Wall clock time and date at job start Mon Mar 8 2021 00:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39197 * 119.92386 * 59.73099 * 4 2 1 6 6 C 1.37631 * 120.06323 * 179.72086 * 5 4 2 7 7 C 1.39779 * 119.92919 * 0.55096 * 6 5 4 8 8 C 1.47530 * 120.06508 * 179.74755 * 7 6 5 9 9 O 1.21593 * 119.99456 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00308 * 359.97286 * 8 7 6 11 11 C 1.46502 * 120.00136 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46934 * 180.02562 * 11 10 8 13 13 Si 1.86305 * 109.46609 * 179.97438 * 12 11 10 14 14 C 1.86307 * 109.46975 * 60.00186 * 13 12 11 15 15 C 1.86301 * 109.46852 * 179.97438 * 13 12 11 16 16 C 1.86293 * 109.47399 * 300.00027 * 13 12 11 17 17 C 1.39804 * 119.86722 * 359.72153 * 7 6 5 18 18 C 1.37598 * 119.92674 * 0.02562 * 17 7 6 19 19 C 1.50703 * 119.96576 * 180.02562 * 18 17 7 20 20 O 1.42895 * 109.47116 * 104.97502 * 19 18 17 21 21 Si 1.86299 * 109.46911 * 344.97681 * 19 18 17 22 22 H 1.48503 * 109.47316 * 60.00116 * 21 19 18 23 23 H 1.48498 * 109.46900 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47237 * 300.00075 * 21 19 18 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 29 29 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 31 31 H 1.07996 * 119.97290 * 359.97438 * 5 4 2 32 32 H 1.08002 * 120.03783 * 180.27026 * 6 5 4 33 33 H 0.97002 * 119.99822 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.46802 * 300.00051 * 11 10 8 35 35 H 1.08996 * 109.47206 * 60.00143 * 11 10 8 36 36 H 1.08996 * 109.47258 * 299.99577 * 12 11 10 37 37 H 1.08996 * 109.47216 * 59.99954 * 12 11 10 38 38 H 1.09000 * 109.46739 * 59.99556 * 14 13 12 39 39 H 1.09003 * 109.46953 * 179.97438 * 14 13 12 40 40 H 1.08999 * 109.46831 * 299.99517 * 14 13 12 41 41 H 1.08996 * 109.47035 * 60.00204 * 15 13 12 42 42 H 1.08995 * 109.47315 * 180.02562 * 15 13 12 43 43 H 1.09004 * 109.47042 * 300.00260 * 15 13 12 44 44 H 1.08999 * 109.47394 * 59.99878 * 16 13 12 45 45 H 1.09003 * 109.47108 * 180.02562 * 16 13 12 46 46 H 1.09006 * 109.47112 * 300.00168 * 16 13 12 47 47 H 1.07999 * 120.04358 * 180.02562 * 17 7 6 48 48 H 1.08997 * 109.46720 * 224.98369 * 19 18 17 49 49 H 0.96709 * 113.99789 * 60.00493 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 1.6484 -0.3447 -2.3773 6 6 2.1447 -1.0568 -3.4453 7 6 2.9603 -2.1700 -3.2227 8 6 3.4893 -2.9389 -4.3653 9 8 4.1991 -3.9067 -4.1702 10 7 3.1860 -2.5686 -5.6251 11 6 3.7109 -3.3325 -6.7597 12 6 3.2208 -2.7061 -8.0667 13 14 3.8891 -3.6771 -9.5095 14 6 3.2916 -5.4385 -9.4026 15 6 3.2917 -2.9149 -11.1010 16 6 5.7513 -3.6494 -9.4675 17 6 3.2741 -2.5529 -1.9153 18 6 2.7791 -1.8337 -0.8518 19 6 3.1172 -2.2454 0.5579 20 8 4.0862 -1.3445 1.0977 21 14 3.8126 -3.9737 0.5502 22 1 5.0407 -4.0095 -0.2840 23 1 4.1453 -4.3795 1.9394 24 1 2.8057 -4.9099 -0.0108 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.6461 1.8947 0.8901 29 1 3.0851 1.3422 0.0005 30 1 1.6460 1.8948 -0.8900 31 1 1.0143 0.5126 -2.5485 32 1 1.9006 -0.7587 -4.4542 33 1 2.6201 -1.7963 -5.7807 34 1 4.8005 -3.3163 -6.7355 35 1 3.3614 -4.3630 -6.6967 36 1 2.1313 -2.7219 -8.0911 37 1 3.5707 -1.6757 -8.1294 38 1 2.2020 -5.4546 -9.4271 39 1 3.6822 -6.0065 -10.2469 40 1 3.6408 -5.8847 -8.4714 41 1 3.6409 -1.8843 -11.1637 42 1 3.6822 -3.4832 -11.9451 43 1 2.2020 -2.9314 -11.1252 44 1 6.1005 -4.0956 -8.5364 45 1 6.1422 -4.2172 -10.3119 46 1 6.1009 -2.6188 -9.5300 47 1 3.9043 -3.4123 -1.7401 48 1 2.2158 -2.2192 1.1701 49 1 3.7913 -0.4241 1.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:59:08 Heat of formation + Delta-G solvation = -77.453880 kcal Electronic energy + Delta-G solvation = -25562.578431 eV Core-core repulsion = 22034.083236 eV Total energy + Delta-G solvation = -3528.495194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73347 -40.46703 -37.69917 -37.34102 -36.41461 -33.09673 -31.89558 -30.69422 -29.27845 -28.53541 -28.32195 -28.30455 -26.92220 -26.17409 -23.76016 -23.16675 -22.77962 -21.16108 -19.17221 -18.11675 -17.81035 -17.43836 -16.66580 -16.56695 -16.45755 -16.04329 -15.68564 -15.23346 -15.11154 -15.05237 -14.76153 -14.36688 -14.16210 -13.96976 -13.91136 -13.86211 -13.73739 -13.50383 -13.21367 -13.16550 -13.14496 -13.01092 -12.98947 -12.77724 -12.70042 -12.62066 -12.38938 -12.33873 -11.90897 -11.47199 -11.34348 -11.04353 -10.72626 -10.71159 -10.60146 -10.25654 -10.11503 -9.78649 -9.58775 -0.42633 0.12252 1.14452 1.40634 1.45835 1.63382 1.71417 1.88837 1.99441 2.02295 2.28911 2.60180 2.73753 2.75744 3.50382 3.64417 3.68656 3.90720 4.02736 4.09962 4.15426 4.20467 4.24341 4.40597 4.46650 4.47649 4.63359 4.66027 4.66755 4.76760 4.80234 4.81446 4.84818 4.85584 4.87995 4.88988 4.98500 5.01915 5.03861 5.03921 5.11431 5.20088 5.23349 5.42009 5.51941 5.58696 5.65392 5.67867 5.80832 6.21783 6.44830 6.67715 7.09708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.525 5.525 3 C 0.022 3.978 4 C 0.131 3.869 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.149 4.149 8 C 0.549 3.451 9 O -0.585 6.585 10 N -0.708 5.708 11 C 0.118 3.882 12 C -0.432 4.432 13 Si 1.100 2.900 14 C -0.475 4.475 15 C -0.462 4.462 16 C -0.476 4.476 17 C -0.079 4.079 18 C -0.111 4.111 19 C -0.065 4.065 20 O -0.548 6.548 21 Si 1.012 2.988 22 H -0.279 1.279 23 H -0.261 1.261 24 H -0.249 1.249 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.120 0.880 48 H 0.098 0.902 49 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 6.962 -3.198 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.124 4.124 4 C 0.037 3.963 5 C -0.169 4.169 6 C -0.078 4.078 7 C -0.152 4.152 8 C 0.337 3.663 9 O -0.466 6.466 10 N -0.361 5.361 11 C -0.004 4.004 12 C -0.515 4.515 13 Si 1.290 2.710 14 C -0.580 4.580 15 C -0.569 4.569 16 C -0.581 4.581 17 C -0.098 4.098 18 C -0.112 4.112 19 C -0.175 4.175 20 O -0.356 6.356 21 Si 0.836 3.164 22 H -0.205 1.205 23 H -0.185 1.185 24 H -0.172 1.172 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.138 0.862 48 H 0.116 0.884 49 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.075 4.703 -2.584 7.386 hybrid contribution -0.656 1.304 -0.818 1.674 sum -5.731 6.007 -3.401 8.972 Atomic orbital electron populations 1.22551 0.84144 1.03106 1.02380 1.59452 1.09970 1.15235 1.39974 1.22598 1.00933 0.86123 1.02700 1.18914 0.94205 0.93160 0.90052 1.21863 1.01513 1.01448 0.92076 1.21458 0.93450 0.91924 1.00973 1.19912 1.03382 0.99196 0.92722 1.18547 0.79918 0.83645 0.84199 1.90781 1.39837 1.29838 1.86170 1.46064 1.52280 1.33158 1.04648 1.21240 0.98883 0.95667 0.84628 1.26620 1.08042 1.09807 1.07066 0.77804 0.64289 0.64301 0.64614 1.26469 1.06439 1.21096 1.04044 1.26249 1.06472 1.07477 1.16660 1.26478 1.23206 1.04436 1.03983 1.21183 0.97438 0.99135 0.92058 1.20180 0.98862 0.96266 0.95905 1.24947 0.97571 1.04064 0.90960 1.86668 1.42065 1.22042 1.84817 0.84490 0.79269 0.73146 0.79514 1.20461 1.18535 1.17244 0.91436 0.93764 0.89307 0.89087 0.91085 0.93871 0.82684 0.82109 0.74651 0.91983 0.91871 0.88224 0.88289 0.91008 0.91481 0.92071 0.90873 0.91482 0.90844 0.92094 0.91477 0.91056 0.86231 0.88420 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.15 9.33 127.69 1.19 1.04 16 2 N -0.52 1.85 3.70 -745.09 -2.76 -0.91 16 3 C 0.02 -0.15 9.00 127.69 1.15 1.00 16 4 C 0.13 -0.04 4.65 38.47 0.18 0.14 16 5 C -0.15 0.54 8.57 22.36 0.19 0.73 16 6 C -0.06 0.16 9.53 22.50 0.21 0.38 16 7 C -0.15 -0.74 5.88 -20.08 -0.12 -0.86 16 8 C 0.55 4.56 7.76 86.69 0.67 5.23 16 9 O -0.58 -10.28 16.34 -4.01 -0.07 -10.35 16 10 N -0.71 -0.24 5.50 -466.28 -2.57 -2.81 16 11 C 0.12 -0.03 5.05 86.38 0.44 0.40 16 12 C -0.43 3.18 4.56 71.98 0.33 3.51 16 13 Si 1.10 -7.87 12.19 68.60 0.84 -7.03 16 14 C -0.48 1.31 8.65 113.37 0.98 2.29 16 15 C -0.46 2.65 8.65 113.37 0.98 3.63 16 16 C -0.48 1.23 8.65 113.37 0.98 2.21 16 17 C -0.08 -0.64 8.19 22.50 0.18 -0.45 16 18 C -0.11 -0.48 5.28 -19.78 -0.10 -0.59 16 19 C -0.07 -0.27 2.30 71.24 0.16 -0.11 16 20 O -0.55 -2.92 12.65 -148.98 -1.89 -4.81 16 21 Si 1.01 7.16 25.74 68.60 1.77 8.92 16 22 H -0.28 -3.31 6.73 99.48 0.67 -2.64 16 23 H -0.26 -2.03 7.11 99.48 0.71 -1.32 16 24 H -0.25 -1.69 7.11 99.48 0.71 -0.99 16 25 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.04 -0.34 7.08 -2.39 -0.02 -0.36 16 27 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 28 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 29 H 0.07 -0.41 7.52 -2.39 -0.02 -0.43 16 30 H 0.04 -0.34 7.46 -2.39 -0.02 -0.36 16 31 H 0.16 -1.33 7.01 -2.91 -0.02 -1.35 16 32 H 0.16 -1.62 6.39 -2.91 -0.02 -1.64 16 33 H 0.41 -2.84 6.49 -92.71 -0.60 -3.44 16 34 H 0.06 0.12 7.79 -2.39 -0.02 0.10 16 35 H 0.06 0.11 7.79 -2.39 -0.02 0.09 16 36 H 0.10 -0.97 7.96 -2.39 -0.02 -0.98 16 37 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 38 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 39 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 40 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 41 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 42 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 43 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 44 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 45 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 46 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 47 H 0.12 1.42 4.46 -2.91 -0.01 1.40 16 48 H 0.10 0.10 7.78 -2.39 -0.02 0.08 16 49 H 0.38 0.04 7.56 -74.05 -0.56 -0.52 16 Total: 0.00 -19.00 392.13 3.25 -15.75 By element: Atomic # 1 Polarization: -17.83 SS G_CDS: 0.50 Total: -17.33 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.43 Total: 18.56 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -5.33 Total: -3.72 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.95 Total: -15.16 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.60 Total: 1.89 kcal Total: -19.00 3.25 -15.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.703 kcal (2) G-P(sol) polarization free energy of solvation -19.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds