Wall clock time and date at job start Mon Mar 8 2021 00:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38503 * 119.84548 * 2 1 4 4 C 1.38105 * 120.38405 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.95541 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47079 * 255.00270 * 5 4 3 7 7 Si 1.86301 * 109.47149 * 14.99765 * 5 4 3 8 8 H 1.48506 * 109.47302 * 59.99966 * 7 5 4 9 9 H 1.48503 * 109.47334 * 300.00099 * 7 5 4 10 10 H 1.48500 * 109.47376 * 180.02562 * 7 5 4 11 11 C 1.38665 * 120.08894 * 0.29242 * 4 3 2 12 12 O 1.35649 * 120.14894 * 179.72775 * 11 4 3 13 13 C 1.40180 * 119.69370 * 359.43888 * 11 4 3 14 14 C 1.47541 * 120.18639 * 180.28883 * 13 11 4 15 15 O 1.21587 * 120.00012 * 0.25055 * 14 13 11 16 16 N 1.34776 * 119.99581 * 180.24988 * 14 13 11 17 17 C 1.46503 * 119.99806 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47384 * 180.02562 * 17 16 14 19 19 Si 1.86298 * 109.47326 * 180.02562 * 18 17 16 20 20 C 1.86294 * 109.47179 * 59.99876 * 19 18 17 21 21 C 1.86302 * 109.46890 * 180.02562 * 19 18 17 22 22 C 1.86300 * 109.46716 * 299.99753 * 19 18 17 23 23 C 1.37827 * 119.84915 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.46799 * 90.00319 * 1 2 3 25 25 H 1.09002 * 109.47209 * 209.99912 * 1 2 3 26 26 H 1.08994 * 109.47480 * 330.00330 * 1 2 3 27 27 H 1.07998 * 119.81053 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.47380 * 134.99667 * 5 4 3 29 29 H 0.96696 * 114.00435 * 59.99627 * 6 5 4 30 30 H 0.96700 * 114.00344 * 90.00233 * 12 11 4 31 31 H 0.97005 * 120.00215 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47055 * 300.00173 * 17 16 14 33 33 H 1.09001 * 109.46814 * 59.99977 * 17 16 14 34 34 H 1.09002 * 109.46914 * 300.00761 * 18 17 16 35 35 H 1.09001 * 109.46915 * 59.99726 * 18 17 16 36 36 H 1.08998 * 109.47215 * 60.00198 * 20 19 18 37 37 H 1.09002 * 109.47172 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47052 * 299.99980 * 20 19 18 39 39 H 1.09001 * 109.47521 * 59.99995 * 21 19 18 40 40 H 1.09002 * 109.46895 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47243 * 299.99643 * 21 19 18 42 42 H 1.09001 * 109.46827 * 60.00777 * 22 19 18 43 43 H 1.09002 * 109.46719 * 180.02562 * 22 19 18 44 44 H 1.08993 * 109.47613 * 299.99846 * 22 19 18 45 45 H 1.07997 * 120.05000 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2013 0.0000 4 6 3.5773 1.2143 0.0005 5 6 4.3175 2.5270 0.0011 6 8 4.8556 2.7710 -1.3000 7 14 3.1444 3.9012 0.4555 8 1 2.5851 3.6477 1.8076 9 1 2.0393 3.9565 -0.5349 10 1 3.8736 5.1948 0.4555 11 6 4.2837 0.0211 -0.0051 12 8 5.6402 0.0325 -0.0101 13 6 3.5897 -1.1968 0.0007 14 6 4.3305 -2.4728 0.0013 15 8 5.5463 -2.4699 0.0014 16 7 3.6593 -3.6415 0.0017 17 6 4.3948 -4.9086 0.0017 18 6 3.4033 -6.0739 0.0016 19 14 4.3386 -7.6851 0.0024 20 6 5.4093 -7.7808 1.5239 21 6 3.1312 -9.1039 0.0015 22 6 5.4104 -7.7815 -1.5183 23 6 2.1930 -1.1954 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5137 27 1 1.6507 2.1334 -0.0004 28 1 5.1286 2.4865 0.7281 29 1 4.1889 2.8197 -1.9986 30 1 6.0368 0.0335 0.8718 31 1 2.6892 -3.6438 0.0013 32 1 5.0213 -4.9650 -0.8884 33 1 5.0218 -4.9646 0.8915 34 1 2.7764 -6.0175 0.8915 35 1 2.7765 -6.0175 -0.8884 36 1 4.7822 -7.7244 2.4136 37 1 5.9562 -8.7237 1.5246 38 1 6.1156 -6.9507 1.5240 39 1 2.5051 -9.0477 -0.8890 40 1 3.6785 -10.0466 0.0015 41 1 2.5038 -9.0476 0.8910 42 1 6.1168 -6.9514 -1.5182 43 1 5.9573 -8.7244 -1.5181 44 1 4.7840 -7.7255 -2.4085 45 1 1.6514 -2.1298 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:52:56 Heat of formation + Delta-G solvation = -138.244138 kcal Electronic energy + Delta-G solvation = -23776.059461 eV Core-core repulsion = 20302.747160 eV Total energy + Delta-G solvation = -3473.312301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65864 -39.91071 -37.99030 -37.58708 -36.10249 -33.26348 -33.07101 -31.02885 -29.42715 -28.48202 -28.44804 -27.66394 -26.79435 -25.32468 -23.28233 -21.98215 -21.32924 -19.58543 -18.32179 -18.01175 -17.39710 -16.82506 -16.48246 -16.40461 -16.03765 -15.76412 -15.18238 -14.96512 -14.77883 -14.61747 -14.52398 -14.30341 -14.08916 -13.98345 -13.84223 -13.77412 -13.43039 -13.33901 -13.25837 -13.13434 -13.08716 -12.88720 -12.65852 -12.42803 -12.29275 -12.15440 -11.79041 -11.64240 -11.17263 -10.89031 -10.85383 -10.62777 -10.30775 -10.18294 -9.94923 -9.51954 -0.32468 0.05817 1.07323 1.33902 1.45362 1.56748 1.79350 1.80875 1.81955 1.85192 2.29789 2.60397 2.63417 3.19975 3.36449 3.52567 3.61754 3.67687 3.98444 4.06236 4.11733 4.13483 4.29062 4.44850 4.52543 4.56446 4.61821 4.66216 4.67644 4.70924 4.71734 4.72519 4.74233 4.77559 4.91377 4.92369 4.94563 5.09793 5.20164 5.29805 5.41787 5.46132 5.52391 5.54393 5.57692 6.54110 6.57888 6.80281 7.30491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.097 4.097 3 C -0.088 4.088 4 C -0.154 4.154 5 C -0.072 4.072 6 O -0.529 6.529 7 Si 0.948 3.052 8 H -0.248 1.248 9 H -0.251 1.251 10 H -0.250 1.250 11 C 0.193 3.807 12 O -0.466 6.466 13 C -0.164 4.164 14 C 0.555 3.445 15 O -0.518 6.518 16 N -0.728 5.728 17 C 0.129 3.871 18 C -0.434 4.434 19 Si 1.025 2.975 20 C -0.454 4.454 21 C -0.451 4.451 22 C -0.455 4.455 23 C -0.068 4.068 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.374 0.626 30 H 0.394 0.606 31 H 0.398 0.602 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -1.408 1.776 6.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.106 4.106 4 C -0.155 4.155 5 C -0.182 4.182 6 O -0.333 6.333 7 Si 0.771 3.229 8 H -0.172 1.172 9 H -0.175 1.175 10 H -0.174 1.174 11 C 0.146 3.854 12 O -0.276 6.276 13 C -0.168 4.168 14 C 0.342 3.658 15 O -0.395 6.395 16 N -0.382 5.382 17 C 0.007 3.993 18 C -0.518 4.518 19 Si 1.220 2.780 20 C -0.561 4.561 21 C -0.559 4.559 22 C -0.562 4.562 23 C -0.086 4.086 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.221 0.779 30 H 0.252 0.748 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.367 -0.743 1.738 5.690 hybrid contribution -0.733 -0.472 0.060 0.874 sum -6.101 -1.215 1.798 6.475 Atomic orbital electron populations 1.20837 0.90090 1.03441 1.02987 1.19774 0.96714 0.92296 1.00944 1.21133 0.92999 0.98506 0.97922 1.20696 0.93881 0.96044 1.04854 1.24866 1.05054 0.98452 0.89840 1.86594 1.36766 1.94141 1.15809 0.85740 0.77758 0.78274 0.81160 1.17165 1.17490 1.17386 1.18200 0.83997 0.89590 0.93643 1.84807 1.13934 1.95845 1.33049 1.20452 0.93948 0.93662 1.08705 1.18068 0.87360 0.83418 0.76961 1.90834 1.12963 1.87346 1.48328 1.46126 1.10310 1.05702 1.76018 1.21072 0.94463 0.81224 1.02569 1.26585 1.06790 1.12981 1.05410 0.78959 0.66512 0.65277 0.67260 1.26188 1.09964 1.04717 1.15281 1.26131 1.11301 1.13997 1.04427 1.26193 1.09996 1.04717 1.15294 1.21130 0.92202 0.98236 0.97077 0.90588 0.91002 0.91086 0.85089 0.86641 0.77942 0.74760 0.76673 0.91121 0.91136 0.89806 0.89787 0.91268 0.91111 0.91065 0.91237 0.91058 0.91247 0.91052 0.91121 0.91253 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.35 10.00 36.01 0.36 0.71 16 2 C -0.10 0.09 5.87 -104.67 -0.61 -0.53 16 3 C -0.09 0.03 8.30 -39.53 -0.33 -0.30 16 4 C -0.15 -0.14 5.27 -104.51 -0.55 -0.69 16 5 C -0.07 -0.01 2.37 36.01 0.09 0.07 16 6 O -0.53 -0.89 12.88 -35.23 -0.45 -1.34 16 7 Si 0.95 -0.87 25.49 -169.99 -4.33 -5.20 16 8 H -0.25 0.14 7.11 56.52 0.40 0.54 16 9 H -0.25 0.32 6.73 56.52 0.38 0.70 16 10 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 11 C 0.19 0.52 6.69 -38.69 -0.26 0.26 16 12 O -0.47 -1.76 10.91 -40.52 -0.44 -2.20 16 13 C -0.16 -0.34 5.89 -104.84 -0.62 -0.96 16 14 C 0.55 1.92 7.76 -12.47 -0.10 1.82 16 15 O -0.52 -3.65 15.16 -16.58 -0.25 -3.90 16 16 N -0.73 -0.27 5.51 -61.35 -0.34 -0.61 16 17 C 0.13 -0.02 5.05 -4.04 -0.02 -0.04 16 18 C -0.43 1.26 4.56 37.16 0.17 1.42 16 19 Si 1.02 -3.39 12.19 -169.99 -2.07 -5.47 16 20 C -0.45 0.76 8.65 101.05 0.87 1.64 16 21 C -0.45 1.02 8.65 101.05 0.87 1.90 16 22 C -0.45 0.68 8.65 101.05 0.87 1.55 16 23 C -0.07 0.04 9.18 -39.20 -0.36 -0.32 16 24 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 25 H 0.07 -0.28 8.08 -51.93 -0.42 -0.70 16 26 H 0.07 -0.25 8.08 -51.93 -0.42 -0.67 16 27 H 0.13 -0.25 4.86 -52.49 -0.26 -0.50 16 28 H 0.12 -0.07 7.83 -51.93 -0.41 -0.47 16 29 H 0.37 -0.63 8.70 45.56 0.40 -0.24 16 30 H 0.39 0.04 9.06 45.56 0.41 0.45 16 31 H 0.40 -0.92 6.50 -40.82 -0.27 -1.19 16 32 H 0.07 0.05 7.79 -51.93 -0.40 -0.36 16 33 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 34 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 35 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 45 H 0.13 -0.43 6.40 -52.49 -0.34 -0.76 16 LS Contribution 370.49 15.07 5.58 5.58 Total: 0.00 -8.97 370.49 -7.79 -16.75 By element: Atomic # 1 Polarization: -4.29 SS G_CDS: -5.87 Total: -10.16 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 0.39 Total: 6.55 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -0.34 Total: -0.61 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -1.15 Total: -7.45 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: -6.41 Total: -10.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -8.97 -7.79 -16.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.489 kcal (2) G-P(sol) polarization free energy of solvation -8.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds