Wall clock time and date at job start Mon Mar 8 2021 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86306 * 109.47173 * 2 1 4 4 C 1.86302 * 109.47268 * 240.00033 * 2 1 3 5 5 C 1.86299 * 109.47163 * 120.00029 * 2 1 3 6 6 C 1.52999 * 109.47324 * 59.99797 * 5 2 1 7 7 N 1.46495 * 109.47467 * 180.02562 * 6 5 2 8 8 C 1.34772 * 120.00287 * 180.02562 * 7 6 5 9 9 O 1.21557 * 120.00310 * 359.97438 * 8 7 6 10 10 C 1.47845 * 120.00218 * 179.97438 * 8 7 6 11 11 C 1.39986 * 120.55758 * 179.97438 * 10 8 7 12 12 C 1.38398 * 118.28423 * 180.02562 * 11 10 8 13 13 C 1.50705 * 120.34879 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.46435 * 65.00176 * 13 12 11 15 15 Si 1.86298 * 109.47238 * 185.00282 * 13 12 11 16 16 H 1.48488 * 109.47231 * 60.00270 * 15 13 12 17 17 H 1.48505 * 109.46766 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46970 * 299.99884 * 15 13 12 19 19 C 1.38311 * 119.30542 * 0.02562 * 12 11 10 20 20 N 1.31956 * 121.08154 * 359.97438 * 19 12 11 21 21 C 1.31664 * 121.87842 * 359.97438 * 20 19 12 22 22 H 1.09004 * 109.46998 * 299.99956 * 1 2 3 23 23 H 1.09001 * 109.47010 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46765 * 179.97438 * 3 2 1 26 26 H 1.08991 * 109.47014 * 299.99602 * 3 2 1 27 27 H 1.08996 * 109.47271 * 60.00395 * 3 2 1 28 28 H 1.09007 * 109.46694 * 300.00349 * 4 2 1 29 29 H 1.09001 * 109.46991 * 59.99801 * 4 2 1 30 30 H 1.08995 * 109.46998 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47176 * 299.99906 * 5 2 1 32 32 H 1.09003 * 109.47533 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.46906 * 59.99943 * 6 5 2 34 34 H 1.09003 * 109.46759 * 300.00404 * 6 5 2 35 35 H 0.97004 * 119.99800 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.86134 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.47022 * 305.00400 * 13 12 11 38 38 H 0.96695 * 114.00323 * 60.00908 * 14 13 12 39 39 H 1.08000 * 119.45634 * 180.02562 * 19 12 11 40 40 H 1.08003 * 119.71519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5212 7 7 2.4618 -3.0112 2.7176 8 6 2.1365 -4.3016 2.9307 9 8 1.4380 -4.8925 2.1304 10 6 2.6293 -4.9985 4.1379 11 6 2.2981 -6.3385 4.3711 12 6 2.7845 -6.9445 5.5163 13 6 2.4563 -8.3850 5.8136 14 8 3.0452 -9.2230 4.8171 15 14 3.1317 -8.8429 7.4884 16 1 2.5198 -7.9721 8.5238 17 1 2.8088 -10.2626 7.7810 18 1 4.6053 -8.6594 7.4949 19 6 3.5740 -6.2139 6.3857 20 7 3.8700 -4.9517 6.1400 21 6 3.4323 -4.3316 5.0641 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.5740 1.7564 0.0005 26 1 2.1208 2.2703 -0.8900 27 1 2.1208 2.2703 0.8900 28 1 2.1206 -1.9059 -1.5211 29 1 2.1207 -0.3644 -2.4111 30 1 3.5740 -0.8786 -1.5209 31 1 2.1207 -0.3644 2.4111 32 1 3.5740 -0.8787 1.5210 33 1 2.3373 -2.8346 0.6312 34 1 0.8839 -2.3206 1.5212 35 1 3.0195 -2.5397 3.3561 36 1 1.6791 -6.8853 3.6753 37 1 1.3747 -8.5197 5.8088 38 1 4.0083 -9.1548 4.7648 39 1 3.9552 -6.6845 7.2799 40 1 3.6964 -3.2977 4.8974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_13287814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:52:12 Heat of formation + Delta-G solvation = -82.323361 kcal Electronic energy + Delta-G solvation = -19500.780460 eV Core-core repulsion = 16438.686966 eV Total energy + Delta-G solvation = -3062.093494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87152 -40.20334 -37.99001 -36.37491 -33.76083 -33.46344 -31.23412 -29.46315 -28.49913 -28.47194 -27.33000 -25.92995 -23.89110 -23.37864 -21.59609 -19.26336 -18.25665 -18.03246 -17.71367 -16.71265 -16.68603 -16.38179 -15.94960 -15.26981 -15.06759 -14.93786 -14.50620 -14.33574 -14.22920 -14.13220 -13.99753 -13.87351 -13.58777 -13.36446 -13.28337 -13.15311 -12.94323 -12.78120 -12.54600 -12.29517 -12.09207 -11.48874 -11.04311 -10.92122 -10.88335 -10.87791 -10.62638 -10.48535 -10.36693 -10.09381 -0.57827 -0.02279 0.97954 1.30784 1.38680 1.51690 1.74981 1.76643 1.78877 1.79894 2.18030 2.56491 2.64279 3.01348 3.28624 3.39718 3.58999 3.71781 3.73838 3.94844 4.08599 4.09551 4.20634 4.46576 4.56870 4.64951 4.65830 4.69628 4.70322 4.71702 4.74310 4.84004 4.86785 4.89398 5.08280 5.26760 5.35613 5.40875 5.49973 5.51821 6.37810 6.39559 6.61357 7.10538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.026 2.974 3 C -0.451 4.451 4 C -0.455 4.455 5 C -0.435 4.435 6 C 0.128 3.872 7 N -0.723 5.723 8 C 0.561 3.439 9 O -0.529 6.529 10 C -0.188 4.188 11 C 0.014 3.986 12 C -0.179 4.179 13 C -0.077 4.077 14 O -0.534 6.534 15 Si 0.944 3.056 16 H -0.246 1.246 17 H -0.246 1.246 18 H -0.247 1.247 19 C 0.119 3.881 20 N -0.478 5.478 21 C 0.139 3.861 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.378 0.622 39 H 0.157 0.843 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 2.768 1.239 3.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.221 2.779 3 C -0.559 4.559 4 C -0.562 4.562 5 C -0.519 4.519 6 C 0.005 3.995 7 N -0.376 5.376 8 C 0.347 3.653 9 O -0.406 6.406 10 C -0.193 4.193 11 C -0.012 4.012 12 C -0.182 4.182 13 C -0.188 4.188 14 O -0.339 6.339 15 Si 0.766 3.234 16 H -0.169 1.169 17 H -0.170 1.170 18 H -0.171 1.171 19 C -0.037 4.037 20 N -0.185 5.185 21 C -0.020 4.020 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.225 0.775 39 H 0.174 0.826 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.472 2.420 1.972 3.451 hybrid contribution 0.173 0.205 -0.568 0.628 sum 1.645 2.625 1.405 3.401 Atomic orbital electron populations 1.26196 1.20809 1.04654 1.04552 0.78943 0.66908 0.66552 0.65495 1.26132 1.06285 1.18888 1.04592 1.26196 1.06287 1.08265 1.15462 1.26597 1.06725 1.01152 1.17402 1.21133 0.99595 0.91352 0.87384 1.46115 1.53773 1.11611 1.26106 1.18047 0.80309 0.81826 0.85159 1.90820 1.37465 1.66060 1.46289 1.21088 1.03775 0.96391 0.98034 1.21645 0.92902 0.92118 0.94583 1.21404 1.01072 0.98756 0.96939 1.24963 1.04050 0.86227 1.03586 1.86563 1.25614 1.63846 1.57868 0.85748 0.80745 0.82012 0.74913 1.16905 1.16953 1.17060 1.22922 0.92683 0.90244 0.97880 1.67723 1.21584 1.09797 1.19439 1.23043 0.90971 0.99674 0.88348 0.91237 0.91094 0.91083 0.91220 0.91051 0.91222 0.91083 0.91095 0.91233 0.89655 0.89657 0.90910 0.90919 0.76441 0.82808 0.85829 0.77508 0.82599 0.82151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.92 8.65 101.05 0.87 1.80 16 2 Si 1.03 -3.86 12.19 -169.99 -2.07 -5.93 16 3 C -0.45 1.14 8.65 101.05 0.87 2.02 16 4 C -0.45 0.92 8.65 101.05 0.87 1.79 16 5 C -0.44 1.53 4.56 37.16 0.17 1.70 16 6 C 0.13 -0.14 5.05 -4.04 -0.02 -0.16 16 7 N -0.72 0.48 5.51 -61.25 -0.34 0.15 16 8 C 0.56 1.25 7.78 -12.33 -0.10 1.16 16 9 O -0.53 -3.15 16.42 5.32 0.09 -3.06 16 10 C -0.19 -0.20 5.89 -104.82 -0.62 -0.81 16 11 C 0.01 0.02 9.38 -38.87 -0.36 -0.35 16 12 C -0.18 0.02 5.35 -104.53 -0.56 -0.54 16 13 C -0.08 0.10 2.82 36.01 0.10 0.20 16 14 O -0.53 0.21 12.84 -35.23 -0.45 -0.25 16 15 Si 0.94 -1.70 25.16 -169.99 -4.28 -5.98 16 16 H -0.25 0.31 7.11 56.52 0.40 0.71 16 17 H -0.25 0.06 7.11 56.52 0.40 0.46 16 18 H -0.25 0.45 7.05 56.52 0.40 0.85 16 19 C 0.12 0.03 9.84 -17.47 -0.17 -0.14 16 20 N -0.48 -0.63 10.35 -12.91 -0.13 -0.76 16 21 C 0.14 -0.02 10.71 -17.13 -0.18 -0.20 16 22 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 25 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.11 7.79 -51.92 -0.40 -0.51 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.08 -0.35 7.96 -51.93 -0.41 -0.76 16 32 H 0.08 -0.35 7.96 -51.93 -0.41 -0.76 16 33 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 34 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 35 H 0.40 -1.35 6.54 -40.82 -0.27 -1.62 16 36 H 0.15 0.25 7.74 -52.49 -0.41 -0.16 16 37 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 38 H 0.38 -1.38 8.70 45.56 0.40 -0.98 16 39 H 0.16 -0.23 4.87 -52.49 -0.26 -0.49 16 40 H 0.16 -0.54 6.42 -52.48 -0.34 -0.87 16 LS Contribution 336.13 15.07 5.07 5.07 Total: 0.00 -7.76 336.13 -6.66 -14.42 By element: Atomic # 1 Polarization: -4.70 SS G_CDS: -5.42 Total: -10.12 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 0.88 Total: 6.46 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -0.47 Total: -0.61 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.37 Total: -3.31 kcal Atomic # 14 Polarization: -5.55 SS G_CDS: -6.35 Total: -11.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -7.76 -6.66 -14.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13287814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.898 kcal (2) G-P(sol) polarization free energy of solvation -7.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds