Wall clock time and date at job start Mon Mar 8 2021 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 109.47338 * 2 1 4 4 C 1.86303 * 109.47193 * 239.99804 * 2 1 3 5 5 C 1.86300 * 109.47008 * 120.00131 * 2 1 3 6 6 C 1.52998 * 109.47201 * 59.99729 * 5 2 1 7 7 N 1.46505 * 109.47219 * 180.02562 * 6 5 2 8 8 C 1.34769 * 120.00188 * 180.02562 * 7 6 5 9 9 O 1.21575 * 120.00156 * 359.97438 * 8 7 6 10 10 C 1.47716 * 120.00328 * 180.02562 * 8 7 6 11 11 C 1.39705 * 120.02683 * 179.97438 * 10 8 7 12 12 C 1.37673 * 119.97563 * 180.02562 * 11 10 8 13 13 C 1.39498 * 120.02186 * 0.02562 * 12 11 10 14 14 C 1.48286 * 119.97348 * 179.97438 * 13 12 11 15 15 C 1.39393 * 120.12559 * 359.72893 * 14 13 12 16 16 C 1.38006 * 119.87303 * 179.76321 * 15 14 13 17 17 C 1.38337 * 120.12047 * 0.48779 * 16 15 14 18 18 C 1.50706 * 119.87017 * 179.74528 * 17 16 15 19 19 O 1.42896 * 109.47049 * 245.02004 * 18 17 16 20 20 Si 1.86304 * 109.46712 * 5.01877 * 18 17 16 21 21 H 1.48500 * 109.47130 * 60.00390 * 20 18 17 22 22 H 1.48506 * 109.46696 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47465 * 299.99790 * 20 18 17 24 24 C 1.38333 * 120.25812 * 359.76226 * 17 16 15 25 25 C 1.37995 * 120.12986 * 0.02562 * 24 17 16 26 26 C 1.39506 * 120.05182 * 0.27547 * 13 12 11 27 27 C 1.37661 * 120.02240 * 359.44166 * 26 13 12 28 28 H 1.09005 * 109.47293 * 300.00147 * 1 2 3 29 29 H 1.09001 * 109.47092 * 59.99835 * 1 2 3 30 30 H 1.08995 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47279 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47163 * 300.00121 * 3 2 1 33 33 H 1.09005 * 109.47048 * 59.99703 * 3 2 1 34 34 H 1.08996 * 109.46721 * 300.00462 * 4 2 1 35 35 H 1.09001 * 109.46807 * 60.00186 * 4 2 1 36 36 H 1.09001 * 109.46976 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46866 * 299.99983 * 5 2 1 38 38 H 1.09001 * 109.47284 * 180.02562 * 5 2 1 39 39 H 1.08997 * 109.47161 * 60.00060 * 6 5 2 40 40 H 1.08993 * 109.47102 * 299.99743 * 6 5 2 41 41 H 0.97005 * 119.99813 * 0.02562 * 7 6 5 42 42 H 1.07995 * 120.01588 * 0.02562 * 11 10 8 43 43 H 1.07994 * 119.98900 * 179.97438 * 12 11 10 44 44 H 1.08005 * 120.06706 * 359.97226 * 15 14 13 45 45 H 1.07995 * 119.93767 * 180.23034 * 16 15 14 46 46 H 1.08991 * 109.46982 * 125.01820 * 18 17 16 47 47 H 0.96710 * 114.00103 * 59.99605 * 19 18 17 48 48 H 1.08001 * 119.93414 * 179.97438 * 24 17 16 49 49 H 1.07997 * 120.06890 * 179.97438 * 25 24 17 50 50 H 1.08000 * 119.98528 * 179.70733 * 26 13 12 51 51 H 1.07996 * 120.01318 * 180.28335 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5211 6 6 1.9739 -2.3207 1.5211 7 7 2.4617 -3.0112 2.7176 8 6 2.1364 -4.3016 2.9307 9 8 1.4378 -4.8926 2.1303 10 6 2.6278 -4.9976 4.1374 11 6 2.2905 -6.3351 4.3591 12 6 2.7486 -6.9827 5.4843 13 6 3.5488 -6.3036 6.4032 14 6 4.0412 -7.0020 7.6152 15 6 3.7012 -8.3348 7.8413 16 6 4.1664 -8.9811 8.9684 17 6 4.9602 -8.3057 9.8780 18 6 5.4603 -9.0154 11.1099 19 8 4.8884 -8.4122 12.2723 20 14 4.9675 -10.8105 11.0355 21 1 5.5618 -11.4373 9.8276 22 1 5.4598 -11.5096 12.2497 23 1 3.4876 -10.9153 10.9704 24 6 5.2965 -6.9815 9.6615 25 6 4.8408 -6.3263 8.5357 26 6 3.8811 -4.9662 6.1861 27 6 3.4290 -4.3185 5.0587 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5740 -0.8787 -1.5209 37 1 2.1206 -0.3644 2.4111 38 1 3.5740 -0.8779 1.5214 39 1 2.3372 -2.8346 0.6312 40 1 0.8840 -2.3207 1.5212 41 1 3.0189 -2.5396 3.3565 42 1 1.6706 -6.8609 3.6480 43 1 2.4876 -8.0164 5.6561 44 1 3.0778 -8.8617 7.1340 45 1 3.9067 -10.0148 9.1427 46 1 6.5465 -8.9385 11.1577 47 1 3.9222 -8.4441 12.2970 48 1 5.9162 -6.4592 10.3753 49 1 5.1036 -5.2923 8.3678 50 1 4.4969 -4.4402 6.9006 51 1 3.6901 -3.2845 4.8885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:50:14 Heat of formation + Delta-G solvation = -63.082803 kcal Electronic energy + Delta-G solvation = -27452.987984 eV Core-core repulsion = 23633.174935 eV Total energy + Delta-G solvation = -3819.813050 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.167 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42429 -40.66648 -39.25110 -37.51162 -36.38267 -34.10850 -32.68877 -31.86967 -31.49761 -30.36889 -29.25778 -28.31545 -28.29840 -26.96947 -24.72415 -24.65638 -23.35955 -22.57210 -22.24893 -21.27163 -19.27036 -18.46247 -17.76878 -17.32415 -16.94623 -16.59804 -16.31981 -16.03717 -15.90069 -15.54120 -15.12650 -15.08290 -15.05947 -14.92166 -14.54281 -14.24409 -14.15936 -14.07285 -13.92726 -13.84253 -13.73776 -13.57972 -13.21620 -13.18801 -13.13907 -12.98237 -12.84908 -12.71648 -12.57750 -12.37887 -12.19655 -12.02026 -11.90578 -11.50094 -11.36005 -10.77797 -10.71981 -10.70427 -10.59018 -10.38631 -10.13727 -10.07761 -9.96445 -9.08069 -0.69857 0.33477 0.38598 0.49837 1.17549 1.43937 1.51283 1.73561 1.78944 1.90771 2.00192 2.02766 2.32849 2.60197 2.75618 3.00200 3.40566 3.55835 3.60949 3.71015 3.80959 3.86572 3.98771 4.02537 4.15572 4.25182 4.25987 4.28388 4.35220 4.58480 4.63716 4.65998 4.70158 4.80983 4.82217 4.85534 4.86180 4.88217 4.88746 4.89507 4.91562 5.04676 5.07130 5.11999 5.19638 5.24095 5.26641 5.40327 5.45388 5.49466 5.59298 5.64149 5.66040 5.68453 5.78741 5.92764 6.48761 6.68937 7.13802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.098 2.902 3 C -0.462 4.462 4 C -0.475 4.475 5 C -0.433 4.433 6 C 0.119 3.881 7 N -0.711 5.711 8 C 0.549 3.451 9 O -0.585 6.585 10 C -0.153 4.153 11 C -0.072 4.072 12 C -0.124 4.124 13 C -0.023 4.023 14 C -0.061 4.061 15 C -0.109 4.109 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.078 4.078 19 O -0.551 6.551 20 Si 0.977 3.023 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.253 1.253 24 C -0.096 4.096 25 C -0.106 4.106 26 C -0.119 4.119 27 C -0.075 4.075 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.414 0.586 42 H 0.127 0.873 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.126 0.874 47 H 0.389 0.611 48 H 0.140 0.860 49 H 0.149 0.851 50 H 0.159 0.841 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 4.142 2.506 5.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.288 2.712 3 C -0.569 4.569 4 C -0.580 4.580 5 C -0.516 4.516 6 C -0.003 4.003 7 N -0.364 5.364 8 C 0.337 3.663 9 O -0.467 6.467 10 C -0.156 4.156 11 C -0.091 4.091 12 C -0.142 4.142 13 C -0.023 4.023 14 C -0.061 4.061 15 C -0.127 4.127 16 C -0.151 4.151 17 C -0.119 4.119 18 C -0.188 4.188 19 O -0.358 6.358 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.177 1.177 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.093 4.093 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.253 0.747 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.238 0.762 48 H 0.158 0.842 49 H 0.167 0.833 50 H 0.176 0.824 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.790 2.991 2.025 4.564 hybrid contribution -0.471 0.191 -0.188 0.542 sum 2.319 3.182 1.837 4.345 Atomic orbital electron populations 1.26463 1.23087 1.04003 1.04465 0.77827 0.64421 0.65099 0.63812 1.26254 1.06599 1.19451 1.04582 1.26463 1.06568 1.08102 1.16886 1.26624 1.07572 0.99215 1.18184 1.21218 0.99196 0.92815 0.87121 1.46097 1.53162 1.10976 1.26187 1.18653 0.79608 0.82421 0.85593 1.90763 1.40161 1.67392 1.48363 1.20043 1.03468 0.95687 0.96412 1.21253 0.97367 0.93474 0.96967 1.21374 0.98051 1.01169 0.93576 1.19153 0.95826 0.94091 0.93277 1.18931 0.98846 0.94022 0.94258 1.21429 0.99562 0.94045 0.97646 1.21163 0.98595 1.00265 0.95126 1.20548 0.98629 0.95733 0.96976 1.24986 1.02923 1.07149 0.83785 1.86494 1.26732 1.82178 1.40445 0.85279 0.80476 0.74485 0.79486 1.18326 1.20209 1.17661 1.21145 0.99255 0.93847 0.97158 1.21563 0.96455 1.00993 0.93357 1.21480 1.00481 0.93577 0.98082 1.21486 0.94525 1.00747 0.92564 0.91048 0.91449 0.92028 0.90879 0.91456 0.90880 0.92031 0.91449 0.91048 0.88351 0.88351 0.91962 0.91966 0.74737 0.85544 0.83663 0.84105 0.85164 0.85614 0.76226 0.84222 0.83310 0.82401 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.34 8.65 113.37 0.98 2.33 16 2 Si 1.10 -7.84 12.19 68.60 0.84 -7.00 16 3 C -0.46 2.61 8.65 113.37 0.98 3.59 16 4 C -0.47 1.34 8.65 113.37 0.98 2.32 16 5 C -0.43 3.11 4.56 71.98 0.33 3.44 16 6 C 0.12 -0.05 5.05 86.38 0.44 0.39 16 7 N -0.71 -0.16 5.51 -466.10 -2.57 -2.72 16 8 C 0.55 4.05 7.77 86.75 0.67 4.72 16 9 O -0.59 -9.43 16.33 -3.95 -0.06 -9.50 16 10 C -0.15 -0.58 5.88 -20.06 -0.12 -0.70 16 11 C -0.07 -0.35 9.58 22.49 0.22 -0.13 16 12 C -0.12 -0.19 9.41 22.44 0.21 0.02 16 13 C -0.02 -0.01 5.88 -19.99 -0.12 -0.12 16 14 C -0.06 0.00 5.88 -20.04 -0.12 -0.12 16 15 C -0.11 0.03 9.43 22.49 0.21 0.25 16 16 C -0.13 0.08 8.65 22.24 0.19 0.27 16 17 C -0.12 0.11 5.36 -19.82 -0.11 0.00 16 18 C -0.08 0.18 2.80 71.24 0.20 0.38 16 19 O -0.55 0.46 12.83 -148.98 -1.91 -1.45 16 20 Si 0.98 -1.73 25.13 68.60 1.72 -0.01 16 21 H -0.26 0.09 7.11 99.48 0.71 0.80 16 22 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 23 H -0.25 0.45 7.04 99.48 0.70 1.15 16 24 C -0.10 0.14 9.67 22.23 0.21 0.35 16 25 C -0.11 0.22 9.43 22.49 0.21 0.43 16 26 C -0.12 0.34 9.41 22.44 0.21 0.55 16 27 C -0.07 0.19 9.52 22.49 0.21 0.40 16 28 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 31 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 34 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.10 -0.91 7.96 -2.38 -0.02 -0.93 16 38 H 0.10 -0.91 7.96 -2.39 -0.02 -0.93 16 39 H 0.06 0.10 7.79 -2.39 -0.02 0.08 16 40 H 0.06 0.10 7.79 -2.39 -0.02 0.08 16 41 H 0.41 -2.70 6.49 -92.70 -0.60 -3.30 16 42 H 0.13 0.83 7.64 -2.91 -0.02 0.81 16 43 H 0.15 -0.30 6.19 -2.91 -0.02 -0.32 16 44 H 0.14 -0.49 6.19 -2.91 -0.02 -0.51 16 45 H 0.13 -0.37 4.84 -2.91 -0.01 -0.38 16 46 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 47 H 0.39 -2.68 8.70 -74.05 -0.64 -3.32 16 48 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 49 H 0.15 -1.02 6.19 -2.91 -0.02 -1.03 16 50 H 0.16 -1.31 6.19 -2.91 -0.02 -1.33 16 51 H 0.16 -1.49 6.39 -2.91 -0.02 -1.51 16 Total: 0.00 -20.35 415.13 4.28 -16.08 By element: Atomic # 1 Polarization: -14.22 SS G_CDS: 0.45 Total: -13.76 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.80 Total: 18.37 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -2.57 Total: -2.72 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.98 Total: -10.95 kcal Atomic # 14 Polarization: -9.57 SS G_CDS: 2.56 Total: -7.01 kcal Total: -20.35 4.28 -16.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.005 kcal (2) G-P(sol) polarization free energy of solvation -20.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds