Wall clock time and date at job start Mon Mar 8 2021 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86303 * 109.47186 * 2 1 4 4 C 1.86303 * 109.47263 * 239.99683 * 2 1 3 5 5 C 1.86303 * 109.46817 * 120.00033 * 2 1 3 6 6 C 1.52994 * 109.47189 * 59.99984 * 5 2 1 7 7 N 1.46500 * 109.47229 * 179.97438 * 6 5 2 8 8 C 1.34770 * 120.00669 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99650 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00465 * 180.02562 * 8 7 6 11 11 C 1.53542 * 109.82270 * 81.79309 * 10 8 7 12 12 C 1.53042 * 108.56200 * 180.48993 * 11 10 8 13 13 C 1.50202 * 110.24994 * 310.23459 * 12 11 10 14 14 C 1.50707 * 118.54967 * 200.27871 * 13 12 11 15 15 O 1.42897 * 109.46897 * 70.21223 * 14 13 12 16 16 Si 1.86300 * 109.47051 * 190.21493 * 14 13 12 17 17 H 1.48504 * 109.47106 * 60.00103 * 16 14 13 18 18 H 1.48504 * 109.46849 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47349 * 299.99707 * 16 14 13 20 20 C 1.31115 * 122.90854 * 20.50484 * 13 12 11 21 21 N 1.38930 * 121.84506 * 359.08766 * 20 13 12 22 22 H 1.08996 * 109.47302 * 300.00313 * 1 2 3 23 23 H 1.09007 * 109.47115 * 60.00516 * 1 2 3 24 24 H 1.08999 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46708 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46754 * 300.00027 * 3 2 1 27 27 H 1.09005 * 109.46732 * 59.99499 * 3 2 1 28 28 H 1.08999 * 109.47336 * 300.00339 * 4 2 1 29 29 H 1.09002 * 109.46532 * 60.00042 * 4 2 1 30 30 H 1.08996 * 109.46860 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.46902 * 299.99899 * 5 2 1 32 32 H 1.09006 * 109.46683 * 180.02562 * 5 2 1 33 33 H 1.08996 * 109.47268 * 60.00139 * 6 5 2 34 34 H 1.08996 * 109.47361 * 299.99668 * 6 5 2 35 35 H 0.97009 * 120.00073 * 359.97438 * 7 6 5 36 36 H 1.08993 * 109.86533 * 320.89477 * 10 8 7 37 37 H 1.08999 * 109.61814 * 300.21378 * 11 10 8 38 38 H 1.08995 * 109.62134 * 60.76333 * 11 10 8 39 39 H 1.08996 * 109.32573 * 70.68634 * 12 11 10 40 40 H 1.09003 * 109.32566 * 190.33796 * 12 11 10 41 41 H 1.09001 * 109.46980 * 310.21434 * 14 13 12 42 42 H 0.96698 * 113.99426 * 180.02562 * 15 14 13 43 43 H 1.08002 * 119.08189 * 179.37269 * 20 13 12 44 44 H 0.96997 * 120.55929 * 193.55616 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 6 1.9739 -2.3207 1.5212 7 7 2.4627 -3.0115 2.7170 8 6 2.1376 -4.3020 2.9301 9 8 1.4401 -4.8913 2.1320 10 6 2.6399 -5.0124 4.1606 11 6 1.7429 -4.6739 5.3599 12 6 2.2851 -5.3990 6.5937 13 6 2.5168 -6.8503 6.2838 14 6 2.5973 -7.8273 7.4285 15 8 1.3037 -7.9802 8.0161 16 14 3.1915 -9.4762 6.7969 17 1 4.5358 -9.3172 6.1863 18 1 3.2714 -10.4387 7.9250 19 1 2.2414 -9.9869 5.7762 20 6 2.6564 -7.3043 5.0617 21 7 2.5803 -6.4671 3.9556 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 3.5740 1.7564 0.0005 26 1 2.1207 2.2702 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1207 -1.9060 -1.5211 29 1 2.1207 -0.3645 -2.4111 30 1 3.5740 -0.8787 -1.5208 31 1 2.1206 -0.3644 2.4111 32 1 3.5740 -0.8779 1.5214 33 1 2.3372 -2.8345 0.6313 34 1 0.8839 -2.3207 1.5212 35 1 3.0209 -2.5403 3.3553 36 1 3.6661 -4.7103 4.3696 37 1 1.7543 -3.5978 5.5332 38 1 0.7238 -5.0042 5.1595 39 1 3.2239 -4.9375 6.8998 40 1 1.5623 -5.3192 7.4057 41 1 3.2947 -7.4525 8.1777 42 1 1.2806 -8.5960 8.7613 43 1 2.8309 -8.3593 4.9104 44 1 2.4897 -6.8361 3.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_15413834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:00:09 Heat of formation + Delta-G solvation = -100.761533 kcal Electronic energy + Delta-G solvation = -20799.376838 eV Core-core repulsion = 17681.860848 eV Total energy + Delta-G solvation = -3117.515990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34195 -39.46502 -37.39183 -36.32885 -33.34868 -33.22769 -31.26020 -29.30973 -28.31876 -28.30048 -27.40026 -25.37269 -23.91521 -23.11563 -21.71803 -19.18473 -19.10544 -18.26177 -17.51592 -17.21368 -16.51548 -16.26742 -15.42068 -15.26159 -15.16892 -14.87141 -14.42458 -14.19889 -14.15958 -14.06229 -13.91341 -13.80487 -13.73243 -13.27049 -13.19246 -13.15685 -13.11117 -12.98577 -12.78768 -12.51267 -12.35979 -12.09880 -11.72855 -11.57679 -11.28662 -11.13060 -10.71868 -10.70541 -10.50670 -10.13013 -10.09470 -8.44972 1.25099 1.32158 1.43353 1.46883 1.52958 1.70633 1.93123 2.00270 2.02619 2.18917 2.63153 2.77597 3.61319 3.71539 3.76176 4.00652 4.05959 4.14757 4.26637 4.27580 4.46020 4.59094 4.66778 4.69158 4.80270 4.81050 4.81895 4.85214 4.85783 4.88370 4.89313 5.06292 5.06944 5.22468 5.26110 5.32135 5.46026 5.58821 5.60324 5.65642 5.68260 6.25785 6.49678 6.77502 6.95929 7.13761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 Si 1.100 2.900 3 C -0.463 4.463 4 C -0.475 4.475 5 C -0.431 4.431 6 C 0.120 3.880 7 N -0.709 5.709 8 C 0.506 3.494 9 O -0.580 6.580 10 C 0.137 3.863 11 C -0.122 4.122 12 C -0.053 4.053 13 C -0.248 4.248 14 C -0.056 4.056 15 O -0.568 6.568 16 Si 0.966 3.034 17 H -0.259 1.259 18 H -0.261 1.261 19 H -0.279 1.279 20 C 0.120 3.880 21 N -0.741 5.741 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.418 0.582 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.391 0.609 43 H 0.127 0.873 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 4.665 2.852 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.581 4.581 2 Si 1.290 2.710 3 C -0.570 4.570 4 C -0.580 4.580 5 C -0.514 4.514 6 C -0.003 4.003 7 N -0.363 5.363 8 C 0.292 3.708 9 O -0.459 6.459 10 C 0.028 3.972 11 C -0.160 4.160 12 C -0.090 4.090 13 C -0.258 4.258 14 C -0.167 4.167 15 O -0.376 6.376 16 Si 0.793 3.207 17 H -0.184 1.184 18 H -0.186 1.186 19 H -0.205 1.205 20 C -0.001 4.001 21 N -0.374 5.374 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.240 0.760 43 H 0.144 0.856 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.164 4.018 1.546 5.990 hybrid contribution -0.129 -0.320 0.156 0.379 sum 4.036 3.698 1.702 5.732 Atomic orbital electron populations 1.26480 1.23253 1.03943 1.04411 0.77797 0.64255 0.65014 0.63921 1.26273 1.06596 1.19624 1.04522 1.26470 1.06573 1.08085 1.16906 1.26583 1.07593 0.99273 1.17994 1.21182 0.99066 0.92788 0.87229 1.46106 1.53027 1.10993 1.26127 1.20939 0.79868 0.82931 0.87066 1.90711 1.39473 1.67277 1.48482 1.21168 1.01484 0.81931 0.92610 1.21830 0.98080 1.02275 0.93843 1.20003 1.01630 0.90633 0.96713 1.20226 1.15885 0.97256 0.92454 1.24438 0.88848 1.05861 0.97596 1.86484 1.29585 1.69065 1.52504 0.85514 0.78813 0.76754 0.79578 1.18355 1.18580 1.20468 1.20467 0.97742 0.94440 0.87413 1.44321 1.82050 1.03455 1.07575 0.91054 0.91579 0.92074 0.90893 0.91571 0.90903 0.92035 0.91572 0.91032 0.88278 0.88282 0.92058 0.92180 0.74416 0.86647 0.87808 0.93215 0.89522 0.90902 0.89733 0.75983 0.85583 0.75918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.51 8.65 113.37 0.98 2.49 16 2 Si 1.10 -8.52 12.19 68.60 0.84 -7.68 16 3 C -0.46 2.74 8.65 113.37 0.98 3.72 16 4 C -0.48 1.60 8.65 113.37 0.98 2.58 16 5 C -0.43 3.61 4.56 71.98 0.33 3.94 16 6 C 0.12 -0.26 5.05 86.38 0.44 0.18 16 7 N -0.71 1.92 5.56 -463.09 -2.57 -0.66 16 8 C 0.51 1.90 7.08 87.66 0.62 2.52 16 9 O -0.58 -7.56 16.10 -3.02 -0.05 -7.61 16 10 C 0.14 0.05 3.36 44.33 0.15 0.20 16 11 C -0.12 0.01 5.47 30.79 0.17 0.18 16 12 C -0.05 -0.01 5.85 29.71 0.17 0.16 16 13 C -0.25 -0.81 5.40 -16.76 -0.09 -0.90 16 14 C -0.06 -0.02 2.80 71.24 0.20 0.17 16 15 O -0.57 -1.29 12.86 -148.98 -1.92 -3.21 16 16 Si 0.97 0.59 25.20 68.60 1.73 2.32 16 17 H -0.26 -0.41 7.11 99.48 0.71 0.30 16 18 H -0.26 -0.16 7.11 99.48 0.71 0.54 16 19 H -0.28 -1.36 6.88 99.48 0.68 -0.67 16 20 C 0.12 0.53 9.62 83.41 0.80 1.33 16 21 N -0.74 -3.24 5.46 -329.00 -1.80 -5.04 16 22 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 23 H 0.06 -0.16 7.96 -2.38 -0.02 -0.17 16 24 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 25 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 27 H 0.07 -0.45 7.96 -2.38 -0.02 -0.47 16 28 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 29 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 31 H 0.10 -1.03 7.96 -2.39 -0.02 -1.05 16 32 H 0.10 -1.04 7.96 -2.38 -0.02 -1.05 16 33 H 0.06 -0.01 7.79 -2.39 -0.02 -0.02 16 34 H 0.06 0.01 7.79 -2.39 -0.02 0.00 16 35 H 0.42 -3.91 8.47 -92.70 -0.79 -4.70 16 36 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 42 H 0.39 -2.53 8.74 -74.06 -0.65 -3.18 16 43 H 0.13 0.40 4.33 -2.91 -0.01 0.39 16 44 H 0.40 2.20 8.12 -92.71 -0.75 1.45 16 Total: 0.00 -18.65 354.79 1.50 -17.15 By element: Atomic # 1 Polarization: -11.37 SS G_CDS: -0.46 Total: -11.83 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.73 Total: 16.56 kcal Atomic # 7 Polarization: -1.32 SS G_CDS: -4.37 Total: -5.69 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.96 Total: -10.82 kcal Atomic # 14 Polarization: -7.93 SS G_CDS: 2.57 Total: -5.37 kcal Total: -18.65 1.50 -17.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_15413834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.607 kcal (2) G-P(sol) polarization free energy of solvation -18.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds