Wall clock time and date at job start Mon Mar 8 2021 00:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86307 * 109.46683 * 2 1 4 4 C 1.86296 * 109.47375 * 240.00306 * 2 1 3 5 5 C 1.86302 * 109.47066 * 119.99805 * 2 1 3 6 6 C 1.53001 * 109.46768 * 60.00667 * 5 2 1 7 7 N 1.46506 * 109.46715 * 179.97438 * 6 5 2 8 8 C 1.34771 * 119.99917 * 179.97438 * 7 6 5 9 9 O 1.21660 * 119.99864 * 359.97438 * 8 7 6 10 10 C 1.47046 * 120.00291 * 180.02562 * 8 7 6 11 11 C 1.36220 * 123.49611 * 179.97438 * 10 8 7 12 12 Cl 1.73603 * 124.60287 * 0.02813 * 11 10 8 13 13 S 1.70444 * 110.79318 * 180.02562 * 11 10 8 14 14 C 1.75495 * 92.46407 * 359.97438 * 13 11 10 15 15 C 1.50701 * 124.68648 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.46878 * 245.02345 * 15 14 13 17 17 Si 1.86300 * 109.46948 * 5.02563 * 15 14 13 18 18 H 1.48503 * 109.47262 * 60.00072 * 17 15 14 19 19 H 1.48500 * 109.46912 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46942 * 299.99736 * 17 15 14 21 21 C 1.32698 * 110.63018 * 0.26650 * 14 13 11 22 22 H 1.08991 * 109.47063 * 299.99393 * 1 2 3 23 23 H 1.09001 * 109.46937 * 60.00340 * 1 2 3 24 24 H 1.09001 * 109.46433 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46966 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47283 * 300.00293 * 3 2 1 27 27 H 1.09004 * 109.46718 * 60.00248 * 3 2 1 28 28 H 1.09005 * 109.47047 * 299.99845 * 4 2 1 29 29 H 1.08999 * 109.46926 * 59.99502 * 4 2 1 30 30 H 1.09001 * 109.47263 * 179.97438 * 4 2 1 31 31 H 1.08990 * 109.47341 * 300.00139 * 5 2 1 32 32 H 1.09001 * 109.46895 * 180.02562 * 5 2 1 33 33 H 1.08994 * 109.47316 * 60.00042 * 6 5 2 34 34 H 1.09001 * 109.47065 * 299.99470 * 6 5 2 35 35 H 0.96999 * 119.99655 * 359.97438 * 7 6 5 36 36 H 1.09001 * 109.46927 * 125.02280 * 15 14 13 37 37 H 0.96695 * 113.99582 * 59.99825 * 16 15 14 38 38 H 1.07999 * 123.45322 * 179.70231 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9741 -2.3207 1.5211 7 7 2.4630 -3.0115 2.7170 8 6 2.1372 -4.3017 2.9304 9 8 1.4367 -4.8926 2.1302 10 6 2.6273 -4.9949 4.1311 11 6 2.3417 -6.2957 4.4173 12 17 1.3662 -7.3326 3.4238 13 16 3.0723 -6.7671 5.8833 14 6 3.7838 -5.1814 6.1264 15 6 4.6420 -4.7979 7.3043 16 8 3.9729 -3.7982 8.0756 17 14 4.9480 -6.2989 8.3645 18 1 5.6433 -7.3378 7.5629 19 1 5.7931 -5.9209 9.5256 20 1 3.6509 -6.8344 8.8505 21 6 3.4576 -4.3652 5.1322 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.5740 1.7566 -0.0005 26 1 2.1206 2.2704 -0.8899 27 1 2.1206 2.2703 0.8901 28 1 2.1208 -1.9058 -1.5212 29 1 2.1207 -0.3643 -2.4111 30 1 3.5741 -0.8777 -1.5213 31 1 2.1207 -0.3644 2.4111 32 1 3.5741 -0.8778 1.5214 33 1 2.3375 -2.8345 0.6311 34 1 0.8841 -2.3208 1.5211 35 1 3.0211 -2.5402 3.3551 36 1 5.5940 -4.4049 6.9475 37 1 3.1166 -4.0794 8.4259 38 1 3.7811 -3.3364 5.0761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_13431040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:59:35 Heat of formation + Delta-G solvation = -93.242644 kcal Electronic energy + Delta-G solvation = -20104.057974 eV Core-core repulsion = 16836.269349 eV Total energy + Delta-G solvation = -3267.788625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 321.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88745 -38.97356 -37.92916 -37.00619 -36.17237 -31.94885 -31.28145 -29.44872 -28.46835 -28.43905 -26.98511 -25.91593 -23.20497 -22.22729 -20.69707 -19.40266 -18.15732 -17.81410 -16.84948 -16.65921 -16.39544 -16.05620 -15.57447 -15.23678 -14.91709 -14.62217 -14.30122 -14.25529 -14.20816 -14.04981 -13.91702 -13.83992 -13.33488 -13.24630 -13.12249 -13.01108 -12.88212 -12.59561 -12.50053 -12.45081 -12.34243 -12.01424 -11.86386 -11.15608 -10.87713 -10.84265 -10.75618 -10.51929 -10.06130 -9.89924 -9.66615 -0.59469 -0.22809 0.40302 0.70727 0.91129 1.09135 1.23824 1.33995 1.59636 1.74521 1.80675 1.82344 2.33512 2.36092 2.64628 3.15093 3.41493 3.81523 3.88216 4.05019 4.15309 4.29983 4.41890 4.63389 4.67836 4.68351 4.69072 4.73019 4.73428 4.75139 4.78227 4.89955 4.93878 5.14986 5.43188 5.46735 5.53480 5.55030 6.28967 6.53242 7.27268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.025 2.975 3 C -0.451 4.451 4 C -0.454 4.454 5 C -0.434 4.434 6 C 0.130 3.870 7 N -0.722 5.722 8 C 0.572 3.428 9 O -0.520 6.520 10 C -0.158 4.158 11 C -0.112 4.112 12 Cl 0.027 6.973 13 S 0.218 5.782 14 C -0.235 4.235 15 C -0.037 4.037 16 O -0.531 6.531 17 Si 0.885 3.115 18 H -0.230 1.230 19 H -0.221 1.221 20 H -0.230 1.230 21 C -0.067 4.067 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.131 0.869 37 H 0.380 0.620 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 2.625 2.846 4.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.220 2.780 3 C -0.559 4.559 4 C -0.562 4.562 5 C -0.518 4.518 6 C 0.007 3.993 7 N -0.375 5.375 8 C 0.357 3.643 9 O -0.397 6.397 10 C -0.177 4.177 11 C -0.259 4.259 12 Cl 0.056 6.944 13 S 0.483 5.517 14 C -0.353 4.353 15 C -0.150 4.150 16 O -0.336 6.336 17 Si 0.704 3.296 18 H -0.153 1.153 19 H -0.143 1.143 20 H -0.153 1.153 21 C -0.097 4.097 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.235 0.765 36 H 0.149 0.851 37 H 0.227 0.773 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.756 0.354 3.364 4.363 hybrid contribution -0.433 1.507 -0.845 1.781 sum 2.323 1.861 2.519 3.899 Atomic orbital electron populations 1.26190 1.20813 1.04655 1.04508 0.78966 0.66938 0.66550 0.65588 1.26131 1.06267 1.18897 1.04566 1.26192 1.06268 1.08276 1.15433 1.26579 1.06645 1.01272 1.17257 1.21087 0.99479 0.91225 0.87502 1.46027 1.53903 1.11541 1.26048 1.17431 0.80457 0.81794 0.84668 1.90878 1.36978 1.65914 1.45914 1.20299 1.05217 0.93106 0.99098 1.25391 1.03393 0.96266 1.00811 1.98441 1.66347 1.63075 1.66531 1.83437 1.43549 1.11457 1.13294 1.24795 1.08974 0.97573 1.03914 1.24372 0.96786 1.01981 0.91891 1.86551 1.37693 1.39864 1.69523 0.86372 0.84310 0.76677 0.82252 1.15295 1.14342 1.15295 1.21018 0.96641 1.00692 0.91328 0.91241 0.91141 0.91076 0.91232 0.91083 0.91222 0.91072 0.91140 0.91249 0.89732 0.89749 0.91077 0.91066 0.76514 0.85119 0.77270 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.72 8.65 101.05 0.87 1.60 16 2 Si 1.02 -3.39 12.19 -169.99 -2.07 -5.46 16 3 C -0.45 0.99 8.65 101.05 0.87 1.87 16 4 C -0.45 0.73 8.65 101.05 0.87 1.60 16 5 C -0.43 1.27 4.56 37.16 0.17 1.43 16 6 C 0.13 -0.05 5.05 -4.04 -0.02 -0.07 16 7 N -0.72 -0.15 5.53 -61.50 -0.34 -0.49 16 8 C 0.57 1.86 7.79 -12.69 -0.10 1.76 16 9 O -0.52 -3.45 14.91 5.22 0.08 -3.37 16 10 C -0.16 -0.29 5.98 -104.58 -0.63 -0.92 16 11 C -0.11 -0.26 6.87 30.01 0.21 -0.06 16 12 Cl 0.03 0.10 27.20 -51.86 -1.41 -1.31 16 13 S 0.22 -0.02 20.19 -107.50 -2.17 -2.19 16 14 C -0.24 0.29 5.65 -36.19 -0.20 0.08 16 15 C -0.04 0.09 2.94 36.01 0.11 0.20 16 16 O -0.53 1.04 12.88 -35.23 -0.45 0.58 16 17 Si 0.88 -1.88 26.20 -169.99 -4.45 -6.34 16 18 H -0.23 0.34 7.11 56.52 0.40 0.74 16 19 H -0.22 0.25 7.11 56.52 0.40 0.66 16 20 H -0.23 0.45 7.11 56.52 0.40 0.85 16 21 C -0.07 0.06 9.75 -39.00 -0.38 -0.32 16 22 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 24 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.07 7.79 -51.93 -0.40 -0.48 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 32 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 33 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 34 H 0.07 0.02 7.79 -51.93 -0.40 -0.39 16 35 H 0.40 -0.96 7.02 -40.82 -0.29 -1.24 16 36 H 0.13 -0.49 7.96 -51.93 -0.41 -0.91 16 37 H 0.38 -1.85 8.70 45.56 0.40 -1.46 16 38 H 0.16 -0.50 7.10 -52.49 -0.37 -0.88 16 LS Contribution 348.59 15.07 5.25 5.25 Total: 0.00 -6.65 348.59 -8.61 -15.26 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: -4.81 Total: -9.12 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 1.77 Total: 7.18 kcal Atomic # 7 Polarization: -0.15 SS G_CDS: -0.34 Total: -0.49 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -0.38 Total: -2.79 kcal Atomic # 14 Polarization: -5.27 SS G_CDS: -6.53 Total: -11.80 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.17 Total: -2.19 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.41 Total: -1.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -6.65 -8.61 -15.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13431040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.986 kcal (2) G-P(sol) polarization free energy of solvation -6.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds