Wall clock time and date at job start Mon Mar 8 2021 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47003 * 2 1 4 4 C 1.86298 * 109.47357 * 240.00473 * 2 1 3 5 5 C 1.86298 * 109.47151 * 119.99926 * 2 1 3 6 6 C 1.53004 * 109.47085 * 60.00167 * 5 2 1 7 7 N 1.46499 * 109.47198 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 5 9 9 O 1.21623 * 120.00244 * 359.72094 * 8 7 6 10 10 C 1.47263 * 119.99630 * 179.72408 * 8 7 6 11 11 C 1.36337 * 126.96680 * 179.97438 * 10 8 7 12 12 C 1.50997 * 126.79130 * 0.02648 * 11 10 8 13 13 C 1.53373 * 108.26028 * 164.34400 * 12 11 10 14 14 C 1.53164 * 109.06959 * 48.41403 * 13 12 11 15 15 C 1.53139 * 109.52108 * 290.44769 * 14 13 12 16 16 N 1.35210 * 108.65832 * 179.97438 * 11 10 8 17 17 C 1.36421 * 109.90316 * 359.97438 * 16 11 10 18 18 C 1.50698 * 125.49574 * 180.02562 * 17 16 11 19 19 O 1.42901 * 109.47176 * 329.99458 * 18 17 16 20 20 Si 1.86306 * 109.47310 * 209.99900 * 18 17 16 21 21 H 1.48506 * 109.46869 * 59.99603 * 20 18 17 22 22 H 1.48497 * 109.47315 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46839 * 300.00231 * 20 18 17 24 24 C 1.34500 * 109.01144 * 359.74551 * 17 16 11 25 25 H 1.08994 * 109.47352 * 299.99966 * 1 2 3 26 26 H 1.09005 * 109.47324 * 59.99626 * 1 2 3 27 27 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47299 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47568 * 300.00334 * 3 2 1 30 30 H 1.09008 * 109.47130 * 59.99934 * 3 2 1 31 31 H 1.09004 * 109.46621 * 300.00063 * 4 2 1 32 32 H 1.08996 * 109.47123 * 59.99448 * 4 2 1 33 33 H 1.08998 * 109.47174 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47553 * 300.00519 * 5 2 1 35 35 H 1.09006 * 109.46853 * 180.02562 * 5 2 1 36 36 H 1.09009 * 109.46730 * 59.99699 * 6 5 2 37 37 H 1.08998 * 109.46846 * 300.00244 * 6 5 2 38 38 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 39 39 H 1.08997 * 109.70810 * 283.97433 * 12 11 10 40 40 H 1.09001 * 109.70554 * 44.59730 * 12 11 10 41 41 H 1.09000 * 109.51764 * 288.54789 * 13 12 11 42 42 H 1.09003 * 109.54909 * 168.29798 * 13 12 11 43 43 H 1.08994 * 109.46159 * 170.43675 * 14 13 12 44 44 H 1.09001 * 109.46190 * 50.46252 * 14 13 12 45 45 H 1.08995 * 109.56315 * 291.17563 * 15 14 13 46 46 H 1.08997 * 109.65322 * 170.88526 * 15 14 13 47 47 H 1.08997 * 109.47286 * 89.99927 * 18 17 16 48 48 H 0.96697 * 114.00121 * 300.00466 * 19 18 17 49 49 H 1.07999 * 126.81962 * 180.24195 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5211 7 7 2.4628 -3.0115 2.7170 8 6 2.1419 -4.3035 2.9273 9 8 1.4424 -4.8945 2.1269 10 6 2.6383 -4.9997 4.1263 11 6 2.4029 -6.2956 4.4783 12 6 1.5798 -7.3050 3.7143 13 6 1.9079 -8.7017 4.2564 14 6 1.8395 -8.6735 5.7863 15 6 3.0057 -7.8467 6.3355 16 7 3.0356 -6.5484 5.6462 17 6 3.6899 -5.4294 6.0716 18 6 4.5076 -5.3202 7.3327 19 8 3.9810 -6.2086 8.3203 20 14 4.4361 -3.5709 7.9697 21 1 3.0260 -3.2075 8.2609 22 1 5.2414 -3.4634 9.2127 23 1 4.9834 -2.6476 6.9433 24 6 3.4926 -4.4412 5.1808 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.5739 1.7565 0.0005 29 1 2.1206 2.2704 -0.8899 30 1 2.1206 2.2704 0.8900 31 1 2.1207 -1.9058 -1.5212 32 1 2.1207 -0.3643 -2.4111 33 1 3.5740 -0.8785 -1.5209 34 1 2.1206 -0.3645 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 2.3374 -2.8345 0.6310 37 1 0.8840 -2.3207 1.5211 38 1 3.0211 -2.5403 3.3551 39 1 0.5193 -7.0968 3.8554 40 1 1.8272 -7.2539 2.6540 41 1 2.9114 -8.9881 3.9416 42 1 1.1846 -9.4212 3.8724 43 1 1.9028 -9.6911 6.1715 44 1 0.8969 -8.2246 6.0995 45 1 3.9426 -8.3750 6.1591 46 1 2.8713 -7.6889 7.4056 47 1 5.5426 -5.5870 7.1189 48 1 3.0614 -6.0296 8.5601 49 1 3.8830 -3.4356 5.2327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_16915396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:00:29 Heat of formation + Delta-G solvation = -86.398057 kcal Electronic energy + Delta-G solvation = -25955.042780 eV Core-core repulsion = 22426.159737 eV Total energy + Delta-G solvation = -3528.883043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72452 -39.95453 -38.06819 -36.89162 -35.95619 -33.43121 -31.54915 -31.11304 -29.54464 -29.04543 -28.42562 -28.39486 -26.55003 -24.66728 -24.36144 -22.81226 -21.75887 -20.91341 -19.55799 -18.85533 -17.39529 -16.88455 -16.70213 -16.41044 -16.25946 -16.10023 -15.53290 -15.39543 -15.10818 -14.87446 -14.69343 -14.53274 -14.35505 -14.24218 -14.04872 -13.94790 -13.88686 -13.72825 -13.29573 -13.27774 -13.20257 -13.07924 -12.80090 -12.75013 -12.42003 -12.34799 -12.18483 -12.07439 -12.01382 -11.79896 -11.76461 -11.07273 -10.82998 -10.79401 -10.74807 -10.40360 -9.83498 -9.48029 -8.95370 0.87499 0.95631 1.32511 1.43295 1.47839 1.65572 1.78609 1.86062 1.87493 1.98173 2.53158 2.79952 2.84145 3.14900 3.46080 3.55981 3.67916 3.79153 3.81437 4.08441 4.25597 4.26772 4.31634 4.40924 4.41825 4.44569 4.59352 4.69702 4.70995 4.71410 4.74928 4.76412 4.77523 4.77621 4.79598 4.84357 4.84698 4.91724 5.04996 5.07054 5.18587 5.20578 5.29432 5.47116 5.56602 5.59264 5.71468 5.80335 6.08643 6.26730 6.31200 6.85342 7.61147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.023 2.977 3 C -0.451 4.451 4 C -0.454 4.454 5 C -0.433 4.433 6 C 0.131 3.869 7 N -0.728 5.728 8 C 0.590 3.410 9 O -0.551 6.551 10 C -0.234 4.234 11 C 0.120 3.880 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.139 4.139 15 C 0.099 3.901 16 N -0.426 5.426 17 C -0.013 4.013 18 C -0.057 4.057 19 O -0.542 6.542 20 Si 0.972 3.028 21 H -0.250 1.250 22 H -0.251 1.251 23 H -0.247 1.247 24 C -0.173 4.173 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.377 0.623 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 0.796 2.671 2.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.218 2.782 3 C -0.558 4.558 4 C -0.561 4.561 5 C -0.517 4.517 6 C 0.008 3.992 7 N -0.380 5.380 8 C 0.379 3.621 9 O -0.430 6.430 10 C -0.244 4.244 11 C 0.002 3.998 12 C -0.093 4.093 13 C -0.167 4.167 14 C -0.177 4.177 15 C -0.022 4.022 16 N -0.102 5.102 17 C -0.122 4.122 18 C -0.167 4.167 19 O -0.347 6.347 20 Si 0.792 3.208 21 H -0.173 1.173 22 H -0.175 1.175 23 H -0.171 1.171 24 C -0.197 4.197 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.124 0.876 47 H 0.139 0.861 48 H 0.225 0.775 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.148 0.656 2.593 2.910 hybrid contribution -0.056 0.031 0.180 0.191 sum 1.092 0.687 2.772 3.058 Atomic orbital electron populations 1.26184 1.20825 1.04653 1.04434 0.78983 0.66952 0.66503 0.65731 1.26131 1.06249 1.18950 1.04505 1.26183 1.06250 1.08291 1.15377 1.26574 1.06564 1.01550 1.17038 1.21006 0.99242 0.91084 0.87855 1.45954 1.54365 1.11836 1.25822 1.17355 0.79256 0.81169 0.84302 1.90756 1.38820 1.66451 1.47021 1.19873 1.10538 0.94521 0.99428 1.20389 0.97257 0.94842 0.87289 1.20507 0.98717 0.90300 0.99755 1.21727 1.02931 0.97301 0.94754 1.21942 0.98178 1.00883 0.96649 1.22308 1.00350 0.81167 0.98346 1.43852 1.38560 1.10074 1.17717 1.20638 1.04267 0.87278 0.99978 1.24811 0.99153 1.07648 0.85082 1.86494 1.32659 1.57057 1.58488 0.85403 0.81945 0.72975 0.80478 1.17278 1.17461 1.17069 1.21758 1.03740 0.98771 0.95433 0.91279 0.91198 0.91048 0.91257 0.91122 0.91267 0.91051 0.91195 0.91272 0.89881 0.89865 0.91401 0.91387 0.76698 0.89391 0.88171 0.91318 0.90216 0.89325 0.90691 0.89923 0.87583 0.86142 0.77521 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.51 8.65 101.05 0.87 1.38 16 2 Si 1.02 -2.76 12.19 -169.99 -2.07 -4.83 16 3 C -0.45 0.78 8.65 101.05 0.87 1.65 16 4 C -0.45 0.50 8.65 101.05 0.87 1.37 16 5 C -0.43 0.84 4.56 37.16 0.17 1.01 16 6 C 0.13 0.10 5.05 -4.04 -0.02 0.08 16 7 N -0.73 -1.33 5.55 -61.43 -0.34 -1.67 16 8 C 0.59 2.73 7.81 -12.59 -0.10 2.63 16 9 O -0.55 -4.12 15.33 5.26 0.08 -4.04 16 10 C -0.23 -0.83 6.28 -103.48 -0.65 -1.48 16 11 C 0.12 0.34 6.57 -81.64 -0.54 -0.20 16 12 C -0.06 -0.09 5.32 -27.55 -0.15 -0.24 16 13 C -0.13 0.09 5.98 -26.45 -0.16 -0.07 16 14 C -0.14 0.25 5.92 -26.57 -0.16 0.10 16 15 C 0.10 -0.11 6.22 -3.69 -0.02 -0.13 16 16 N -0.43 -0.49 3.11 -107.37 -0.33 -0.83 16 17 C -0.01 -0.01 6.14 -81.87 -0.50 -0.51 16 18 C -0.06 0.07 3.00 36.00 0.11 0.18 16 19 O -0.54 0.78 10.28 -35.23 -0.36 0.42 16 20 Si 0.97 -1.50 26.56 -169.99 -4.52 -6.01 16 21 H -0.25 0.16 7.11 56.52 0.40 0.56 16 22 H -0.25 0.08 7.11 56.52 0.40 0.49 16 23 H -0.25 0.35 6.80 56.52 0.38 0.73 16 24 C -0.17 -0.24 9.09 -37.46 -0.34 -0.58 16 25 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 31 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 35 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 36 H 0.07 0.09 7.79 -51.92 -0.40 -0.32 16 37 H 0.07 0.09 7.79 -51.93 -0.40 -0.32 16 38 H 0.40 -0.15 7.60 -40.82 -0.31 -0.46 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.10 0.31 7.40 -51.93 -0.38 -0.08 16 41 H 0.07 -0.02 8.12 -51.93 -0.42 -0.44 16 42 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 43 H 0.09 -0.28 8.14 -51.93 -0.42 -0.71 16 44 H 0.07 -0.11 8.11 -51.93 -0.42 -0.54 16 45 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 46 H 0.11 -0.24 5.67 -51.93 -0.29 -0.54 16 47 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 48 H 0.38 -1.54 8.27 45.56 0.38 -1.17 16 49 H 0.15 -0.11 6.33 -52.49 -0.33 -0.44 16 LS Contribution 386.81 15.07 5.83 5.83 Total: 0.00 -7.26 386.81 -9.49 -16.76 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -8.04 Total: -10.82 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 0.27 Total: 5.19 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -0.68 Total: -2.49 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.28 Total: -3.62 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: -6.59 Total: -10.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -7.26 -9.49 -16.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_16915396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.641 kcal (2) G-P(sol) polarization free energy of solvation -7.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds