Wall clock time and date at job start Mon Mar 8 2021 00:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86307 * 109.46683 * 2 1 4 4 C 1.86296 * 109.47375 * 240.00306 * 2 1 3 5 5 C 1.86302 * 109.47066 * 119.99805 * 2 1 3 6 6 C 1.53001 * 109.46768 * 60.00667 * 5 2 1 7 7 N 1.46506 * 109.46715 * 179.97438 * 6 5 2 8 8 C 1.34771 * 119.99917 * 179.97438 * 7 6 5 9 9 O 1.21660 * 119.99864 * 359.97438 * 8 7 6 10 10 C 1.47046 * 120.00291 * 180.02562 * 8 7 6 11 11 C 1.36220 * 123.49611 * 179.97438 * 10 8 7 12 12 Cl 1.73603 * 124.60287 * 0.02813 * 11 10 8 13 13 S 1.70444 * 110.79318 * 180.02562 * 11 10 8 14 14 C 1.75495 * 92.46407 * 359.97438 * 13 11 10 15 15 C 1.50701 * 124.68648 * 180.02562 * 14 13 11 16 16 O 1.42903 * 109.46878 * 245.02345 * 15 14 13 17 17 Si 1.86300 * 109.46948 * 5.02563 * 15 14 13 18 18 H 1.48503 * 109.47262 * 60.00072 * 17 15 14 19 19 H 1.48500 * 109.46912 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46942 * 299.99736 * 17 15 14 21 21 C 1.32698 * 110.63018 * 0.26650 * 14 13 11 22 22 H 1.08991 * 109.47063 * 299.99393 * 1 2 3 23 23 H 1.09001 * 109.46937 * 60.00340 * 1 2 3 24 24 H 1.09001 * 109.46433 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46966 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47283 * 300.00293 * 3 2 1 27 27 H 1.09004 * 109.46718 * 60.00248 * 3 2 1 28 28 H 1.09005 * 109.47047 * 299.99845 * 4 2 1 29 29 H 1.08999 * 109.46926 * 59.99502 * 4 2 1 30 30 H 1.09001 * 109.47263 * 179.97438 * 4 2 1 31 31 H 1.08990 * 109.47341 * 300.00139 * 5 2 1 32 32 H 1.09001 * 109.46895 * 180.02562 * 5 2 1 33 33 H 1.08994 * 109.47316 * 60.00042 * 6 5 2 34 34 H 1.09001 * 109.47065 * 299.99470 * 6 5 2 35 35 H 0.96999 * 119.99655 * 359.97438 * 7 6 5 36 36 H 1.09001 * 109.46927 * 125.02280 * 15 14 13 37 37 H 0.96695 * 113.99582 * 59.99825 * 16 15 14 38 38 H 1.07999 * 123.45322 * 179.70231 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8781 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9741 -2.3207 1.5211 7 7 2.4630 -3.0115 2.7170 8 6 2.1372 -4.3017 2.9304 9 8 1.4367 -4.8926 2.1302 10 6 2.6273 -4.9949 4.1311 11 6 2.3417 -6.2957 4.4173 12 17 1.3662 -7.3326 3.4238 13 16 3.0723 -6.7671 5.8833 14 6 3.7838 -5.1814 6.1264 15 6 4.6420 -4.7979 7.3043 16 8 3.9729 -3.7982 8.0756 17 14 4.9480 -6.2989 8.3645 18 1 5.6433 -7.3378 7.5629 19 1 5.7931 -5.9209 9.5256 20 1 3.6509 -6.8344 8.8505 21 6 3.4576 -4.3652 5.1322 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.5740 1.7566 -0.0005 26 1 2.1206 2.2704 -0.8899 27 1 2.1206 2.2703 0.8901 28 1 2.1208 -1.9058 -1.5212 29 1 2.1207 -0.3643 -2.4111 30 1 3.5741 -0.8777 -1.5213 31 1 2.1207 -0.3644 2.4111 32 1 3.5741 -0.8778 1.5214 33 1 2.3375 -2.8345 0.6311 34 1 0.8841 -2.3208 1.5211 35 1 3.0211 -2.5402 3.3551 36 1 5.5940 -4.4049 6.9475 37 1 3.1166 -4.0794 8.4259 38 1 3.7811 -3.3364 5.0761 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13431040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:59:35 Heat of formation + Delta-G solvation = -88.964323 kcal Electronic energy + Delta-G solvation = -20103.872452 eV Core-core repulsion = 16836.269349 eV Total energy + Delta-G solvation = -3267.603103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 321.053 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02437 -38.91959 -38.02943 -36.97121 -36.27911 -31.93072 -31.23011 -29.29513 -28.30317 -28.28649 -26.90624 -25.91621 -23.13709 -22.21860 -20.75823 -19.41442 -18.07355 -17.80261 -16.92884 -16.68046 -16.26244 -15.98516 -15.58488 -15.23413 -14.83915 -14.61272 -14.30444 -14.23866 -14.11588 -13.89756 -13.80937 -13.72556 -13.17744 -13.13963 -12.97190 -12.92948 -12.76227 -12.63025 -12.44878 -12.34363 -12.24717 -12.14918 -11.76645 -11.18494 -10.70627 -10.69076 -10.59927 -10.50597 -10.17525 -9.91010 -9.67680 -0.66326 -0.24931 0.43061 0.71958 1.00090 1.08590 1.39987 1.48483 1.78038 1.90607 2.01670 2.04289 2.17827 2.40068 2.78029 3.30276 3.61585 3.84519 3.87759 4.16277 4.28595 4.42401 4.57864 4.71270 4.78136 4.82023 4.83421 4.86815 4.87536 4.89667 4.90642 4.96426 5.07886 5.28454 5.48242 5.60528 5.67218 5.69521 6.50623 6.63903 7.16560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.100 2.900 3 C -0.462 4.462 4 C -0.475 4.475 5 C -0.432 4.432 6 C 0.122 3.878 7 N -0.708 5.708 8 C 0.563 3.437 9 O -0.564 6.564 10 C -0.165 4.165 11 C -0.136 4.136 12 Cl 0.002 6.998 13 S 0.229 5.771 14 C -0.224 4.224 15 C -0.026 4.026 16 O -0.540 6.540 17 Si 0.898 3.102 18 H -0.240 1.240 19 H -0.234 1.234 20 H -0.234 1.234 21 C -0.064 4.064 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.414 0.586 36 H 0.150 0.850 37 H 0.392 0.608 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 4.126 4.054 6.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.289 2.711 3 C -0.569 4.569 4 C -0.580 4.580 5 C -0.515 4.515 6 C -0.001 4.001 7 N -0.361 5.361 8 C 0.349 3.651 9 O -0.444 6.444 10 C -0.185 4.185 11 C -0.283 4.283 12 Cl 0.031 6.969 13 S 0.494 5.506 14 C -0.342 4.342 15 C -0.140 4.140 16 O -0.347 6.347 17 Si 0.719 3.281 18 H -0.164 1.164 19 H -0.157 1.157 20 H -0.157 1.157 21 C -0.093 4.093 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.252 0.748 36 H 0.168 0.832 37 H 0.241 0.759 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.990 1.874 4.583 6.359 hybrid contribution -0.804 1.054 -1.184 1.777 sum 3.186 2.928 3.400 5.503 Atomic orbital electron populations 1.26465 1.23147 1.03986 1.04416 0.77810 0.64358 0.65044 0.63838 1.26262 1.06598 1.19531 1.04541 1.26465 1.06566 1.08100 1.16874 1.26611 1.07583 0.99261 1.18076 1.21197 0.99153 0.92687 0.87018 1.46000 1.53138 1.10650 1.26288 1.17760 0.80090 0.82538 0.84725 1.90852 1.39085 1.67026 1.47444 1.20449 1.05681 0.93079 0.99263 1.25626 1.04271 0.96607 1.01788 1.98422 1.67204 1.63770 1.67468 1.83395 1.42967 1.12416 1.11783 1.25002 1.08390 0.96650 1.04153 1.24341 0.97148 1.01587 0.90914 1.86534 1.38646 1.40043 1.69483 0.86180 0.83599 0.76648 0.81628 1.16368 1.15687 1.15721 1.21186 0.95929 1.01811 0.90330 0.91060 0.91525 0.92029 0.90885 0.91516 0.90894 0.92024 0.91526 0.91048 0.88373 0.88338 0.91950 0.91965 0.74799 0.83222 0.75858 0.79638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.27 8.65 113.37 0.98 2.26 16 2 Si 1.10 -7.76 12.19 68.60 0.84 -6.93 16 3 C -0.46 2.52 8.65 113.37 0.98 3.50 16 4 C -0.47 1.29 8.65 113.37 0.98 2.27 16 5 C -0.43 3.12 4.56 71.98 0.33 3.45 16 6 C 0.12 -0.08 5.05 86.38 0.44 0.36 16 7 N -0.71 0.00 5.53 -466.72 -2.58 -2.59 16 8 C 0.56 4.05 7.79 86.55 0.67 4.72 16 9 O -0.56 -8.58 14.91 -4.22 -0.06 -8.65 16 10 C -0.17 -0.62 5.98 -19.84 -0.12 -0.74 16 11 C -0.14 -0.75 6.87 67.35 0.46 -0.29 16 12 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.05 16 13 S 0.23 -0.05 20.19 -56.49 -1.14 -1.19 16 14 C -0.22 0.87 5.65 24.51 0.14 1.01 16 15 C -0.03 0.18 2.94 71.24 0.21 0.39 16 16 O -0.54 3.28 12.88 -148.98 -1.92 1.37 16 17 Si 0.90 -4.51 26.20 68.60 1.80 -2.71 16 18 H -0.24 0.79 7.11 99.48 0.71 1.49 16 19 H -0.23 0.63 7.11 99.48 0.71 1.34 16 20 H -0.23 1.04 7.11 99.48 0.71 1.74 16 21 C -0.06 0.21 9.75 22.70 0.22 0.43 16 22 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 23 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 24 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 25 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 26 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 28 H 0.06 -0.05 7.79 -2.38 -0.02 -0.06 16 29 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.10 -0.90 7.96 -2.39 -0.02 -0.92 16 32 H 0.10 -0.92 7.96 -2.39 -0.02 -0.94 16 33 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 34 H 0.06 0.08 7.79 -2.39 -0.02 0.07 16 35 H 0.41 -2.69 7.02 -92.71 -0.65 -3.34 16 36 H 0.15 -1.55 7.96 -2.39 -0.02 -1.57 16 37 H 0.39 -4.55 8.70 -74.06 -0.64 -5.19 16 38 H 0.19 -1.72 7.10 -2.91 -0.02 -1.74 16 Total: 0.00 -17.17 348.59 2.69 -14.48 By element: Atomic # 1 Polarization: -11.64 SS G_CDS: 0.54 Total: -11.10 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.29 Total: 17.36 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -2.58 Total: -2.59 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.98 Total: -7.28 kcal Atomic # 14 Polarization: -12.27 SS G_CDS: 2.63 Total: -9.63 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.14 Total: -1.19 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Total: -17.17 2.69 -14.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13431040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.483 kcal (2) G-P(sol) polarization free energy of solvation -17.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds