Wall clock time and date at job start Mon Mar 8 2021 00:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86296 * 109.47140 * 2 1 4 4 C 1.86301 * 109.47141 * 239.99929 * 2 1 3 5 5 C 1.86302 * 109.47056 * 120.00086 * 2 1 3 6 6 C 1.52992 * 109.47299 * 60.00050 * 5 2 1 7 7 N 1.46503 * 109.47266 * 179.97438 * 6 5 2 8 8 C 1.34775 * 119.99923 * 179.97438 * 7 6 5 9 9 O 1.21630 * 120.00399 * 0.02562 * 8 7 6 10 10 C 1.47296 * 119.99837 * 180.02562 * 8 7 6 11 11 C 1.39873 * 120.04645 * 359.97438 * 10 8 7 12 12 C 1.36431 * 120.18539 * 180.02562 * 11 10 8 13 13 C 1.39915 * 120.28027 * 359.97438 * 12 11 10 14 14 C 1.47568 * 119.95805 * 180.02562 * 13 12 11 15 15 C 1.36108 * 125.94382 * 359.97438 * 14 13 12 16 16 C 1.40790 * 106.73570 * 179.97438 * 15 14 13 17 17 C 1.34837 * 107.04749 * 359.97438 * 16 15 14 18 18 C 1.50706 * 125.65282 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.47109 * 300.00324 * 18 17 16 20 20 Si 1.86291 * 109.47184 * 180.02562 * 18 17 16 21 21 H 1.48498 * 109.47530 * 60.00091 * 20 18 17 22 22 H 1.48502 * 109.47109 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47372 * 300.00132 * 20 18 17 24 24 O 1.34226 * 108.69663 * 359.73386 * 17 16 15 25 25 C 1.39614 * 120.08760 * 359.97438 * 13 12 11 26 26 C 1.38271 * 119.81200 * 0.30337 * 25 13 12 27 27 O 1.35681 * 120.13623 * 179.72063 * 26 25 13 28 28 H 1.08997 * 109.47413 * 299.99739 * 1 2 3 29 29 H 1.09001 * 109.46851 * 60.00586 * 1 2 3 30 30 H 1.09002 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47436 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47487 * 300.00023 * 3 2 1 33 33 H 1.09007 * 109.47109 * 59.99490 * 3 2 1 34 34 H 1.08991 * 109.47314 * 299.99558 * 4 2 1 35 35 H 1.08997 * 109.46854 * 60.00364 * 4 2 1 36 36 H 1.09004 * 109.47173 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.46832 * 299.99914 * 5 2 1 38 38 H 1.09004 * 109.46883 * 180.02562 * 5 2 1 39 39 H 1.09007 * 109.47141 * 60.00428 * 6 5 2 40 40 H 1.08996 * 109.47321 * 300.00116 * 6 5 2 41 41 H 0.96996 * 120.00108 * 0.02562 * 7 6 5 42 42 H 1.07995 * 119.90763 * 0.04542 * 11 10 8 43 43 H 1.07996 * 119.85782 * 179.97438 * 12 11 10 44 44 H 1.08003 * 126.62873 * 0.02562 * 15 14 13 45 45 H 1.07999 * 126.47677 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.46772 * 60.00047 * 18 17 16 47 47 H 0.96701 * 113.99555 * 299.99820 * 19 18 17 48 48 H 1.08002 * 120.09007 * 180.02562 * 25 13 12 49 49 H 0.96705 * 114.00157 * 89.99434 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 7 2.4629 -3.0115 2.7170 8 6 2.1369 -4.3017 2.9305 9 8 1.4374 -4.8928 2.1301 10 6 2.6280 -4.9961 4.1331 11 6 3.4330 -4.3175 5.0540 12 6 3.8898 -4.9581 6.1686 13 6 3.5564 -6.2972 6.3992 14 6 4.0539 -6.9830 7.6074 15 6 4.8409 -6.4322 8.5717 16 6 5.0711 -7.4374 9.5303 17 6 4.4203 -8.5410 9.1098 18 6 4.3865 -9.8669 9.8253 19 8 5.7170 -10.3717 9.9560 20 14 3.3582 -11.0741 8.8477 21 1 3.9544 -11.2542 7.4996 22 1 3.3244 -12.3805 9.5530 23 1 1.9755 -10.5498 8.7113 24 8 3.8022 -8.2610 7.9517 25 6 2.7527 -6.9853 5.4882 26 6 2.2925 -6.3414 4.3544 27 8 1.5157 -7.0055 3.4619 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8899 33 1 2.1206 2.2703 0.8900 34 1 2.1208 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5741 -0.8779 -1.5214 37 1 2.1206 -0.3644 2.4111 38 1 3.5740 -0.8778 1.5213 39 1 2.3375 -2.8346 0.6312 40 1 0.8841 -2.3208 1.5211 41 1 3.0205 -2.5401 3.3555 42 1 3.6934 -3.2836 4.8823 43 1 4.5114 -4.4292 6.8759 44 1 5.2155 -5.4196 8.5971 45 1 5.6580 -7.3426 10.4319 46 1 3.9492 -9.7347 10.8150 47 1 6.1682 -10.5140 9.1126 48 1 2.4950 -8.0189 5.6664 49 1 0.5677 -6.9422 3.6419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:46:42 Heat of formation + Delta-G solvation = -112.504886 kcal Electronic energy + Delta-G solvation = -29117.793937 eV Core-core repulsion = 24942.237161 eV Total energy + Delta-G solvation = -4175.556777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.151 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.76132 -41.55369 -39.73506 -38.12438 -37.85721 -36.23114 -34.29201 -33.62159 -31.60728 -31.18078 -30.22744 -29.25064 -28.31099 -28.29066 -27.02752 -24.70367 -24.10324 -23.36572 -22.38049 -21.95226 -21.33165 -19.77875 -18.77263 -18.54930 -17.73608 -17.56060 -17.34225 -16.78198 -16.49074 -16.33816 -16.02239 -15.77460 -15.57078 -14.99903 -14.89327 -14.73921 -14.33532 -14.14850 -13.99081 -13.91822 -13.87195 -13.84297 -13.72058 -13.61415 -13.53076 -13.18103 -13.14738 -12.97648 -12.85748 -12.82222 -12.69843 -12.35451 -12.30713 -12.08813 -11.93721 -11.20491 -11.14316 -10.77378 -10.71100 -10.69753 -10.54411 -10.53903 -10.10173 -9.98376 -9.01944 -0.81531 0.10844 0.62999 1.01660 1.34250 1.37780 1.46794 1.71950 1.74347 1.85820 1.92043 2.00904 2.03979 2.32443 2.62149 2.76344 2.99218 3.28500 3.41394 3.58677 3.69813 3.87994 3.97347 3.99741 4.15730 4.21089 4.27466 4.35904 4.45613 4.61799 4.68568 4.70366 4.79390 4.81164 4.82567 4.85972 4.86728 4.89110 4.89995 4.90443 5.03843 5.06999 5.07887 5.18349 5.28328 5.43737 5.46665 5.51981 5.60002 5.66462 5.69274 5.95672 6.51550 6.52365 6.65549 7.18377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.100 2.900 3 C -0.462 4.462 4 C -0.477 4.477 5 C -0.432 4.432 6 C 0.121 3.879 7 N -0.712 5.712 8 C 0.549 3.451 9 O -0.568 6.568 10 C -0.180 4.180 11 C -0.051 4.051 12 C -0.108 4.108 13 C 0.025 3.975 14 C -0.001 4.001 15 C -0.169 4.169 16 C -0.178 4.178 17 C -0.057 4.057 18 C -0.030 4.030 19 O -0.537 6.537 20 Si 0.979 3.021 21 H -0.268 1.268 22 H -0.251 1.251 23 H -0.266 1.266 24 O -0.186 6.186 25 C -0.157 4.157 26 C 0.159 3.841 27 O -0.496 6.496 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.414 0.586 42 H 0.174 0.826 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.172 0.828 46 H 0.156 0.844 47 H 0.393 0.607 48 H 0.133 0.867 49 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 6.455 4.582 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.290 2.710 3 C -0.569 4.569 4 C -0.582 4.582 5 C -0.515 4.515 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.337 3.663 9 O -0.448 6.448 10 C -0.184 4.184 11 C -0.069 4.069 12 C -0.126 4.126 13 C 0.024 3.976 14 C -0.050 4.050 15 C -0.187 4.187 16 C -0.197 4.197 17 C -0.107 4.107 18 C -0.141 4.141 19 O -0.344 6.344 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.174 1.174 23 H -0.191 1.191 24 O -0.084 6.084 25 C -0.175 4.175 26 C 0.112 3.888 27 O -0.309 6.309 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.253 0.747 42 H 0.191 0.809 43 H 0.190 0.810 44 H 0.201 0.799 45 H 0.189 0.811 46 H 0.173 0.827 47 H 0.243 0.757 48 H 0.151 0.849 49 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.202 5.142 3.715 6.715 hybrid contribution -0.101 0.202 -0.206 0.306 sum 2.101 5.344 3.509 6.730 Atomic orbital electron populations 1.26464 1.23102 1.03991 1.04458 0.77799 0.64382 0.65036 0.63776 1.26256 1.06593 1.19471 1.04576 1.26493 1.06548 1.08092 1.17054 1.26603 1.07595 0.99177 1.18139 1.21187 0.99183 0.92741 0.87057 1.46068 1.53369 1.10841 1.26294 1.18319 0.80181 0.82404 0.85437 1.90813 1.39374 1.66955 1.47667 1.20587 1.05603 0.94271 0.97944 1.21198 0.93158 1.01092 0.91458 1.21068 1.00868 0.91854 0.98815 1.17978 0.95836 0.93732 0.90047 1.20591 1.03870 0.82689 0.97813 1.22274 1.00596 1.02360 0.93506 1.21840 1.03624 0.91639 1.02562 1.23405 1.00225 1.00130 0.86967 1.24315 0.91671 0.92043 1.06076 1.86547 1.26173 1.85266 1.36419 0.85204 0.78242 0.78296 0.77995 1.19199 1.17432 1.19062 1.83933 1.59809 1.28896 1.35750 1.21548 1.01101 1.01343 0.93544 1.18502 0.93612 0.88872 0.87774 1.84727 1.22487 1.72966 1.50720 0.90957 0.91550 0.92038 0.90893 0.91544 0.90803 0.92127 0.91543 0.91112 0.88127 0.88324 0.92294 0.91899 0.74738 0.80896 0.81033 0.79856 0.81097 0.82711 0.75737 0.84894 0.73214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.53 8.65 113.37 0.98 2.51 16 2 Si 1.10 -8.24 12.19 68.60 0.84 -7.40 16 3 C -0.46 2.77 8.65 113.37 0.98 3.75 16 4 C -0.48 1.27 8.65 113.37 0.98 2.26 16 5 C -0.43 3.42 4.56 71.98 0.33 3.75 16 6 C 0.12 -0.12 5.05 86.38 0.44 0.31 16 7 N -0.71 0.54 5.50 -466.49 -2.57 -2.03 16 8 C 0.55 3.76 7.75 86.63 0.67 4.43 16 9 O -0.57 -8.85 15.14 16.87 0.26 -8.60 16 10 C -0.18 -0.65 5.89 -19.97 -0.12 -0.77 16 11 C -0.05 0.22 9.47 22.24 0.21 0.43 16 12 C -0.11 0.47 9.48 22.25 0.21 0.68 16 13 C 0.02 0.04 5.87 -20.08 -0.12 -0.08 16 14 C 0.00 0.00 7.02 24.24 0.17 0.17 16 15 C -0.17 0.25 10.25 22.40 0.23 0.48 16 16 C -0.18 0.11 10.76 22.11 0.24 0.35 16 17 C -0.06 -0.07 6.22 24.91 0.15 0.09 16 18 C -0.03 0.07 2.98 71.24 0.21 0.28 16 19 O -0.54 0.98 12.87 -148.98 -1.92 -0.94 16 20 Si 0.98 0.15 27.38 68.60 1.88 2.03 16 21 H -0.27 -0.84 7.11 99.48 0.71 -0.14 16 22 H -0.25 -0.28 7.11 99.48 0.71 0.43 16 23 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 24 O -0.19 -0.88 8.78 -5.97 -0.05 -0.93 16 25 C -0.16 -0.79 9.65 22.61 0.22 -0.57 16 26 C 0.16 1.09 6.71 22.81 0.15 1.24 16 27 O -0.50 -4.70 11.56 -69.00 -0.80 -5.49 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.06 -0.08 7.79 -2.39 -0.02 -0.09 16 31 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.48 7.96 -2.38 -0.02 -0.50 16 34 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 35 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.07 -0.22 7.96 -2.38 -0.02 -0.23 16 37 H 0.10 -1.05 7.96 -2.39 -0.02 -1.07 16 38 H 0.10 -0.99 7.96 -2.38 -0.02 -1.00 16 39 H 0.06 0.09 7.79 -2.38 -0.02 0.08 16 40 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 41 H 0.41 -3.32 6.48 -92.71 -0.60 -3.92 16 42 H 0.17 -2.15 6.38 -2.91 -0.02 -2.17 16 43 H 0.17 -1.91 6.95 -2.91 -0.02 -1.93 16 44 H 0.18 -1.47 7.24 -2.91 -0.02 -1.49 16 45 H 0.17 -0.67 8.06 -2.91 -0.02 -0.70 16 46 H 0.16 -0.94 7.96 -2.39 -0.02 -0.96 16 47 H 0.39 -2.90 8.70 -74.06 -0.64 -3.54 16 48 H 0.13 0.74 7.90 -2.91 -0.02 0.71 16 49 H 0.41 0.93 9.06 -74.05 -0.67 0.26 16 Total: 0.00 -25.36 413.95 3.41 -21.95 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: -0.17 Total: -17.88 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 5.94 Total: 19.29 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -2.57 Total: -2.03 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -2.51 Total: -15.96 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.71 Total: -5.37 kcal Total: -25.36 3.41 -21.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.555 kcal (2) G-P(sol) polarization free energy of solvation -25.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds