.22370 -10.01118 -9.69168 -0.50811 0.01610 1.09037 1.41317 1.47792 1.61558 1.74370 1.90206 2.02070 2.04299 2.31484 2.59510 2.76904 2.99584 3.25787 3.36566 3.65182 3.70499 3.99644 4.11058 4.17797 4.28598 4.44933 4.59346 4.72085 4.80154 4.82545 4.83776 4.87382 4.88220 4.89343 4.89735 4.90501 5.01600 5.07881 5.09578 5.27456 5.45976 5.60619 5.62157 5.67935 5.69727 6.48914 6.54448 7.13928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.101 2.899 3 C -0.464 4.464 4 C -0.475 4.475 5 C -0.432 4.432 6 C 0.119 3.881 7 N -0.710 5.710 8 C 0.552 3.448 9 O -0.580 6.580 10 C -0.153 4.153 11 C -0.047 4.047 12 C -0.147 4.147 13 C 0.103 3.897 14 F -0.127 7.127 15 C -0.163 4.163 16 C -0.078 4.078 17 O -0.548 6.548 18 Si 0.973 3.027 19 H -0.235 1.235 20 H -0.260 1.260 21 H -0.272 1.272 22 C -0.033 4.033 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.132 0.868 40 H 0.390 0.610 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 6.082 1.631 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.291 2.709 3 C -0.570 4.570 4 C -0.581 4.581 5 C -0.515 4.515 6 C -0.004 4.004 7 N -0.363 5.363 8 C 0.340 3.660 9 O -0.461 6.461 10 C -0.157 4.157 11 C -0.066 4.066 12 C -0.165 4.165 13 C 0.084 3.916 14 F -0.106 7.106 15 C -0.164 4.164 16 C -0.188 4.188 17 O -0.355 6.355 18 Si 0.796 3.204 19 H -0.158 1.158 20 H -0.184 1.184 21 H -0.198 1.198 22 C -0.052 4.052 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.191 0.809 38 H 0.191 0.809 39 H 0.149 0.851 40 H 0.240 0.760 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.769 5.135 1.718 6.597 hybrid contribution 0.080 0.176 -0.189 0.270 sum 3.848 5.311 1.529 6.735 Atomic orbital electron populations 1.26480 1.23240 1.04012 1.04385 0.77786 0.64270 0.64957 0.63911 1.26278 1.06598 1.19665 1.04499 1.26470 1.06576 1.08149 1.16862 1.26597 1.07660 0.99238 1.18041 1.21226 0.99242 0.92754 0.87129 1.46074 1.53034 1.10879 1.26292 1.18463 0.79743 0.82468 0.85338 1.90792 1.39832 1.67320 1.48125 1.20040 1.03445 0.95284 0.96887 1.21513 0.92818 1.01103 0.91128 1.21428 1.02712 0.92228 1.00131 1.18003 0.96896 0.92430 0.84296 1.91581 1.87063 1.80771 1.51168 1.20386 1.01047 0.98610 0.96353 1.24976 1.10346 0.91372 0.92100 1.86490 1.45571 1.81983 1.21499 0.85600 0.75197 0.77940 0.81704 1.15779 1.18417 1.19762 1.20927 0.95589 0.93096 0.95584 0.91082 0.91601 0.91969 0.90891 0.91599 0.90925 0.91935 0.91603 0.91032 0.88263 0.88192 0.91803 0.91917 0.74623 0.80939 0.80949 0.85061 0.76023 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.10 -9.03 12.19 68.60 0.84 -8.19 16 3 C -0.46 2.93 8.65 113.37 0.98 3.91 16 4 C -0.48 1.80 8.65 113.37 0.98 2.78 16 5 C -0.43 3.84 4.56 71.98 0.33 4.17 16 6 C 0.12 -0.29 5.05 86.38 0.44 0.14 16 7 N -0.71 1.73 5.51 -466.09 -2.57 -0.84 16 8 C 0.55 2.53 7.77 86.75 0.67 3.21 16 9 O -0.58 -7.87 16.34 -3.94 -0.06 -7.94 16 10 C -0.15 -0.16 5.87 -20.09 -0.12 -0.28 16 11 C -0.05 0.26 9.54 22.52 0.21 0.48 16 12 C -0.15 0.69 10.01 22.27 0.22 0.91 16 13 C 0.10 0.00 6.67 22.47 0.15 0.15 16 14 F -0.13 -0.23 12.82 44.97 0.58 0.35 16 15 C -0.16 -0.24 5.13 -19.86 -0.10 -0.34 16 16 C -0.08 -0.07 2.97 71.24 0.21 0.15 16 17 O -0.55 -1.27 11.64 -148.98 -1.73 -3.00 16 18 Si 0.97 0.99 26.09 68.60 1.79 2.78 16 19 H -0.23 -0.47 5.28 99.48 0.53 0.05 16 20 H -0.26 -0.54 7.11 99.48 0.71 0.17 16 21 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 22 C -0.03 -0.10 8.78 22.52 0.20 0.09 16 23 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 24 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 25 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 26 H 0.07 -0.49 7.96 -2.39 -0.02 -0.50 16 27 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 28 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 29 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 30 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 32 H 0.10 -1.09 7.96 -2.39 -0.02 -1.11 16 33 H 0.10 -1.12 7.96 -2.38 -0.02 -1.14 16 34 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 35 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 36 H 0.42 -3.96 6.50 -92.70 -0.60 -4.56 16 37 H 0.17 -2.31 6.40 -2.91 -0.02 -2.33 16 38 H 0.17 -1.72 8.06 -2.91 -0.02 -1.74 16 39 H 0.13 -0.08 7.96 -2.39 -0.02 -0.10 16 40 H 0.39 -1.48 8.42 -74.06 -0.62 -2.10 16 41 H 0.14 0.77 6.65 -2.91 -0.02 0.75 16 Total: 0.00 -18.39 343.21 4.38 -14.01 By element: Atomic # 1 Polarization: -15.64 SS G_CDS: 0.39 Total: -15.25 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 5.16 Total: 18.08 kcal Atomic # 7 Polarization: 1.73 SS G_CDS: -2.57 Total: -0.84 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.80 Total: -10.94 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.58 Total: 0.35 kcal Atomic # 14 Polarization: -8.04 SS G_CDS: 2.63 Total: -5.41 kcal Total: -18.39 4.38 -14.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.528 kcal (2) G-P(sol) polarization free energy of solvation -18.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds