Wall clock time and date at job start Mon Mar 8 2021 00:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86300 * 109.47474 * 2 1 4 4 C 1.86304 * 109.47165 * 239.99568 * 2 1 3 5 5 C 1.86301 * 109.46963 * 119.99794 * 2 1 3 6 6 C 1.53006 * 109.47122 * 60.00142 * 5 2 1 7 7 N 1.46504 * 109.46883 * 180.02562 * 6 5 2 8 8 C 1.34775 * 119.99531 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00327 * 0.02562 * 8 7 6 10 10 C 1.47378 * 119.99868 * 179.97438 * 8 7 6 11 11 C 1.36418 * 127.19230 * 359.69099 * 10 8 7 12 12 O 1.33649 * 108.39371 * 179.88903 * 11 10 8 13 13 C 1.34215 * 110.91441 * 0.38695 * 12 11 10 14 14 C 1.50696 * 125.44088 * 179.75847 * 13 12 11 15 15 O 1.42897 * 109.47253 * 245.00163 * 14 13 12 16 16 Si 1.86311 * 109.47035 * 5.00303 * 14 13 12 17 17 H 1.48499 * 109.46928 * 59.99850 * 16 14 13 18 18 H 1.48496 * 109.46669 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46722 * 299.99678 * 16 14 13 20 20 C 1.34174 * 109.12030 * 359.76270 * 13 12 11 21 21 H 1.09004 * 109.47066 * 300.00245 * 1 2 3 22 22 H 1.09004 * 109.46812 * 59.99778 * 1 2 3 23 23 H 1.08992 * 109.47172 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47573 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46785 * 299.99938 * 3 2 1 26 26 H 1.09004 * 109.47174 * 59.99821 * 3 2 1 27 27 H 1.09002 * 109.47281 * 300.00193 * 4 2 1 28 28 H 1.09004 * 109.46722 * 60.00599 * 4 2 1 29 29 H 1.09001 * 109.46859 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47439 * 300.00340 * 5 2 1 31 31 H 1.09001 * 109.47357 * 180.02562 * 5 2 1 32 32 H 1.09001 * 109.47002 * 299.99654 * 6 5 2 33 33 H 1.08993 * 109.46955 * 60.00091 * 6 5 2 34 34 H 0.96992 * 119.99966 * 359.97438 * 7 6 5 35 35 H 1.07994 * 125.79858 * 0.02562 * 11 10 8 36 36 H 1.09003 * 109.47215 * 124.99735 * 14 13 12 37 37 H 0.96703 * 113.99943 * 60.00465 * 15 14 13 38 38 H 1.08006 * 127.02268 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8784 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5212 7 7 2.4618 -3.0111 2.7178 8 6 2.1357 -4.3012 2.9313 9 8 1.4369 -4.8924 2.1306 10 6 2.6268 -4.9960 4.1347 11 6 3.4192 -4.4809 5.1186 12 8 3.6337 -5.4348 6.0298 13 6 3.0171 -6.5755 5.6837 14 6 3.0464 -7.8590 6.4729 15 8 3.7231 -8.8666 5.7187 16 14 3.9445 -7.5787 8.0810 17 1 3.2413 -6.5316 8.8647 18 1 3.9729 -8.8433 8.8589 19 1 5.3347 -7.1379 7.8012 20 6 2.3704 -6.3907 4.5227 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.5741 1.7564 -0.0005 25 1 2.1208 2.2702 -0.8900 26 1 2.1208 2.2703 0.8900 27 1 2.1207 -1.9060 -1.5211 28 1 2.1208 -0.3645 -2.4111 29 1 3.5741 -0.8787 -1.5208 30 1 2.1206 -0.3644 2.4112 31 1 3.5740 -0.8778 1.5215 32 1 0.8840 -2.3207 1.5212 33 1 2.3373 -2.8345 0.6313 34 1 3.0194 -2.5397 3.3562 35 1 3.8054 -3.4731 5.1559 36 1 2.0260 -8.1826 6.6783 37 1 4.6386 -8.6455 5.4995 38 1 1.7814 -7.1179 3.9834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_13456056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 00:59:42 Heat of formation + Delta-G solvation = -103.804888 kcal Electronic energy + Delta-G solvation = -18319.466216 eV Core-core repulsion = 15286.948692 eV Total energy + Delta-G solvation = -3032.517524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.73402 -40.51109 -37.99106 -36.32871 -34.06820 -32.25788 -30.90085 -29.27599 -28.31176 -28.29390 -26.68566 -25.19178 -23.10536 -22.31693 -20.94194 -19.33848 -17.89861 -17.55627 -17.38479 -16.89075 -16.50023 -16.18618 -15.72287 -14.97576 -14.94158 -14.60928 -14.17030 -14.04769 -13.95687 -13.83819 -13.73717 -13.57181 -13.18499 -13.15376 -12.97903 -12.84328 -12.77731 -12.38070 -12.17095 -12.03913 -11.45990 -10.97006 -10.71829 -10.70016 -10.65344 -10.55272 -10.16113 -9.78588 0.24849 0.82093 1.07205 1.45661 1.51189 1.73613 1.79281 1.93511 2.00548 2.03644 2.25097 2.32914 2.76191 3.32213 3.52694 3.60439 3.98095 4.12906 4.26303 4.39343 4.47624 4.52160 4.69433 4.81106 4.82426 4.85782 4.86352 4.88715 4.89191 4.90112 5.06022 5.13610 5.25615 5.45626 5.59761 5.66359 5.68936 5.82330 6.50932 6.56612 7.16205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.101 2.899 3 C -0.462 4.462 4 C -0.476 4.476 5 C -0.431 4.431 6 C 0.120 3.880 7 N -0.709 5.709 8 C 0.579 3.421 9 O -0.589 6.589 10 C -0.270 4.270 11 C 0.062 3.938 12 O -0.173 6.173 13 C -0.056 4.056 14 C -0.044 4.044 15 O -0.544 6.544 16 Si 1.005 2.995 17 H -0.260 1.260 18 H -0.260 1.260 19 H -0.255 1.255 20 C -0.149 4.149 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.416 0.584 35 H 0.262 0.738 36 H 0.146 0.854 37 H 0.394 0.606 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 5.430 3.427 7.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.291 2.709 3 C -0.569 4.569 4 C -0.581 4.581 5 C -0.514 4.514 6 C -0.002 4.002 7 N -0.362 5.362 8 C 0.368 3.632 9 O -0.471 6.471 10 C -0.274 4.274 11 C -0.008 4.008 12 O -0.069 6.069 13 C -0.104 4.104 14 C -0.153 4.153 15 O -0.351 6.351 16 Si 0.826 3.174 17 H -0.184 1.184 18 H -0.184 1.184 19 H -0.178 1.178 20 C -0.169 4.169 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.277 0.723 36 H 0.163 0.837 37 H 0.243 0.757 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.627 4.870 3.939 7.238 hybrid contribution 0.024 0.235 -0.846 0.878 sum 3.652 5.105 3.093 6.998 Atomic orbital electron populations 1.26483 1.23268 1.03948 1.04431 0.77790 0.64264 0.65039 0.63840 1.26257 1.06610 1.19482 1.04550 1.26483 1.06587 1.08084 1.16970 1.26599 1.07673 0.99018 1.18124 1.21205 0.99156 0.92829 0.87034 1.45960 1.53359 1.10576 1.26341 1.17618 0.79224 0.82080 0.84305 1.90780 1.40441 1.67550 1.48335 1.21560 1.09580 0.96525 0.99740 1.25280 0.95475 0.94625 0.85456 1.83716 1.59212 1.19172 1.44781 1.22929 1.00451 0.88768 0.98291 1.24621 1.05680 0.81995 1.03053 1.86558 1.31233 1.41362 1.75948 0.84853 0.79129 0.79711 0.73718 1.18375 1.18382 1.17831 1.22589 1.02409 0.95263 0.96594 0.91029 0.91543 0.92099 0.90853 0.91558 0.90854 0.92101 0.91544 0.91023 0.88157 0.88145 0.92101 0.92090 0.74686 0.72251 0.83685 0.75651 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.43 8.65 113.37 0.98 2.41 16 2 Si 1.10 -8.39 12.19 68.60 0.84 -7.55 16 3 C -0.46 2.81 8.65 113.37 0.98 3.79 16 4 C -0.48 1.43 8.65 113.37 0.98 2.41 16 5 C -0.43 3.54 4.56 71.98 0.33 3.87 16 6 C 0.12 -0.13 5.05 86.38 0.44 0.31 16 7 N -0.71 0.73 5.55 -466.41 -2.59 -1.86 16 8 C 0.58 4.33 7.81 86.65 0.68 5.01 16 9 O -0.59 -10.39 16.98 -4.07 -0.07 -10.46 16 10 C -0.27 -1.01 6.31 -18.99 -0.12 -1.13 16 11 C 0.06 -0.26 11.61 67.39 0.78 0.52 16 12 O -0.17 0.15 8.90 4.50 0.04 0.19 16 13 C -0.06 -0.08 6.18 24.76 0.15 0.07 16 14 C -0.04 0.08 2.97 71.23 0.21 0.29 16 15 O -0.54 0.12 12.88 -148.98 -1.92 -1.80 16 16 Si 1.00 -2.82 27.38 68.60 1.88 -0.94 16 17 H -0.26 0.23 7.11 99.48 0.71 0.94 16 18 H -0.26 0.15 7.11 99.48 0.71 0.85 16 19 H -0.25 0.50 7.11 99.48 0.71 1.20 16 20 C -0.15 -0.88 10.90 23.65 0.26 -0.62 16 21 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 22 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 23 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 24 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 25 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 26 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 27 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 28 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.10 -1.06 7.96 -2.39 -0.02 -1.08 16 31 H 0.10 -1.07 7.96 -2.39 -0.02 -1.09 16 32 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 33 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 34 H 0.42 -3.82 7.44 -92.71 -0.69 -4.51 16 35 H 0.26 -4.07 7.47 -2.91 -0.02 -4.09 16 36 H 0.15 -0.59 7.96 -2.39 -0.02 -0.61 16 37 H 0.39 -2.71 8.70 -74.06 -0.64 -3.35 16 38 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 Total: 0.00 -22.60 329.03 4.33 -18.27 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: 0.48 Total: -12.78 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.67 Total: 16.93 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -2.59 Total: -1.86 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.95 Total: -12.07 kcal Atomic # 14 Polarization: -11.20 SS G_CDS: 2.71 Total: -8.49 kcal Total: -22.60 4.33 -18.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_13456056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.535 kcal (2) G-P(sol) polarization free energy of solvation -22.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds