Wall clock time and date at job start Mon Mar 8 2021 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47433 * 2 1 4 4 C 1.86303 * 109.47165 * 239.99729 * 2 1 3 5 5 C 1.86301 * 109.46996 * 119.99974 * 2 1 3 6 6 C 1.53006 * 109.47122 * 59.99736 * 5 2 1 7 7 N 1.46496 * 109.46995 * 180.02562 * 6 5 2 8 8 C 1.34775 * 119.99642 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00300 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99773 * 180.02562 * 8 7 6 11 11 F 1.39900 * 109.47515 * 59.99807 * 10 8 7 12 12 F 1.39897 * 109.47274 * 299.99712 * 10 8 7 13 13 O 1.42905 * 109.47264 * 179.97438 * 10 8 7 14 14 C 1.35897 * 117.00093 * 179.97438 * 13 10 8 15 15 C 1.38737 * 120.05547 * 359.72645 * 14 13 10 16 16 C 1.38149 * 119.94020 * 179.74326 * 15 14 13 17 17 C 1.38269 * 120.05599 * 0.51033 * 16 15 14 18 18 C 1.50701 * 119.94263 * 179.74419 * 17 16 15 19 19 O 1.42895 * 109.47045 * 245.01911 * 18 17 16 20 20 Si 1.86303 * 109.46953 * 5.02003 * 18 17 16 21 21 H 1.48498 * 109.47146 * 60.00114 * 20 18 17 22 22 H 1.48501 * 109.46717 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47229 * 299.99757 * 20 18 17 24 24 C 1.38265 * 120.10911 * 359.76477 * 17 16 15 25 25 C 1.38141 * 120.06229 * 359.97438 * 24 17 16 26 26 H 1.08992 * 109.47216 * 300.00424 * 1 2 3 27 27 H 1.09004 * 109.46722 * 59.99672 * 1 2 3 28 28 H 1.08992 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47566 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46936 * 299.99887 * 3 2 1 31 31 H 1.09001 * 109.47083 * 59.99601 * 3 2 1 32 32 H 1.08992 * 109.47172 * 300.00252 * 4 2 1 33 33 H 1.09004 * 109.46812 * 60.00653 * 4 2 1 34 34 H 1.08996 * 109.47221 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46900 * 300.00019 * 5 2 1 36 36 H 1.08996 * 109.46889 * 179.97438 * 5 2 1 37 37 H 1.08998 * 109.46509 * 60.00349 * 6 5 2 38 38 H 1.08996 * 109.46884 * 300.00672 * 6 5 2 39 39 H 0.96998 * 120.00192 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.02659 * 359.97438 * 15 14 13 41 41 H 1.07999 * 119.97009 * 180.23164 * 16 15 14 42 42 H 1.08999 * 109.46655 * 125.01749 * 18 17 16 43 43 H 0.96706 * 113.99797 * 60.00411 * 19 18 17 44 44 H 1.08004 * 119.96780 * 179.97438 * 24 17 16 45 45 H 1.07997 * 120.03246 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9739 -2.3208 1.5212 7 7 2.4617 -3.0111 2.7177 8 6 2.1364 -4.3016 2.9307 9 8 1.4394 -4.8911 2.1322 10 6 2.6377 -5.0116 4.1618 11 9 2.1700 -4.3522 5.3036 12 9 4.0367 -5.0112 4.1633 13 8 2.1614 -6.3590 4.1618 14 6 2.5261 -7.1423 5.2107 15 6 3.3307 -6.6265 6.2164 16 6 3.6956 -7.4234 7.2842 17 6 3.2685 -8.7370 7.3459 18 6 3.6729 -9.6056 8.5091 19 8 4.5071 -10.6680 8.0428 20 14 4.6083 -8.5817 9.7530 21 1 3.7414 -7.4777 10.2376 22 1 5.0063 -9.4376 10.8995 23 1 5.8224 -8.0137 9.1139 24 6 2.4713 -9.2550 6.3420 25 6 2.0991 -8.4608 5.2747 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1208 2.2702 -0.8900 31 1 2.1208 2.2703 0.8900 32 1 2.1207 -1.9059 -1.5211 33 1 2.1208 -0.3644 -2.4111 34 1 3.5740 -0.8779 -1.5213 35 1 2.1206 -0.3644 2.4111 36 1 3.5740 -0.8786 1.5209 37 1 2.3373 -2.8345 0.6312 38 1 0.8839 -2.3207 1.5211 39 1 3.0194 -2.5398 3.3561 40 1 3.6683 -5.6019 6.1663 41 1 4.3189 -7.0213 8.0693 42 1 2.7817 -10.0225 8.9782 43 1 5.3205 -10.3697 7.6131 44 1 2.1392 -10.2815 6.3923 45 1 1.4767 -8.8660 4.4906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_4549640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:06:42 Heat of formation + Delta-G solvation = -216.403785 kcal Electronic energy + Delta-G solvation = -28293.877432 eV Core-core repulsion = 23878.267923 eV Total energy + Delta-G solvation = -4415.609509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.132 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.92416 -48.89595 -41.45315 -41.04256 -39.30835 -37.27577 -36.69441 -32.51349 -32.20131 -31.81156 -29.41358 -28.66069 -28.29588 -28.28913 -26.29688 -24.69545 -23.61183 -22.72852 -22.34697 -20.63437 -19.89028 -19.72920 -18.58773 -17.72238 -17.43414 -17.00121 -16.77018 -16.49271 -16.26296 -15.97420 -15.85398 -15.49498 -15.40135 -15.26959 -15.14761 -15.06608 -14.69106 -14.40550 -14.26252 -14.18402 -13.95646 -13.84865 -13.73918 -13.65156 -13.19356 -13.14204 -13.04914 -12.97031 -12.89581 -12.49209 -12.42380 -12.24124 -12.12730 -11.83876 -11.61257 -10.74188 -10.70164 -10.69648 -10.50089 -10.42970 -10.20996 -9.61106 -0.00273 0.12487 0.46665 0.63793 1.17036 1.44555 1.51706 1.64024 1.81583 1.91188 2.00684 2.01386 2.11740 2.43701 2.67828 2.92148 3.20293 3.47785 3.51868 3.64462 3.74411 3.98647 4.05996 4.18230 4.18912 4.39244 4.58709 4.61714 4.79940 4.80804 4.82845 4.84960 4.87730 4.87980 4.88606 4.89474 4.90443 4.98854 5.01313 5.30378 5.32678 5.38140 5.60714 5.68687 5.69396 5.80887 5.88775 6.46882 6.70034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.110 2.890 3 C -0.467 4.467 4 C -0.477 4.477 5 C -0.437 4.437 6 C 0.115 3.885 7 N -0.683 5.683 8 C 0.510 3.490 9 O -0.511 6.511 10 C 0.432 3.568 11 F -0.172 7.172 12 F -0.172 7.172 13 O -0.305 6.305 14 C 0.084 3.916 15 C -0.195 4.195 16 C -0.091 4.091 17 C -0.141 4.141 18 C -0.073 4.073 19 O -0.550 6.550 20 Si 0.976 3.024 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.251 1.251 24 C -0.053 4.053 25 C -0.135 4.135 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.422 0.578 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.130 0.870 43 H 0.389 0.611 44 H 0.157 0.843 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 4.807 0.723 5.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.582 4.582 2 Si 1.299 2.701 3 C -0.573 4.573 4 C -0.582 4.582 5 C -0.520 4.520 6 C -0.006 4.006 7 N -0.338 5.338 8 C 0.287 3.713 9 O -0.385 6.385 10 C 0.354 3.646 11 F -0.154 7.154 12 F -0.154 7.154 13 O -0.222 6.222 14 C 0.042 3.958 15 C -0.214 4.214 16 C -0.109 4.109 17 C -0.142 4.142 18 C -0.184 4.184 19 O -0.358 6.358 20 Si 0.800 3.200 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.175 1.175 24 C -0.070 4.070 25 C -0.153 4.153 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.260 0.740 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.238 0.762 44 H 0.175 0.825 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.605 4.509 0.853 4.862 hybrid contribution 0.530 0.484 -0.120 0.728 sum 2.134 4.993 0.733 5.480 Atomic orbital electron populations 1.26478 1.22994 1.04252 1.04481 0.77659 0.64290 0.64739 0.63421 1.26313 1.06585 1.19902 1.04517 1.26477 1.06606 1.08307 1.16810 1.26712 1.07978 0.98723 1.18604 1.21587 1.00257 0.92859 0.85887 1.46151 1.51733 1.08902 1.26979 1.19480 0.82538 0.84132 0.85109 1.90847 1.36762 1.66056 1.44825 1.21882 0.75769 0.82055 0.84859 1.93189 1.88136 1.80932 1.53129 1.93186 1.29514 1.96114 1.96544 1.86651 1.70642 1.20369 1.44499 1.19270 0.97562 0.91832 0.87182 1.21568 1.01944 1.01974 0.95884 1.21053 0.98847 0.93534 0.97430 1.20521 1.00345 0.94580 0.98725 1.24962 1.00263 0.94368 0.98805 1.86498 1.36615 1.32597 1.80041 0.85314 0.79579 0.77590 0.77497 1.18200 1.19786 1.17513 1.21109 0.94482 1.00332 0.91125 1.20763 1.03148 0.90192 1.01205 0.91060 0.91522 0.91637 0.90989 0.91520 0.90994 0.91633 0.91522 0.91056 0.88018 0.88014 0.90261 0.90275 0.73965 0.84411 0.84104 0.85196 0.76171 0.82496 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 2.46 8.65 113.37 0.98 3.44 16 2 Si 1.11 -10.46 12.19 68.60 0.84 -9.62 16 3 C -0.47 3.18 8.65 113.37 0.98 4.16 16 4 C -0.48 2.47 8.65 113.37 0.98 3.45 16 5 C -0.44 4.31 4.56 71.98 0.33 4.64 16 6 C 0.11 -0.49 5.05 86.38 0.44 -0.05 16 7 N -0.68 1.47 5.56 -463.07 -2.57 -1.10 16 8 C 0.51 2.73 7.34 87.66 0.64 3.38 16 9 O -0.51 -6.41 16.50 16.01 0.26 -6.15 16 10 C 0.43 2.29 2.05 71.24 0.15 2.44 16 11 F -0.17 -0.63 15.31 44.97 0.69 0.06 16 12 F -0.17 -0.61 15.27 44.97 0.69 0.08 16 13 O -0.30 -2.89 9.60 -73.35 -0.70 -3.59 16 14 C 0.08 0.60 6.48 22.51 0.15 0.74 16 15 C -0.20 -0.91 8.26 22.37 0.18 -0.72 16 16 C -0.09 -0.16 8.66 22.26 0.19 0.03 16 17 C -0.14 -0.09 5.35 -19.85 -0.11 -0.19 16 18 C -0.07 0.15 2.80 71.24 0.20 0.35 16 19 O -0.55 0.40 12.83 -148.98 -1.91 -1.51 16 20 Si 0.98 -1.85 25.13 68.60 1.72 -0.13 16 21 H -0.26 0.14 7.11 99.48 0.71 0.85 16 22 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 23 H -0.25 0.51 7.04 99.48 0.70 1.21 16 24 C -0.05 -0.06 9.68 22.25 0.22 0.16 16 25 C -0.13 -0.55 9.99 22.37 0.22 -0.33 16 26 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.06 -0.26 7.79 -2.39 -0.02 -0.27 16 29 H 0.07 -0.50 7.96 -2.39 -0.02 -0.51 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.10 -1.19 7.96 -2.39 -0.02 -1.21 16 36 H 0.10 -1.19 7.96 -2.39 -0.02 -1.21 16 37 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 38 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 39 H 0.42 -3.19 8.47 -92.71 -0.79 -3.98 16 40 H 0.14 0.43 5.10 -2.91 -0.01 0.41 16 41 H 0.14 -0.24 4.86 -2.91 -0.01 -0.25 16 42 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 43 H 0.39 -2.63 8.70 -74.05 -0.64 -3.28 16 44 H 0.16 -0.39 8.06 -2.91 -0.02 -0.42 16 45 H 0.15 0.30 8.06 -2.91 -0.02 0.28 16 Total: 0.00 -17.22 383.87 4.91 -12.31 By element: Atomic # 1 Polarization: -12.18 SS G_CDS: 0.34 Total: -11.84 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 5.55 Total: 21.48 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -2.57 Total: -1.10 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -2.35 Total: -11.25 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 1.38 Total: 0.14 kcal Atomic # 14 Polarization: -12.31 SS G_CDS: 2.56 Total: -9.75 kcal Total: -17.22 4.91 -12.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_4549640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.091 kcal (2) G-P(sol) polarization free energy of solvation -17.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds