Wall clock time and date at job start Mon Mar 8 2021 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86306 * 109.47173 * 2 1 4 4 C 1.86302 * 109.47268 * 240.00033 * 2 1 3 5 5 C 1.86299 * 109.47163 * 120.00029 * 2 1 3 6 6 C 1.52999 * 109.47324 * 59.99797 * 5 2 1 7 7 N 1.46495 * 109.47467 * 180.02562 * 6 5 2 8 8 C 1.34772 * 120.00287 * 180.02562 * 7 6 5 9 9 O 1.21557 * 120.00310 * 359.97438 * 8 7 6 10 10 C 1.47845 * 120.00218 * 179.97438 * 8 7 6 11 11 C 1.39986 * 120.55758 * 179.97438 * 10 8 7 12 12 C 1.38398 * 118.28423 * 180.02562 * 11 10 8 13 13 C 1.50705 * 120.34879 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.46435 * 65.00176 * 13 12 11 15 15 Si 1.86298 * 109.47238 * 185.00282 * 13 12 11 16 16 H 1.48488 * 109.47231 * 60.00270 * 15 13 12 17 17 H 1.48505 * 109.46766 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46970 * 299.99884 * 15 13 12 19 19 C 1.38311 * 119.30542 * 0.02562 * 12 11 10 20 20 N 1.31956 * 121.08154 * 359.97438 * 19 12 11 21 21 C 1.31664 * 121.87842 * 359.97438 * 20 19 12 22 22 H 1.09004 * 109.46998 * 299.99956 * 1 2 3 23 23 H 1.09001 * 109.47010 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47453 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46765 * 179.97438 * 3 2 1 26 26 H 1.08991 * 109.47014 * 299.99602 * 3 2 1 27 27 H 1.08996 * 109.47271 * 60.00395 * 3 2 1 28 28 H 1.09007 * 109.46694 * 300.00349 * 4 2 1 29 29 H 1.09001 * 109.46991 * 59.99801 * 4 2 1 30 30 H 1.08995 * 109.46998 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47176 * 299.99906 * 5 2 1 32 32 H 1.09003 * 109.47533 * 179.97438 * 5 2 1 33 33 H 1.09004 * 109.46906 * 59.99943 * 6 5 2 34 34 H 1.09003 * 109.46759 * 300.00404 * 6 5 2 35 35 H 0.97004 * 119.99800 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.86134 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.47022 * 305.00400 * 13 12 11 38 38 H 0.96695 * 114.00323 * 60.00908 * 14 13 12 39 39 H 1.08000 * 119.45634 * 180.02562 * 19 12 11 40 40 H 1.08003 * 119.71519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5212 7 7 2.4618 -3.0112 2.7176 8 6 2.1365 -4.3016 2.9307 9 8 1.4380 -4.8925 2.1304 10 6 2.6293 -4.9985 4.1379 11 6 2.2981 -6.3385 4.3711 12 6 2.7845 -6.9445 5.5163 13 6 2.4563 -8.3850 5.8136 14 8 3.0452 -9.2230 4.8171 15 14 3.1317 -8.8429 7.4884 16 1 2.5198 -7.9721 8.5238 17 1 2.8088 -10.2626 7.7810 18 1 4.6053 -8.6594 7.4949 19 6 3.5740 -6.2139 6.3857 20 7 3.8700 -4.9517 6.1400 21 6 3.4323 -4.3316 5.0641 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.5740 1.7564 0.0005 26 1 2.1208 2.2703 -0.8900 27 1 2.1208 2.2703 0.8900 28 1 2.1206 -1.9059 -1.5211 29 1 2.1207 -0.3644 -2.4111 30 1 3.5740 -0.8786 -1.5209 31 1 2.1207 -0.3644 2.4111 32 1 3.5740 -0.8787 1.5210 33 1 2.3373 -2.8346 0.6312 34 1 0.8839 -2.3206 1.5212 35 1 3.0195 -2.5397 3.3561 36 1 1.6791 -6.8853 3.6753 37 1 1.3747 -8.5197 5.8088 38 1 4.0083 -9.1548 4.7648 39 1 3.9552 -6.6845 7.2799 40 1 3.6964 -3.2977 4.8974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13287814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:52:11 Heat of formation + Delta-G solvation = -80.753563 kcal Electronic energy + Delta-G solvation = -19500.712389 eV Core-core repulsion = 16438.686966 eV Total energy + Delta-G solvation = -3062.025422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90668 -40.30396 -37.93316 -36.43115 -33.79042 -33.46420 -31.14413 -29.27960 -28.30328 -28.29060 -27.27892 -25.93069 -23.88709 -23.27311 -21.66656 -19.26910 -18.22825 -18.02575 -17.71184 -16.73407 -16.70111 -16.31101 -15.92337 -15.23277 -15.04436 -14.90768 -14.52368 -14.26499 -14.15948 -13.93113 -13.82972 -13.72381 -13.54270 -13.18225 -13.14490 -12.97313 -12.78119 -12.72871 -12.38391 -12.16512 -12.03069 -11.58858 -11.09727 -10.76166 -10.70453 -10.69399 -10.58794 -10.49201 -10.36002 -10.09978 -0.60291 -0.04651 1.10333 1.45271 1.51434 1.64832 1.70887 1.91534 2.01515 2.03206 2.26227 2.61047 2.75333 3.08989 3.37192 3.47239 3.64062 3.70610 3.78487 4.06932 4.11892 4.26520 4.28813 4.56629 4.68571 4.82031 4.82674 4.83247 4.86737 4.87328 4.88694 4.89886 4.90909 5.06010 5.22055 5.29757 5.43728 5.60367 5.67312 5.69149 6.39916 6.60189 6.64529 7.05236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.102 2.898 3 C -0.464 4.464 4 C -0.475 4.475 5 C -0.434 4.434 6 C 0.119 3.881 7 N -0.708 5.708 8 C 0.558 3.442 9 O -0.577 6.577 10 C -0.196 4.196 11 C 0.001 3.999 12 C -0.175 4.175 13 C -0.080 4.080 14 O -0.551 6.551 15 Si 0.982 3.018 16 H -0.250 1.250 17 H -0.270 1.270 18 H -0.241 1.241 19 C 0.116 3.884 20 N -0.495 5.495 21 C 0.145 3.855 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.390 0.610 39 H 0.173 0.827 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.796 3.739 2.283 5.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.292 2.708 3 C -0.571 4.571 4 C -0.581 4.581 5 C -0.517 4.517 6 C -0.003 4.003 7 N -0.361 5.361 8 C 0.344 3.656 9 O -0.457 6.457 10 C -0.202 4.202 11 C -0.026 4.026 12 C -0.177 4.177 13 C -0.190 4.190 14 O -0.358 6.358 15 Si 0.804 3.196 16 H -0.174 1.174 17 H -0.194 1.194 18 H -0.165 1.165 19 C -0.040 4.040 20 N -0.203 5.203 21 C -0.014 4.014 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.240 0.760 39 H 0.189 0.811 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.544 3.430 3.008 5.224 hybrid contribution -0.171 -0.096 -0.931 0.951 sum 2.373 3.334 2.077 4.590 Atomic orbital electron populations 1.26471 1.23127 1.04048 1.04420 0.77769 0.64327 0.64925 0.63802 1.26281 1.06587 1.19691 1.04513 1.26471 1.06563 1.08155 1.16877 1.26626 1.07678 0.99217 1.18173 1.21259 0.99365 0.92758 0.86947 1.46086 1.52966 1.10717 1.26333 1.18284 0.79775 0.82495 0.85009 1.90792 1.39789 1.67245 1.47903 1.21073 1.04560 0.96434 0.98093 1.21685 0.93275 0.92548 0.95047 1.21460 1.00691 0.99223 0.96334 1.25110 1.04523 0.85419 1.03958 1.86530 1.26971 1.64014 1.58304 0.85214 0.80645 0.80075 0.73631 1.17395 1.19435 1.16467 1.23210 0.92336 0.90163 0.98299 1.67787 1.22213 1.10315 1.19998 1.23448 0.89826 1.00756 0.87347 0.91070 0.91547 0.91920 0.90931 0.91552 0.90935 0.91926 0.91548 0.91067 0.88233 0.88237 0.91687 0.91683 0.74681 0.84034 0.85472 0.76026 0.81056 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.68 8.65 113.37 0.98 2.66 16 2 Si 1.10 -8.70 12.19 68.60 0.84 -7.86 16 3 C -0.46 2.75 8.65 113.37 0.98 3.73 16 4 C -0.48 1.67 8.65 113.37 0.98 2.66 16 5 C -0.43 3.61 4.56 71.98 0.33 3.94 16 6 C 0.12 -0.25 5.05 86.38 0.44 0.19 16 7 N -0.71 1.17 5.51 -465.98 -2.57 -1.40 16 8 C 0.56 2.97 7.78 86.79 0.68 3.65 16 9 O -0.58 -8.04 16.42 -3.89 -0.06 -8.11 16 10 C -0.20 -0.50 5.89 -19.99 -0.12 -0.62 16 11 C 0.00 0.00 9.38 22.73 0.21 0.22 16 12 C -0.17 -0.01 5.35 -19.81 -0.11 -0.12 16 13 C -0.08 0.19 2.82 71.24 0.20 0.39 16 14 O -0.55 0.16 12.84 -148.98 -1.91 -1.75 16 15 Si 0.98 -3.86 25.16 68.60 1.73 -2.13 16 16 H -0.25 0.80 7.11 99.48 0.71 1.50 16 17 H -0.27 0.02 7.11 99.48 0.71 0.72 16 18 H -0.24 1.18 7.05 99.48 0.70 1.88 16 19 C 0.12 -0.01 9.84 84.69 0.83 0.82 16 20 N -0.50 -0.86 10.35 -194.76 -2.01 -2.87 16 21 C 0.14 -0.16 10.71 85.04 0.91 0.75 16 22 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 23 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 24 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 25 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.45 7.96 -2.39 -0.02 -0.46 16 28 H 0.06 -0.11 7.79 -2.38 -0.02 -0.13 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.10 -1.04 7.96 -2.39 -0.02 -1.06 16 32 H 0.10 -1.04 7.96 -2.39 -0.02 -1.06 16 33 H 0.06 -0.02 7.79 -2.39 -0.02 -0.03 16 34 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 35 H 0.41 -3.43 6.54 -92.71 -0.61 -4.03 16 36 H 0.14 0.79 7.74 -2.91 -0.02 0.76 16 37 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 38 H 0.39 -2.76 8.70 -74.06 -0.64 -3.41 16 39 H 0.17 -0.69 4.87 -2.91 -0.01 -0.71 16 40 H 0.19 -1.65 6.42 -2.91 -0.02 -1.66 16 Total: 0.00 -18.83 336.13 2.86 -15.96 By element: Atomic # 1 Polarization: -10.64 SS G_CDS: 0.54 Total: -10.09 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 6.32 Total: 18.26 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -4.58 Total: -4.28 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.98 Total: -9.86 kcal Atomic # 14 Polarization: -12.56 SS G_CDS: 2.56 Total: -10.00 kcal Total: -18.83 2.86 -15.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13287814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.794 kcal (2) G-P(sol) polarization free energy of solvation -18.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds