Wall clock time and date at job start Mon Mar 8 2021 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39197 * 119.92386 * 59.73099 * 4 2 1 6 6 C 1.37631 * 120.06323 * 179.72086 * 5 4 2 7 7 C 1.39779 * 119.92919 * 0.55096 * 6 5 4 8 8 C 1.47530 * 120.06508 * 179.74755 * 7 6 5 9 9 O 1.21593 * 119.99456 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00308 * 359.97286 * 8 7 6 11 11 C 1.46502 * 120.00136 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46934 * 180.02562 * 11 10 8 13 13 Si 1.86305 * 109.46609 * 179.97438 * 12 11 10 14 14 C 1.86307 * 109.46975 * 60.00186 * 13 12 11 15 15 C 1.86301 * 109.46852 * 179.97438 * 13 12 11 16 16 C 1.86293 * 109.47399 * 300.00027 * 13 12 11 17 17 C 1.39804 * 119.86722 * 359.72153 * 7 6 5 18 18 C 1.37598 * 119.92674 * 0.02562 * 17 7 6 19 19 C 1.50703 * 119.96576 * 180.02562 * 18 17 7 20 20 O 1.42895 * 109.47116 * 104.97502 * 19 18 17 21 21 Si 1.86299 * 109.46911 * 344.97681 * 19 18 17 22 22 H 1.48503 * 109.47316 * 60.00116 * 21 19 18 23 23 H 1.48498 * 109.46900 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47237 * 300.00075 * 21 19 18 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 29 29 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 31 31 H 1.07996 * 119.97290 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.03783 * 180.27026 * 6 5 4 33 33 H 0.97002 * 119.99822 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.46802 * 300.00051 * 11 10 8 35 35 H 1.08996 * 109.47206 * 60.00143 * 11 10 8 36 36 H 1.08996 * 109.47258 * 299.99577 * 12 11 10 37 37 H 1.08996 * 109.47216 * 59.99954 * 12 11 10 38 38 H 1.09000 * 109.46739 * 59.99556 * 14 13 12 39 39 H 1.09003 * 109.46953 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.46831 * 299.99517 * 14 13 12 41 41 H 1.08996 * 109.47035 * 60.00204 * 15 13 12 42 42 H 1.08995 * 109.47315 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47042 * 300.00260 * 15 13 12 44 44 H 1.08999 * 109.47394 * 59.99878 * 16 13 12 45 45 H 1.09003 * 109.47108 * 180.02562 * 16 13 12 46 46 H 1.09006 * 109.47112 * 300.00168 * 16 13 12 47 47 H 1.07999 * 120.04358 * 180.02562 * 17 7 6 48 48 H 1.08997 * 109.46720 * 224.98369 * 19 18 17 49 49 H 0.96709 * 113.99789 * 60.00493 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 1.6484 -0.3447 -2.3773 6 6 2.1447 -1.0568 -3.4453 7 6 2.9603 -2.1700 -3.2227 8 6 3.4893 -2.9389 -4.3653 9 8 4.1991 -3.9067 -4.1702 10 7 3.1860 -2.5686 -5.6251 11 6 3.7109 -3.3325 -6.7597 12 6 3.2208 -2.7061 -8.0667 13 14 3.8891 -3.6771 -9.5095 14 6 3.2916 -5.4385 -9.4026 15 6 3.2917 -2.9149 -11.1010 16 6 5.7513 -3.6494 -9.4675 17 6 3.2741 -2.5529 -1.9153 18 6 2.7791 -1.8337 -0.8518 19 6 3.1172 -2.2454 0.5579 20 8 4.0862 -1.3445 1.0977 21 14 3.8126 -3.9737 0.5502 22 1 5.0407 -4.0095 -0.2840 23 1 4.1453 -4.3795 1.9394 24 1 2.8057 -4.9099 -0.0108 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.6461 1.8947 0.8901 29 1 3.0851 1.3422 0.0005 30 1 1.6460 1.8948 -0.8900 31 1 1.0143 0.5126 -2.5485 32 1 1.9006 -0.7587 -4.4542 33 1 2.6201 -1.7963 -5.7807 34 1 4.8005 -3.3163 -6.7355 35 1 3.3614 -4.3630 -6.6967 36 1 2.1313 -2.7219 -8.0911 37 1 3.5707 -1.6757 -8.1294 38 1 2.2020 -5.4546 -9.4271 39 1 3.6822 -6.0065 -10.2469 40 1 3.6408 -5.8847 -8.4714 41 1 3.6409 -1.8843 -11.1637 42 1 3.6822 -3.4832 -11.9451 43 1 2.2020 -2.9314 -11.1252 44 1 6.1005 -4.0956 -8.5364 45 1 6.1422 -4.2172 -10.3119 46 1 6.1009 -2.6188 -9.5300 47 1 3.9043 -3.4123 -1.7401 48 1 2.2158 -2.2192 1.1701 49 1 3.7913 -0.4241 1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:59:09 Heat of formation + Delta-G solvation = -81.792476 kcal Electronic energy + Delta-G solvation = -25562.766566 eV Core-core repulsion = 22034.083236 eV Total energy + Delta-G solvation = -3528.683330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.68204 -40.34140 -37.69084 -37.26686 -36.27741 -33.04961 -31.88181 -30.73638 -29.43450 -28.76045 -28.49264 -28.45945 -26.89963 -26.17609 -23.84112 -23.12100 -22.78053 -21.05738 -19.09467 -18.04951 -17.77173 -17.38982 -16.58669 -16.50997 -16.40493 -16.12298 -15.61763 -15.16378 -15.07376 -15.05038 -14.76942 -14.32478 -14.27754 -14.12391 -14.02177 -13.95064 -13.82662 -13.63617 -13.36176 -13.27884 -13.19875 -13.14591 -13.09738 -12.87675 -12.84801 -12.74211 -12.47635 -12.08084 -11.64223 -11.32830 -11.23965 -10.93804 -10.90001 -10.86602 -10.62803 -10.12517 -10.06836 -9.78917 -9.72195 -0.36494 0.15404 1.33338 1.54750 1.63542 1.70851 1.77749 1.77975 1.79992 2.12419 2.26508 2.58996 2.62810 2.69863 3.50720 3.64657 3.70945 3.91130 3.98300 4.01624 4.09594 4.11387 4.16874 4.18393 4.36986 4.38224 4.44405 4.59046 4.62616 4.65158 4.66449 4.70377 4.71452 4.72980 4.74030 4.75882 4.76887 4.80010 4.90029 5.01832 5.08359 5.15712 5.22411 5.39664 5.41560 5.50921 5.53079 5.53475 5.60711 6.13241 6.48779 6.69783 7.22201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.516 5.516 3 C 0.023 3.977 4 C 0.126 3.874 5 C -0.153 4.153 6 C -0.072 4.072 7 C -0.132 4.132 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.725 5.725 11 C 0.127 3.873 12 C -0.434 4.434 13 Si 1.025 2.975 14 C -0.454 4.454 15 C -0.451 4.451 16 C -0.455 4.455 17 C -0.057 4.057 18 C -0.098 4.098 19 C -0.075 4.075 20 O -0.535 6.535 21 Si 0.999 3.001 22 H -0.248 1.248 23 H -0.253 1.253 24 H -0.248 1.248 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.142 0.858 48 H 0.083 0.917 49 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 4.444 -2.514 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.237 5.237 3 C -0.123 4.123 4 C 0.031 3.969 5 C -0.173 4.173 6 C -0.092 4.092 7 C -0.135 4.135 8 C 0.342 3.658 9 O -0.411 6.411 10 N -0.378 5.378 11 C 0.005 3.995 12 C -0.518 4.518 13 Si 1.220 2.780 14 C -0.562 4.562 15 C -0.559 4.559 16 C -0.562 4.562 17 C -0.076 4.076 18 C -0.100 4.100 19 C -0.184 4.184 20 O -0.341 6.341 21 Si 0.819 3.181 22 H -0.172 1.172 23 H -0.177 1.177 24 H -0.171 1.171 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.160 0.840 48 H 0.101 0.899 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.055 2.173 -1.879 4.194 hybrid contribution -1.302 2.093 -1.010 2.664 sum -4.357 4.266 -2.890 6.748 Atomic orbital electron populations 1.22505 0.84987 1.03176 1.01438 1.59459 1.09249 1.14533 1.40488 1.22549 1.01089 0.86900 1.01810 1.18808 0.95194 0.93908 0.88978 1.21579 1.01862 1.01085 0.92801 1.21156 0.95265 0.93605 0.99159 1.19918 1.01958 0.97920 0.93704 1.18212 0.80458 0.84128 0.82977 1.90813 1.37333 1.27521 1.85384 1.46112 1.53050 1.33077 1.05528 1.21111 0.99236 0.95627 0.83542 1.26587 1.07002 1.09143 1.09055 0.78961 0.66918 0.66526 0.65609 1.26191 1.06128 1.19104 1.04747 1.26129 1.06125 1.07208 1.16396 1.26192 1.20769 1.04517 1.04708 1.21218 0.96611 0.98974 0.90788 1.20206 0.97888 0.95370 0.96515 1.25162 0.97532 1.05244 0.90445 1.86698 1.41459 1.21203 1.84738 0.84675 0.80604 0.71772 0.81043 1.17188 1.17736 1.17087 0.90794 0.94686 0.90291 0.90123 0.90747 0.94625 0.85256 0.85378 0.76504 0.90996 0.90992 0.89770 0.89770 0.91255 0.91102 0.91056 0.91241 0.91046 0.91245 0.91049 0.91101 0.91250 0.84012 0.89851 0.78493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 9.33 60.07 0.56 0.51 16 2 N -0.52 0.53 3.70 -186.86 -0.69 -0.16 16 3 C 0.02 -0.06 9.00 60.06 0.54 0.49 16 4 C 0.13 0.04 4.65 -83.86 -0.39 -0.35 16 5 C -0.15 0.11 8.57 -39.45 -0.34 -0.23 16 6 C -0.07 0.04 9.53 -39.23 -0.37 -0.33 16 7 C -0.13 -0.28 5.88 -104.95 -0.62 -0.90 16 8 C 0.55 1.90 7.76 -12.48 -0.10 1.81 16 9 O -0.53 -3.83 16.34 5.28 0.09 -3.75 16 10 N -0.72 -0.17 5.50 -61.35 -0.34 -0.51 16 11 C 0.13 -0.04 5.05 -4.04 -0.02 -0.06 16 12 C -0.43 1.31 4.56 37.16 0.17 1.48 16 13 Si 1.02 -3.49 12.19 -169.99 -2.07 -5.56 16 14 C -0.45 0.78 8.65 101.05 0.87 1.65 16 15 C -0.45 1.05 8.65 101.05 0.87 1.93 16 16 C -0.45 0.75 8.65 101.05 0.87 1.63 16 17 C -0.06 -0.17 8.19 -39.23 -0.32 -0.49 16 18 C -0.10 -0.18 5.28 -104.49 -0.55 -0.73 16 19 C -0.08 -0.12 2.30 36.01 0.08 -0.04 16 20 O -0.54 -1.24 12.65 -35.23 -0.45 -1.68 16 21 Si 1.00 2.27 25.74 -169.99 -4.38 -2.11 16 22 H -0.25 -0.92 6.73 56.52 0.38 -0.54 16 23 H -0.25 -0.73 7.11 56.52 0.40 -0.32 16 24 H -0.25 -0.53 7.11 56.52 0.40 -0.12 16 25 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 26 H 0.03 -0.09 7.08 -51.93 -0.37 -0.46 16 27 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 28 H 0.08 -0.26 8.14 -51.92 -0.42 -0.69 16 29 H 0.07 -0.17 7.52 -51.93 -0.39 -0.56 16 30 H 0.04 -0.09 7.46 -51.93 -0.39 -0.48 16 31 H 0.13 -0.31 7.01 -52.49 -0.37 -0.68 16 32 H 0.13 -0.44 6.39 -52.49 -0.34 -0.77 16 33 H 0.40 -1.01 6.49 -40.82 -0.26 -1.28 16 34 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 35 H 0.07 0.01 7.79 -51.93 -0.40 -0.39 16 36 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 37 H 0.08 -0.30 7.96 -51.93 -0.41 -0.71 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 44 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 45 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 47 H 0.14 0.56 4.46 -52.49 -0.23 0.32 16 48 H 0.08 0.04 7.78 -51.93 -0.40 -0.37 16 49 H 0.37 0.02 7.56 45.56 0.34 0.36 16 LS Contribution 392.13 15.07 5.91 5.91 Total: 0.00 -6.78 392.13 -8.49 -15.27 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: -7.83 Total: -13.76 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 1.27 Total: 6.35 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -1.03 Total: -0.67 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.36 Total: -5.43 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -6.45 Total: -7.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -6.78 -8.49 -15.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.523 kcal (2) G-P(sol) polarization free energy of solvation -6.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds