Wall clock time and date at job start Mon Mar 8 2021 01:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47003 * 2 1 4 4 C 1.86298 * 109.47357 * 240.00473 * 2 1 3 5 5 C 1.86298 * 109.47151 * 119.99926 * 2 1 3 6 6 C 1.53004 * 109.47085 * 60.00167 * 5 2 1 7 7 N 1.46499 * 109.47198 * 179.97438 * 6 5 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 5 9 9 O 1.21623 * 120.00244 * 359.72094 * 8 7 6 10 10 C 1.47263 * 119.99630 * 179.72408 * 8 7 6 11 11 C 1.36337 * 126.96680 * 179.97438 * 10 8 7 12 12 C 1.50997 * 126.79130 * 0.02648 * 11 10 8 13 13 C 1.53373 * 108.26028 * 164.34400 * 12 11 10 14 14 C 1.53164 * 109.06959 * 48.41403 * 13 12 11 15 15 C 1.53139 * 109.52108 * 290.44769 * 14 13 12 16 16 N 1.35210 * 108.65832 * 179.97438 * 11 10 8 17 17 C 1.36421 * 109.90316 * 359.97438 * 16 11 10 18 18 C 1.50698 * 125.49574 * 180.02562 * 17 16 11 19 19 O 1.42901 * 109.47176 * 329.99458 * 18 17 16 20 20 Si 1.86306 * 109.47310 * 209.99900 * 18 17 16 21 21 H 1.48506 * 109.46869 * 59.99603 * 20 18 17 22 22 H 1.48497 * 109.47315 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46839 * 300.00231 * 20 18 17 24 24 C 1.34500 * 109.01144 * 359.74551 * 17 16 11 25 25 H 1.08994 * 109.47352 * 299.99966 * 1 2 3 26 26 H 1.09005 * 109.47324 * 59.99626 * 1 2 3 27 27 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47299 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47568 * 300.00334 * 3 2 1 30 30 H 1.09008 * 109.47130 * 59.99934 * 3 2 1 31 31 H 1.09004 * 109.46621 * 300.00063 * 4 2 1 32 32 H 1.08996 * 109.47123 * 59.99448 * 4 2 1 33 33 H 1.08998 * 109.47174 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47553 * 300.00519 * 5 2 1 35 35 H 1.09006 * 109.46853 * 180.02562 * 5 2 1 36 36 H 1.09009 * 109.46730 * 59.99699 * 6 5 2 37 37 H 1.08998 * 109.46846 * 300.00244 * 6 5 2 38 38 H 0.97001 * 119.99790 * 359.97438 * 7 6 5 39 39 H 1.08997 * 109.70810 * 283.97433 * 12 11 10 40 40 H 1.09001 * 109.70554 * 44.59730 * 12 11 10 41 41 H 1.09000 * 109.51764 * 288.54789 * 13 12 11 42 42 H 1.09003 * 109.54909 * 168.29798 * 13 12 11 43 43 H 1.08994 * 109.46159 * 170.43675 * 14 13 12 44 44 H 1.09001 * 109.46190 * 50.46252 * 14 13 12 45 45 H 1.08995 * 109.56315 * 291.17563 * 15 14 13 46 46 H 1.08997 * 109.65322 * 170.88526 * 15 14 13 47 47 H 1.08997 * 109.47286 * 89.99927 * 18 17 16 48 48 H 0.96697 * 114.00121 * 300.00466 * 19 18 17 49 49 H 1.07999 * 126.81962 * 180.24195 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9740 -2.3207 1.5211 7 7 2.4628 -3.0115 2.7170 8 6 2.1419 -4.3035 2.9273 9 8 1.4424 -4.8945 2.1269 10 6 2.6383 -4.9997 4.1263 11 6 2.4029 -6.2956 4.4783 12 6 1.5798 -7.3050 3.7143 13 6 1.9079 -8.7017 4.2564 14 6 1.8395 -8.6735 5.7863 15 6 3.0057 -7.8467 6.3355 16 7 3.0356 -6.5484 5.6462 17 6 3.6899 -5.4294 6.0716 18 6 4.5076 -5.3202 7.3327 19 8 3.9810 -6.2086 8.3203 20 14 4.4361 -3.5709 7.9697 21 1 3.0260 -3.2075 8.2609 22 1 5.2414 -3.4634 9.2127 23 1 4.9834 -2.6476 6.9433 24 6 3.4926 -4.4412 5.1808 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.5739 1.7565 0.0005 29 1 2.1206 2.2704 -0.8899 30 1 2.1206 2.2704 0.8900 31 1 2.1207 -1.9058 -1.5212 32 1 2.1207 -0.3643 -2.4111 33 1 3.5740 -0.8785 -1.5209 34 1 2.1206 -0.3645 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 2.3374 -2.8345 0.6310 37 1 0.8840 -2.3207 1.5211 38 1 3.0211 -2.5403 3.3551 39 1 0.5193 -7.0968 3.8554 40 1 1.8272 -7.2539 2.6540 41 1 2.9114 -8.9881 3.9416 42 1 1.1846 -9.4212 3.8724 43 1 1.9028 -9.6911 6.1715 44 1 0.8969 -8.2246 6.0995 45 1 3.9426 -8.3750 6.1591 46 1 2.8713 -7.6889 7.4056 47 1 5.5426 -5.5870 7.1189 48 1 3.0614 -6.0296 8.5601 49 1 3.8830 -3.4356 5.2327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_16915396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:00:28 Heat of formation + Delta-G solvation = -80.940999 kcal Electronic energy + Delta-G solvation = -25954.806144 eV Core-core repulsion = 22426.159737 eV Total energy + Delta-G solvation = -3528.646407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.79518 -40.22716 -37.96940 -36.87370 -36.15599 -33.51268 -31.59865 -31.12898 -29.48517 -29.02261 -28.30624 -28.29311 -26.53762 -24.66059 -24.42145 -22.89169 -21.76164 -21.07964 -19.59320 -18.86369 -17.46033 -17.01637 -16.74321 -16.48354 -16.29609 -16.06283 -15.50824 -15.34944 -15.12136 -14.94288 -14.67860 -14.64537 -14.41110 -14.14224 -14.00622 -13.90344 -13.81797 -13.70437 -13.26929 -13.17535 -13.13670 -12.97801 -12.76980 -12.73434 -12.40694 -12.34019 -12.12826 -12.00151 -11.96661 -11.77638 -11.71301 -11.17774 -10.71126 -10.69409 -10.65042 -10.51807 -10.07509 -9.56379 -9.06057 0.70927 0.97249 1.34438 1.53901 1.57831 1.74258 1.87505 2.01625 2.03084 2.04913 2.52999 2.55597 2.82650 3.31756 3.48485 3.59857 3.70199 3.81019 3.82787 4.07893 4.28183 4.28676 4.35234 4.35807 4.41020 4.55023 4.62402 4.70075 4.75801 4.79672 4.82082 4.83138 4.83978 4.86489 4.87537 4.89194 4.89509 4.96591 5.01256 5.07616 5.14218 5.21958 5.34097 5.56867 5.59827 5.66801 5.68650 5.69807 6.02137 6.22389 6.53144 6.69101 7.36017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.098 2.902 3 C -0.461 4.461 4 C -0.473 4.473 5 C -0.434 4.434 6 C 0.124 3.876 7 N -0.718 5.718 8 C 0.581 3.419 9 O -0.591 6.591 10 C -0.260 4.260 11 C 0.104 3.896 12 C -0.053 4.053 13 C -0.125 4.125 14 C -0.134 4.134 15 C 0.094 3.906 16 N -0.425 5.425 17 C -0.012 4.012 18 C -0.053 4.053 19 O -0.548 6.548 20 Si 1.007 2.993 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.246 1.246 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.410 0.590 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.389 0.611 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 1.126 4.089 4.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.288 2.712 3 C -0.568 4.568 4 C -0.579 4.579 5 C -0.517 4.517 6 C 0.001 3.999 7 N -0.370 5.370 8 C 0.371 3.629 9 O -0.474 6.474 10 C -0.269 4.269 11 C -0.014 4.014 12 C -0.091 4.091 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.025 4.025 16 N -0.101 5.101 17 C -0.121 4.121 18 C -0.163 4.163 19 O -0.355 6.355 20 Si 0.828 3.172 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.170 1.170 24 C -0.203 4.203 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.246 0.754 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.139 0.861 47 H 0.148 0.852 48 H 0.238 0.762 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.060 0.996 4.018 4.623 hybrid contribution -0.352 -0.077 -0.260 0.444 sum 1.708 0.919 3.758 4.229 Atomic orbital electron populations 1.26435 1.22903 1.04024 1.04462 0.77836 0.64568 0.65074 0.63715 1.26242 1.06551 1.19412 1.04590 1.26438 1.06506 1.08099 1.16808 1.26666 1.07346 0.99524 1.18211 1.21126 0.98928 0.92621 0.87186 1.45963 1.53763 1.11096 1.26177 1.17683 0.78918 0.81889 0.84381 1.90721 1.40782 1.67470 1.48429 1.20031 1.11790 0.95265 0.99837 1.20561 0.97773 0.94987 0.88122 1.20429 0.98181 0.91860 0.98631 1.21705 1.02959 0.95784 0.95804 1.21936 0.97818 1.01905 0.95462 1.22521 1.00758 0.80295 0.98952 1.44061 1.37888 1.10929 1.17173 1.21035 1.03759 0.86921 1.00396 1.24884 0.99220 1.08040 0.84121 1.86471 1.33741 1.57117 1.58170 0.84897 0.80527 0.72375 0.79388 1.18714 1.19153 1.16971 1.21992 1.03565 0.99883 0.94908 0.91103 0.91328 0.92008 0.90949 0.91323 0.90938 0.92025 0.91322 0.91129 0.88714 0.88742 0.92280 0.92207 0.75367 0.90117 0.90334 0.91606 0.89244 0.87287 0.90870 0.89646 0.86120 0.85222 0.76179 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.74 8.65 113.37 0.98 1.72 16 2 Si 1.10 -5.97 12.19 68.60 0.84 -5.13 16 3 C -0.46 1.96 8.65 113.37 0.98 2.94 16 4 C -0.47 0.69 8.65 113.37 0.98 1.67 16 5 C -0.43 1.85 4.56 71.98 0.33 2.18 16 6 C 0.12 0.33 5.05 86.38 0.44 0.77 16 7 N -0.72 -3.36 5.55 -466.51 -2.59 -5.95 16 8 C 0.58 6.56 7.81 86.62 0.68 7.24 16 9 O -0.59 -10.64 15.33 -4.10 -0.06 -10.70 16 10 C -0.26 -2.19 6.28 -19.12 -0.12 -2.31 16 11 C 0.10 0.72 6.57 41.69 0.27 1.00 16 12 C -0.05 -0.29 5.32 30.07 0.16 -0.13 16 13 C -0.12 0.10 5.98 30.77 0.18 0.29 16 14 C -0.13 0.57 5.92 30.70 0.18 0.75 16 15 C 0.09 -0.28 6.22 86.33 0.54 0.25 16 16 N -0.42 -0.99 3.11 -493.60 -1.54 -2.53 16 17 C -0.01 -0.01 6.14 40.99 0.25 0.24 16 18 C -0.05 0.19 3.00 71.24 0.21 0.40 16 19 O -0.55 2.33 10.28 -148.98 -1.53 0.79 16 20 Si 1.01 -4.00 26.56 68.60 1.82 -2.18 16 21 H -0.26 0.47 7.11 99.48 0.71 1.18 16 22 H -0.27 0.34 7.11 99.48 0.71 1.05 16 23 H -0.25 1.04 6.80 99.48 0.68 1.71 16 24 C -0.18 -0.51 9.09 23.64 0.21 -0.30 16 25 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 26 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 27 H 0.06 0.03 7.79 -2.38 -0.02 0.01 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 31 H 0.06 0.03 7.79 -2.38 -0.02 0.02 16 32 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 33 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 35 H 0.09 -0.56 7.96 -2.38 -0.02 -0.58 16 36 H 0.06 0.26 7.79 -2.38 -0.02 0.24 16 37 H 0.06 0.26 7.79 -2.39 -0.02 0.24 16 38 H 0.41 -0.25 7.60 -92.71 -0.70 -0.95 16 39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 0.74 7.40 -2.39 -0.02 0.72 16 41 H 0.07 -0.01 8.12 -2.39 -0.02 -0.03 16 42 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.07 -0.25 8.11 -2.39 -0.02 -0.27 16 45 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.12 -0.72 5.67 -2.39 -0.01 -0.74 16 47 H 0.13 -0.68 7.96 -2.39 -0.02 -0.70 16 48 H 0.39 -3.69 8.27 -74.06 -0.61 -4.31 16 49 H 0.17 -0.36 6.33 -2.91 -0.02 -0.38 16 Total: 0.00 -18.38 386.81 3.56 -14.82 By element: Atomic # 1 Polarization: -6.18 SS G_CDS: 0.34 Total: -5.83 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.28 Total: 16.72 kcal Atomic # 7 Polarization: -4.36 SS G_CDS: -4.13 Total: -8.48 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.59 Total: -9.91 kcal Atomic # 14 Polarization: -9.97 SS G_CDS: 2.66 Total: -7.31 kcal Total: -18.38 3.56 -14.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_16915396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.124 kcal (2) G-P(sol) polarization free energy of solvation -18.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds