Wall clock time and date at job start Mon Mar 8 2021 00:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86296 * 109.47140 * 2 1 4 4 C 1.86301 * 109.47141 * 239.99929 * 2 1 3 5 5 C 1.86302 * 109.47056 * 120.00086 * 2 1 3 6 6 C 1.52992 * 109.47299 * 60.00050 * 5 2 1 7 7 N 1.46503 * 109.47266 * 179.97438 * 6 5 2 8 8 C 1.34775 * 119.99923 * 179.97438 * 7 6 5 9 9 O 1.21630 * 120.00399 * 0.02562 * 8 7 6 10 10 C 1.47296 * 119.99837 * 180.02562 * 8 7 6 11 11 C 1.39873 * 120.04645 * 359.97438 * 10 8 7 12 12 C 1.36431 * 120.18539 * 180.02562 * 11 10 8 13 13 C 1.39915 * 120.28027 * 359.97438 * 12 11 10 14 14 C 1.47568 * 119.95805 * 180.02562 * 13 12 11 15 15 C 1.36108 * 125.94382 * 359.97438 * 14 13 12 16 16 C 1.40790 * 106.73570 * 179.97438 * 15 14 13 17 17 C 1.34837 * 107.04749 * 359.97438 * 16 15 14 18 18 C 1.50706 * 125.65282 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47109 * 300.00324 * 18 17 16 20 20 Si 1.86291 * 109.47184 * 180.02562 * 18 17 16 21 21 H 1.48498 * 109.47530 * 60.00091 * 20 18 17 22 22 H 1.48502 * 109.47109 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47372 * 300.00132 * 20 18 17 24 24 O 1.34226 * 108.69663 * 359.73386 * 17 16 15 25 25 C 1.39614 * 120.08760 * 359.97438 * 13 12 11 26 26 C 1.38271 * 119.81200 * 0.30337 * 25 13 12 27 27 O 1.35681 * 120.13623 * 179.72063 * 26 25 13 28 28 H 1.08997 * 109.47413 * 299.99739 * 1 2 3 29 29 H 1.09001 * 109.46851 * 60.00586 * 1 2 3 30 30 H 1.09002 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47436 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47487 * 300.00023 * 3 2 1 33 33 H 1.09007 * 109.47109 * 59.99490 * 3 2 1 34 34 H 1.08991 * 109.47314 * 299.99558 * 4 2 1 35 35 H 1.08997 * 109.46854 * 60.00364 * 4 2 1 36 36 H 1.09004 * 109.47173 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.46832 * 299.99914 * 5 2 1 38 38 H 1.09004 * 109.46883 * 180.02562 * 5 2 1 39 39 H 1.09007 * 109.47141 * 60.00428 * 6 5 2 40 40 H 1.08996 * 109.47321 * 300.00116 * 6 5 2 41 41 H 0.96996 * 120.00108 * 0.02562 * 7 6 5 42 42 H 1.07995 * 119.90763 * 0.04542 * 11 10 8 43 43 H 1.07996 * 119.85782 * 179.97438 * 12 11 10 44 44 H 1.08003 * 126.62873 * 0.02562 * 15 14 13 45 45 H 1.07999 * 126.47677 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.46772 * 60.00047 * 18 17 16 47 47 H 0.96701 * 113.99555 * 299.99820 * 19 18 17 48 48 H 1.08002 * 120.09007 * 180.02562 * 25 13 12 49 49 H 0.96705 * 114.00157 * 89.99434 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 7 2.4629 -3.0115 2.7170 8 6 2.1369 -4.3017 2.9305 9 8 1.4374 -4.8928 2.1301 10 6 2.6280 -4.9961 4.1331 11 6 3.4330 -4.3175 5.0540 12 6 3.8898 -4.9581 6.1686 13 6 3.5564 -6.2972 6.3992 14 6 4.0539 -6.9830 7.6074 15 6 4.8409 -6.4322 8.5717 16 6 5.0711 -7.4374 9.5303 17 6 4.4203 -8.5410 9.1098 18 6 4.3865 -9.8669 9.8253 19 8 5.7170 -10.3717 9.9560 20 14 3.3582 -11.0741 8.8477 21 1 3.9544 -11.2542 7.4996 22 1 3.3244 -12.3805 9.5530 23 1 1.9755 -10.5498 8.7113 24 8 3.8022 -8.2610 7.9517 25 6 2.7527 -6.9853 5.4882 26 6 2.2925 -6.3414 4.3544 27 8 1.5157 -7.0055 3.4619 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8899 33 1 2.1206 2.2703 0.8900 34 1 2.1208 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5741 -0.8779 -1.5214 37 1 2.1206 -0.3644 2.4111 38 1 3.5740 -0.8778 1.5213 39 1 2.3375 -2.8346 0.6312 40 1 0.8841 -2.3208 1.5211 41 1 3.0205 -2.5401 3.3555 42 1 3.6934 -3.2836 4.8823 43 1 4.5114 -4.4292 6.8759 44 1 5.2155 -5.4196 8.5971 45 1 5.6580 -7.3426 10.4319 46 1 3.9492 -9.7347 10.8150 47 1 6.1682 -10.5140 9.1126 48 1 2.4950 -8.0189 5.6664 49 1 0.5677 -6.9422 3.6419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:46:43 Heat of formation + Delta-G solvation = -114.654187 kcal Electronic energy + Delta-G solvation = -29117.887138 eV Core-core repulsion = 24942.237161 eV Total energy + Delta-G solvation = -4175.649977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.151 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.76106 -41.47078 -39.62767 -38.13908 -37.83018 -36.13409 -34.28893 -33.62555 -31.63030 -31.18977 -30.27225 -29.41570 -28.48999 -28.45877 -27.05103 -24.72017 -24.12146 -23.44136 -22.37468 -21.89198 -21.29599 -19.74250 -18.75356 -18.53513 -17.72569 -17.54689 -17.29183 -16.74231 -16.47673 -16.29366 -16.00144 -15.83825 -15.52188 -14.99485 -14.85166 -14.80826 -14.34436 -14.29130 -14.10909 -14.03683 -14.00559 -13.90394 -13.83162 -13.61989 -13.52375 -13.35360 -13.26410 -13.14318 -12.94105 -12.91388 -12.73305 -12.48531 -12.23272 -12.06058 -11.83433 -11.19636 -11.14171 -10.89911 -10.86403 -10.78820 -10.56605 -10.55628 -10.04218 -9.95897 -9.02147 -0.78946 0.09838 0.64347 0.97405 1.33866 1.38748 1.46916 1.55359 1.69337 1.78374 1.80107 1.87421 2.00706 2.27195 2.59583 2.65161 3.01036 3.19226 3.34430 3.52168 3.66955 3.84740 3.88918 3.93094 4.02774 4.12038 4.16154 4.30371 4.36821 4.55073 4.60771 4.65544 4.65910 4.66924 4.70644 4.71445 4.73123 4.75526 4.76618 4.82571 4.90799 4.98682 5.05371 5.11315 5.17875 5.37247 5.41021 5.42537 5.46482 5.51327 5.53258 5.93762 6.31982 6.50980 6.68632 7.26690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.025 2.975 3 C -0.451 4.451 4 C -0.455 4.455 5 C -0.434 4.434 6 C 0.129 3.871 7 N -0.727 5.727 8 C 0.554 3.446 9 O -0.520 6.520 10 C -0.165 4.165 11 C -0.065 4.065 12 C -0.116 4.116 13 C 0.029 3.971 14 C 0.023 3.977 15 C -0.177 4.177 16 C -0.171 4.171 17 C -0.048 4.048 18 C -0.040 4.040 19 O -0.528 6.528 20 Si 0.952 3.048 21 H -0.248 1.248 22 H -0.244 1.244 23 H -0.246 1.246 24 O -0.167 6.167 25 C -0.142 4.142 26 C 0.178 3.822 27 O -0.474 6.474 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.398 0.602 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.137 0.863 47 H 0.382 0.618 48 H 0.142 0.858 49 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 4.265 2.718 5.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.220 2.780 3 C -0.559 4.559 4 C -0.562 4.562 5 C -0.518 4.518 6 C 0.006 3.994 7 N -0.381 5.381 8 C 0.341 3.659 9 O -0.396 6.396 10 C -0.168 4.168 11 C -0.083 4.083 12 C -0.134 4.134 13 C 0.029 3.971 14 C -0.027 4.027 15 C -0.196 4.196 16 C -0.190 4.190 17 C -0.098 4.098 18 C -0.151 4.151 19 O -0.334 6.334 20 Si 0.772 3.228 21 H -0.171 1.171 22 H -0.167 1.167 23 H -0.169 1.169 24 O -0.064 6.064 25 C -0.160 4.160 26 C 0.131 3.869 27 O -0.286 6.286 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.234 0.766 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.174 0.826 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.230 0.770 48 H 0.160 0.840 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.425 2.929 1.854 3.493 hybrid contribution 0.452 0.904 0.391 1.084 sum 0.878 3.833 2.245 4.528 Atomic orbital electron populations 1.26191 1.20811 1.04648 1.04518 0.78958 0.66928 0.66534 0.65582 1.26130 1.06273 1.18886 1.04573 1.26195 1.06285 1.08289 1.15444 1.26582 1.06648 1.01288 1.17265 1.21079 0.99426 0.91242 0.87611 1.46125 1.54102 1.11794 1.26059 1.18014 0.80699 0.81677 0.85477 1.90844 1.37040 1.65733 1.45984 1.20539 1.04300 0.94475 0.97516 1.20826 0.95058 0.99749 0.92714 1.20699 1.01384 0.92816 0.98483 1.17756 0.96183 0.92776 0.90429 1.20324 1.02728 0.82615 0.97041 1.21915 1.01820 1.01307 0.94543 1.21569 1.03660 0.91779 1.02000 1.23057 1.00224 0.99312 0.87188 1.24361 0.91914 0.93177 1.05610 1.86574 1.26150 1.85354 1.35280 0.85593 0.79491 0.78613 0.79138 1.17061 1.16669 1.16912 1.83940 1.59195 1.28178 1.35068 1.21584 0.99966 1.01433 0.93047 1.18286 0.93039 0.88088 0.87461 1.84775 1.21468 1.72443 1.49868 0.91254 0.91113 0.91082 0.91229 0.91058 0.91239 0.91065 0.91120 0.91245 0.89768 0.89753 0.91095 0.91109 0.76612 0.84575 0.84322 0.82576 0.82499 0.84518 0.77045 0.84005 0.74262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.84 8.65 101.05 0.87 1.71 16 2 Si 1.03 -3.59 12.19 -169.99 -2.07 -5.66 16 3 C -0.45 1.09 8.65 101.05 0.87 1.96 16 4 C -0.45 0.76 8.65 101.05 0.87 1.63 16 5 C -0.43 1.37 4.56 37.15 0.17 1.54 16 6 C 0.13 -0.07 5.05 -4.04 -0.02 -0.09 16 7 N -0.73 0.07 5.50 -61.42 -0.34 -0.27 16 8 C 0.55 1.64 7.75 -12.58 -0.10 1.55 16 9 O -0.52 -3.41 15.14 -16.70 -0.25 -3.67 16 10 C -0.16 -0.26 5.89 -104.79 -0.62 -0.88 16 11 C -0.06 0.08 9.47 -39.62 -0.38 -0.29 16 12 C -0.12 0.13 9.48 -39.61 -0.38 -0.24 16 13 C 0.03 0.02 5.87 -104.95 -0.62 -0.59 16 14 C 0.02 0.03 7.02 -36.54 -0.26 -0.23 16 15 C -0.18 -0.02 10.25 -39.38 -0.40 -0.42 16 16 C -0.17 -0.06 10.76 -39.82 -0.43 -0.49 16 17 C -0.05 -0.03 6.22 -35.51 -0.22 -0.25 16 18 C -0.04 0.04 2.98 36.01 0.11 0.15 16 19 O -0.53 0.32 12.87 -35.23 -0.45 -0.13 16 20 Si 0.95 -0.48 27.38 -169.99 -4.65 -5.14 16 21 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 22 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 23 H -0.25 -0.16 7.11 56.52 0.40 0.25 16 24 O -0.17 -0.32 8.78 4.74 0.04 -0.28 16 25 C -0.14 -0.22 9.65 -39.06 -0.38 -0.60 16 26 C 0.18 0.42 6.71 -38.75 -0.26 0.16 16 27 O -0.47 -1.48 11.56 -40.70 -0.47 -1.95 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.17 7.96 -51.92 -0.41 -0.58 16 34 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 37 H 0.08 -0.32 7.96 -51.93 -0.41 -0.73 16 38 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 39 H 0.07 0.02 7.79 -51.92 -0.40 -0.38 16 40 H 0.07 -0.01 7.79 -51.93 -0.40 -0.41 16 41 H 0.40 -1.16 6.48 -40.82 -0.26 -1.42 16 42 H 0.14 -0.59 6.38 -52.49 -0.33 -0.93 16 43 H 0.14 -0.50 6.95 -52.49 -0.36 -0.86 16 44 H 0.16 -0.36 7.24 -52.48 -0.38 -0.74 16 45 H 0.16 -0.16 8.06 -52.49 -0.42 -0.58 16 46 H 0.14 -0.35 7.96 -51.93 -0.41 -0.76 16 47 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 48 H 0.14 0.16 7.90 -52.49 -0.41 -0.26 16 49 H 0.40 -0.27 9.06 45.56 0.41 0.14 16 LS Contribution 413.95 15.07 6.24 6.24 Total: 0.00 -9.78 413.95 -9.03 -18.82 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -5.92 Total: -12.58 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.15 Total: 4.62 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -0.34 Total: -0.27 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -1.14 Total: -6.03 kcal Atomic # 14 Polarization: -4.07 SS G_CDS: -6.73 Total: -10.80 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -9.78 -9.03 -18.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.838 kcal (2) G-P(sol) polarization free energy of solvation -9.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds