Wall clock time and date at job start Mon Mar 8 2021 00:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.47094 * 2 1 4 4 C 1.86295 * 109.47575 * 240.00052 * 2 1 3 5 5 C 1.86298 * 109.47175 * 119.99844 * 2 1 3 6 6 C 1.52999 * 109.47275 * 59.99886 * 5 2 1 7 7 N 1.46501 * 109.47497 * 180.02562 * 6 5 2 8 8 C 1.34770 * 120.00108 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99994 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99981 * 180.02562 * 8 7 6 11 11 C 1.50706 * 109.47287 * 179.97438 * 10 8 7 12 12 C 1.38272 * 119.93336 * 89.99531 * 11 10 8 13 13 C 1.38123 * 120.06996 * 179.97438 * 12 11 10 14 14 C 1.38828 * 119.93049 * 0.02562 * 13 12 11 15 15 N 1.40193 * 120.06709 * 179.97438 * 14 13 12 16 16 C 1.36575 * 125.67166 * 310.15339 * 15 14 13 17 17 C 1.34851 * 108.20120 * 180.29586 * 16 15 14 18 18 C 1.40938 * 107.46556 * 359.74089 * 17 16 15 19 19 C 1.34852 * 107.47452 * 0.02562 * 18 17 16 20 20 C 1.50699 * 125.90323 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47158 * 150.01978 * 20 19 18 22 22 Si 1.86300 * 109.46944 * 30.02499 * 20 19 18 23 23 H 1.48503 * 109.46942 * 180.02562 * 22 20 19 24 24 H 1.48503 * 109.47276 * 299.99703 * 22 20 19 25 25 H 1.48494 * 109.47372 * 59.99692 * 22 20 19 26 26 C 1.38830 * 119.86826 * 0.25407 * 14 13 12 27 27 C 1.38125 * 119.93262 * 359.49204 * 26 14 13 28 28 H 1.08997 * 109.46844 * 300.00176 * 1 2 3 29 29 H 1.08999 * 109.46539 * 60.00166 * 1 2 3 30 30 H 1.08998 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47342 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47366 * 300.00157 * 3 2 1 33 33 H 1.09009 * 109.47262 * 59.99816 * 3 2 1 34 34 H 1.09003 * 109.46795 * 300.00066 * 4 2 1 35 35 H 1.09002 * 109.47166 * 59.99792 * 4 2 1 36 36 H 1.08995 * 109.47755 * 180.02562 * 4 2 1 37 37 H 1.09009 * 109.47002 * 300.00075 * 5 2 1 38 38 H 1.08994 * 109.47334 * 180.02562 * 5 2 1 39 39 H 1.08999 * 109.46801 * 60.00224 * 6 5 2 40 40 H 1.09004 * 109.47361 * 300.00450 * 6 5 2 41 41 H 0.97003 * 119.99371 * 0.02562 * 7 6 5 42 42 H 1.08999 * 109.47296 * 59.99640 * 10 8 7 43 43 H 1.09005 * 109.46754 * 299.99304 * 10 8 7 44 44 H 1.08005 * 119.96931 * 359.96256 * 12 11 10 45 45 H 1.07991 * 120.03933 * 180.02562 * 13 12 11 46 46 H 1.08002 * 125.89554 * 0.04077 * 16 15 14 47 47 H 1.07991 * 126.26351 * 179.73728 * 17 16 15 48 48 H 1.08001 * 126.26434 * 180.02562 * 18 17 16 49 49 H 1.09000 * 109.47247 * 270.02431 * 20 19 18 50 50 H 0.96698 * 114.00355 * 300.00487 * 21 20 19 51 51 H 1.07995 * 120.03760 * 179.71871 * 26 14 13 52 52 H 1.08006 * 119.96975 * 180.25331 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5212 7 7 2.4619 -3.0111 2.7177 8 6 2.1366 -4.3015 2.9308 9 8 1.4396 -4.8910 2.1323 10 6 2.6379 -5.0115 4.1619 11 6 2.1357 -6.4324 4.1619 12 6 2.8846 -7.4290 3.5636 13 6 2.4272 -8.7323 3.5624 14 6 1.2139 -9.0411 4.1623 15 7 0.7467 -10.3629 4.1623 16 6 0.6665 -11.1793 3.0704 17 6 0.1641 -12.3660 3.4676 18 6 -0.0695 -12.2833 4.8551 19 6 0.2982 -11.0490 5.2548 20 6 0.2228 -10.5169 6.6627 21 8 1.2578 -9.5524 6.8635 22 14 0.4391 -11.9200 7.8691 23 1 0.3642 -11.3958 9.2565 24 1 -0.6365 -12.9225 7.6606 25 1 1.7613 -12.5602 7.6520 26 6 0.4614 -8.0375 4.7571 27 6 0.9266 -6.7369 4.7597 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8899 33 1 2.1206 2.2703 0.8900 34 1 2.1208 -1.9059 -1.5210 35 1 2.1208 -0.3644 -2.4111 36 1 3.5741 -0.8786 -1.5209 37 1 2.1207 -0.3643 2.4112 38 1 3.5740 -0.8778 1.5214 39 1 2.3374 -2.8345 0.6313 40 1 0.8840 -2.3207 1.5212 41 1 3.0190 -2.5394 3.3565 42 1 2.2735 -4.4977 5.0514 43 1 3.7280 -5.0111 4.1629 44 1 3.8281 -7.1880 3.0965 45 1 3.0127 -9.5102 3.0954 46 1 0.9519 -10.9180 2.0621 47 1 -0.0248 -13.2227 2.8379 48 1 -0.4697 -13.0654 5.4833 49 1 -0.7477 -10.0470 6.8221 50 1 2.1507 -9.9016 6.7378 51 1 -0.4849 -8.2739 5.2206 52 1 0.3436 -5.9563 5.2259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13287746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:51:57 Heat of formation + Delta-G solvation = -33.155238 kcal Electronic energy + Delta-G solvation = -29180.409298 eV Core-core repulsion = 25269.156616 eV Total energy + Delta-G solvation = -3911.252682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.72147 -40.95979 -39.60724 -37.70657 -36.23520 -34.83921 -32.31029 -32.11525 -31.08971 -30.89865 -29.30779 -28.32708 -28.30594 -27.64243 -26.06173 -23.95757 -23.90199 -22.88966 -21.47663 -21.39035 -20.63275 -19.28201 -17.98569 -17.63115 -17.24720 -17.02640 -16.50481 -16.19904 -16.02230 -15.82315 -15.59371 -15.16283 -14.87527 -14.65936 -14.56798 -14.41421 -14.34215 -14.18277 -14.05803 -13.91331 -13.85290 -13.74155 -13.35327 -13.21180 -13.19052 -13.17738 -12.99191 -12.95080 -12.77708 -12.56926 -12.36216 -12.31658 -12.10820 -11.96780 -11.87202 -11.24754 -10.74471 -10.72135 -10.71083 -10.56789 -10.27199 -10.02606 -9.93178 -9.14853 -9.06819 0.01527 0.39611 0.98135 1.32674 1.50561 1.54244 1.68064 1.78944 1.85545 1.93591 1.99607 2.02852 2.08165 2.39182 2.70840 2.87548 3.36688 3.65764 3.68601 3.79398 3.92047 4.04577 4.12875 4.22463 4.24339 4.29004 4.35986 4.47628 4.50917 4.55298 4.62662 4.66868 4.71485 4.79550 4.81188 4.84337 4.85176 4.86033 4.88194 4.88818 4.99979 5.07852 5.17236 5.21060 5.24473 5.32599 5.37059 5.53966 5.54433 5.58544 5.64739 5.67754 5.82362 5.90436 6.16333 6.48755 6.54213 6.63059 7.32254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.097 2.903 3 C -0.462 4.462 4 C -0.475 4.475 5 C -0.429 4.429 6 C 0.121 3.879 7 N -0.720 5.720 8 C 0.506 3.494 9 O -0.584 6.584 10 C -0.099 4.099 11 C -0.066 4.066 12 C -0.098 4.098 13 C -0.126 4.126 14 C 0.111 3.889 15 N -0.393 5.393 16 C -0.020 4.020 17 C -0.200 4.200 18 C -0.211 4.211 19 C -0.021 4.021 20 C -0.059 4.059 21 O -0.542 6.542 22 Si 1.015 2.985 23 H -0.265 1.265 24 H -0.253 1.253 25 H -0.265 1.265 26 C -0.093 4.093 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.417 0.583 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.175 0.825 47 H 0.154 0.846 48 H 0.152 0.848 49 H 0.124 0.876 50 H 0.381 0.619 51 H 0.119 0.881 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 5.256 2.594 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.287 2.713 3 C -0.569 4.569 4 C -0.580 4.580 5 C -0.513 4.513 6 C -0.002 4.002 7 N -0.373 5.373 8 C 0.294 3.706 9 O -0.464 6.464 10 C -0.138 4.138 11 C -0.067 4.067 12 C -0.117 4.117 13 C -0.145 4.145 14 C 0.022 3.978 15 N -0.066 5.066 16 C -0.148 4.148 17 C -0.224 4.224 18 C -0.235 4.235 19 C -0.131 4.131 20 C -0.168 4.168 21 O -0.348 6.348 22 Si 0.836 3.164 23 H -0.189 1.189 24 H -0.177 1.177 25 H -0.189 1.189 26 C -0.112 4.112 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.192 0.808 47 H 0.171 0.829 48 H 0.170 0.830 49 H 0.141 0.859 50 H 0.229 0.771 51 H 0.137 0.863 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.651 4.873 2.719 6.668 hybrid contribution 0.225 -0.098 -0.680 0.723 sum 3.876 4.775 2.039 6.479 Atomic orbital electron populations 1.26475 1.23280 1.03901 1.04398 0.77843 0.64293 0.65091 0.64052 1.26264 1.06600 1.19550 1.04521 1.26466 1.06579 1.08048 1.16903 1.26558 1.07476 0.99499 1.17793 1.21098 0.98823 0.92703 0.87610 1.46182 1.53649 1.11480 1.26006 1.21086 0.79659 0.82205 0.87686 1.90739 1.39738 1.67175 1.48788 1.20771 1.04538 0.91481 0.96986 1.19573 0.94740 0.95014 0.97385 1.21056 1.00718 0.91506 0.98391 1.21103 0.94198 0.98058 1.01121 1.17787 0.94798 0.82256 1.02999 1.41550 1.48741 1.08953 1.07393 1.22305 1.08458 0.91573 0.92419 1.21183 1.07158 0.98402 0.95679 1.21025 1.09154 0.96723 0.96623 1.21332 1.07993 0.93381 0.90406 1.24901 0.95230 1.02346 0.94358 1.86499 1.17680 1.37801 1.92788 0.84792 0.80854 0.74713 0.76018 1.18897 1.17704 1.18884 1.20893 0.99117 0.92180 0.99039 1.21027 0.95697 0.95806 0.99188 0.91065 0.91570 0.92129 0.90873 0.91558 0.90909 0.92104 0.91570 0.91011 0.88459 0.88395 0.92449 0.92557 0.74578 0.85180 0.84898 0.83833 0.84930 0.80822 0.82863 0.83025 0.85883 0.77053 0.86262 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.34 8.65 113.37 0.98 2.32 16 2 Si 1.10 -8.10 12.19 68.60 0.84 -7.27 16 3 C -0.46 2.65 8.65 113.37 0.98 3.63 16 4 C -0.47 1.42 8.65 113.37 0.98 2.40 16 5 C -0.43 3.45 4.56 71.98 0.33 3.77 16 6 C 0.12 -0.23 5.05 86.38 0.44 0.21 16 7 N -0.72 2.39 5.56 -463.06 -2.57 -0.18 16 8 C 0.51 1.01 7.82 87.66 0.69 1.70 16 9 O -0.58 -7.38 16.03 -3.04 -0.05 -7.42 16 10 C -0.10 0.46 5.83 29.10 0.17 0.62 16 11 C -0.07 -0.10 4.38 -19.85 -0.09 -0.19 16 12 C -0.10 -0.19 9.69 22.25 0.22 0.02 16 13 C -0.13 -0.50 9.66 22.38 0.22 -0.28 16 14 C 0.11 0.70 4.89 38.09 0.19 0.88 16 15 N -0.39 -2.75 2.87 -333.40 -0.96 -3.71 16 16 C -0.02 -0.13 11.12 83.18 0.92 0.80 16 17 C -0.20 -1.21 10.86 22.15 0.24 -0.97 16 18 C -0.21 -1.24 9.43 22.15 0.21 -1.03 16 19 C -0.02 -0.12 6.02 41.04 0.25 0.13 16 20 C -0.06 -0.09 2.28 71.24 0.16 0.07 16 21 O -0.54 -1.07 9.89 -148.98 -1.47 -2.55 16 22 Si 1.01 0.22 26.57 68.60 1.82 2.05 16 23 H -0.26 -0.52 7.11 99.48 0.71 0.19 16 24 H -0.25 -0.19 6.82 99.48 0.68 0.49 16 25 H -0.26 -0.59 7.11 99.48 0.71 0.12 16 26 C -0.09 -0.56 7.68 22.38 0.17 -0.39 16 27 C -0.10 -0.35 9.69 22.25 0.22 -0.13 16 28 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 29 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.06 -0.05 7.79 -2.39 -0.02 -0.06 16 31 H 0.07 -0.45 7.96 -2.39 -0.02 -0.46 16 32 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 33 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 34 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 37 H 0.10 -0.97 7.96 -2.38 -0.02 -0.99 16 38 H 0.10 -0.99 7.96 -2.39 -0.02 -1.01 16 39 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 40 H 0.06 0.04 7.79 -2.39 -0.02 0.03 16 41 H 0.42 -4.23 8.47 -92.71 -0.79 -5.02 16 42 H 0.13 -1.23 8.08 -2.39 -0.02 -1.25 16 43 H 0.13 -1.35 8.09 -2.38 -0.02 -1.37 16 44 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.13 0.26 8.06 -2.92 -0.02 0.23 16 46 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 47 H 0.15 0.37 8.06 -2.92 -0.02 0.35 16 48 H 0.15 0.43 6.70 -2.91 -0.02 0.41 16 49 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 50 H 0.38 -0.68 8.70 -74.06 -0.64 -1.32 16 51 H 0.12 0.73 7.67 -2.91 -0.02 0.71 16 52 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 Total: 0.00 -21.08 427.85 5.07 -16.01 By element: Atomic # 1 Polarization: -10.70 SS G_CDS: 0.20 Total: -10.49 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 7.26 Total: 13.56 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -3.53 Total: -3.89 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.52 Total: -9.97 kcal Atomic # 14 Polarization: -7.88 SS G_CDS: 2.66 Total: -5.22 kcal Total: -21.08 5.07 -16.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13287746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.144 kcal (2) G-P(sol) polarization free energy of solvation -21.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds