Wall clock time and date at job start Mon Mar 8 2021 01:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86303 * 109.47491 * 2 1 4 4 C 1.86305 * 109.47181 * 240.00012 * 2 1 3 5 5 C 1.86296 * 109.47490 * 120.00095 * 2 1 3 6 6 C 1.53005 * 109.47037 * 59.99765 * 5 2 1 7 7 N 1.46501 * 109.46985 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00005 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99778 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00211 * 180.02562 * 8 7 6 11 11 O 1.42900 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.35914 * 116.99871 * 180.02562 * 11 10 8 13 13 C 1.38678 * 120.06015 * 359.97438 * 12 11 10 14 14 C 1.38181 * 119.95680 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.07059 * 0.03195 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 22 22 C 1.38279 * 120.12009 * 0.24319 * 15 14 13 23 23 C 1.38197 * 120.04539 * 359.46139 * 22 15 14 24 24 Br 1.89099 * 120.04178 * 180.25362 * 23 22 15 25 25 H 1.09002 * 109.46654 * 299.99706 * 1 2 3 26 26 H 1.08998 * 109.47081 * 59.99663 * 1 2 3 27 27 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47219 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46717 * 300.00806 * 3 2 1 30 30 H 1.09002 * 109.46690 * 59.99533 * 3 2 1 31 31 H 1.09002 * 109.46610 * 300.00216 * 4 2 1 32 32 H 1.08999 * 109.46646 * 59.99427 * 4 2 1 33 33 H 1.08998 * 109.47140 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47334 * 299.99782 * 5 2 1 35 35 H 1.08998 * 109.47407 * 180.02562 * 5 2 1 36 36 H 1.08994 * 109.46953 * 60.00496 * 6 5 2 37 37 H 1.09001 * 109.46746 * 299.99899 * 6 5 2 38 38 H 0.97000 * 120.00017 * 0.02562 * 7 6 5 39 39 H 1.08994 * 109.46996 * 60.00301 * 10 8 7 40 40 H 1.09001 * 109.46965 * 299.99543 * 10 8 7 41 41 H 1.07999 * 120.02210 * 359.96235 * 13 12 11 42 42 H 1.07999 * 119.96701 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 44 44 H 0.96709 * 113.99981 * 180.02562 * 17 16 15 45 45 H 1.07998 * 119.98018 * 179.72434 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9740 -2.3208 1.5211 7 7 2.4620 -3.0112 2.7175 8 6 2.1359 -4.3013 2.9311 9 8 1.4389 -4.8908 2.1326 10 6 2.6373 -5.0114 4.1622 11 8 2.1610 -6.3587 4.1621 12 6 2.5250 -7.1419 5.2116 13 6 3.3242 -6.6246 6.2200 14 6 3.6925 -7.4226 7.2863 15 6 3.2657 -8.7360 7.3485 16 6 3.6697 -9.6038 8.5125 17 8 5.0945 -9.7003 8.5627 18 14 2.9386 -11.3044 8.3023 19 1 3.3371 -12.1598 9.4489 20 1 1.4579 -11.2038 8.2503 21 1 3.4384 -11.9056 7.0397 22 6 2.4735 -9.2566 6.3418 23 6 2.0971 -8.4611 5.2762 24 35 1.0077 -9.1711 3.9032 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 2.1206 -1.9059 -1.5211 32 1 2.1205 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5214 34 1 2.1208 -0.3644 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 2.3374 -2.8345 0.6311 37 1 0.8840 -2.3207 1.5212 38 1 3.0191 -2.5396 3.3563 39 1 2.2736 -4.4972 5.0517 40 1 3.7273 -5.0118 4.1627 41 1 3.6587 -5.5989 6.1719 42 1 4.3146 -7.0198 8.0719 43 1 3.3025 -9.1628 9.4392 44 1 5.4265 -10.2457 9.2891 45 1 2.1450 -10.2843 6.3904 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:15:07 Heat of formation + Delta-G solvation = -119.400474 kcal Electronic energy + Delta-G solvation = -24704.171639 eV Core-core repulsion = 20891.858458 eV Total energy + Delta-G solvation = -3812.313181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 389.062 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62844 -40.52138 -39.04067 -37.36219 -36.25491 -33.47748 -32.38107 -31.94217 -30.30699 -29.63509 -28.99827 -28.49955 -28.47088 -26.35451 -24.30406 -23.41688 -22.26382 -21.63183 -19.56361 -18.66215 -18.31708 -17.58379 -17.23508 -16.98608 -16.68179 -16.30236 -16.26301 -15.52443 -15.03837 -15.01220 -14.64511 -14.51204 -14.33289 -14.13905 -14.10195 -14.00936 -13.88698 -13.83690 -13.71330 -13.36830 -13.27878 -13.15591 -12.96926 -12.58939 -12.47489 -12.32478 -12.19101 -12.05822 -11.82970 -11.70126 -11.26914 -11.00919 -10.91466 -10.87892 -10.63884 -10.43916 -10.13331 -9.95167 -9.24296 -0.00554 0.09392 0.74990 1.07864 1.29963 1.38225 1.45775 1.53462 1.70015 1.78394 1.78689 1.86959 2.38012 2.45200 2.65557 3.26126 3.46601 3.61558 3.73250 3.73933 3.85189 3.90703 3.98091 4.04096 4.08377 4.26817 4.33356 4.56680 4.59038 4.64404 4.65302 4.69473 4.70431 4.71833 4.74664 4.78825 4.86345 5.01498 5.06247 5.29146 5.31874 5.40118 5.42703 5.50036 5.52092 6.03375 6.38590 6.49317 7.13568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.026 2.974 3 C -0.451 4.451 4 C -0.455 4.455 5 C -0.433 4.433 6 C 0.130 3.870 7 N -0.726 5.726 8 C 0.512 3.488 9 O -0.509 6.509 10 C 0.037 3.963 11 O -0.274 6.274 12 C 0.161 3.839 13 C -0.204 4.204 14 C -0.031 4.031 15 C -0.107 4.107 16 C -0.074 4.074 17 O -0.545 6.545 18 Si 0.930 3.070 19 H -0.252 1.252 20 H -0.245 1.245 21 H -0.243 1.243 22 C -0.056 4.056 23 C -0.118 4.118 24 Br -0.025 7.025 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.402 0.598 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.382 0.618 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 4.848 4.709 7.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.221 2.779 3 C -0.559 4.559 4 C -0.562 4.562 5 C -0.517 4.517 6 C 0.007 3.993 7 N -0.382 5.382 8 C 0.296 3.704 9 O -0.382 6.382 10 C -0.042 4.042 11 O -0.185 6.185 12 C 0.112 3.888 13 C -0.224 4.224 14 C -0.049 4.049 15 C -0.109 4.109 16 C -0.184 4.184 17 O -0.351 6.351 18 Si 0.752 3.248 19 H -0.176 1.176 20 H -0.169 1.169 21 H -0.166 1.166 22 C -0.076 4.076 23 C -0.198 4.198 24 Br 0.061 6.939 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.098 0.902 44 H 0.230 0.770 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.763 3.637 2.792 4.912 hybrid contribution 0.954 0.674 1.370 1.800 sum 2.717 4.311 4.162 6.579 Atomic orbital electron populations 1.26197 1.20815 1.04677 1.04550 0.78951 0.66919 0.66548 0.65526 1.26131 1.06269 1.18879 1.04596 1.26199 1.06277 1.08294 1.15474 1.26583 1.06682 1.01117 1.17333 1.21112 0.99569 0.91258 0.87325 1.46025 1.54440 1.11338 1.26349 1.19992 0.81213 0.82251 0.86984 1.90806 1.35996 1.65511 1.45901 1.22573 1.00665 0.82500 0.98478 1.86280 1.69750 1.21492 1.40987 1.18616 0.93344 0.89613 0.87187 1.21275 1.03458 1.01685 0.95971 1.20905 0.95107 0.92245 0.96677 1.19137 1.00615 0.94941 0.96161 1.24575 0.86674 1.08647 0.98523 1.86494 1.18402 1.74609 1.55569 0.85957 0.80739 0.75976 0.82097 1.17576 1.16888 1.16617 1.20800 0.96341 0.99052 0.91368 1.20912 1.06725 0.93577 0.98597 1.96799 1.65264 1.84445 1.47397 0.91245 0.91087 0.91069 0.91225 0.91043 0.91229 0.91067 0.91094 0.91238 0.89696 0.89686 0.90980 0.90991 0.76399 0.88536 0.88533 0.84218 0.84386 0.90214 0.77049 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.03 -3.85 12.19 -169.99 -2.07 -5.92 16 3 C -0.45 1.18 8.65 101.05 0.87 2.05 16 4 C -0.46 0.86 8.65 101.05 0.87 1.74 16 5 C -0.43 1.61 4.56 37.16 0.17 1.77 16 6 C 0.13 -0.15 5.05 -4.04 -0.02 -0.17 16 7 N -0.73 1.02 5.56 -60.29 -0.33 0.69 16 8 C 0.51 0.89 7.91 -10.98 -0.09 0.81 16 9 O -0.51 -3.47 16.50 -14.36 -0.24 -3.71 16 10 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 11 O -0.27 -0.90 9.01 -39.38 -0.35 -1.26 16 12 C 0.16 0.40 6.68 -39.20 -0.26 0.14 16 13 C -0.20 0.02 9.04 -39.44 -0.36 -0.34 16 14 C -0.03 0.00 9.60 -39.60 -0.38 -0.38 16 15 C -0.11 -0.11 5.42 -104.60 -0.57 -0.68 16 16 C -0.07 0.07 2.81 36.01 0.10 0.17 16 17 O -0.54 0.37 12.74 -35.23 -0.45 -0.08 16 18 Si 0.93 -0.50 25.07 -169.99 -4.26 -4.76 16 19 H -0.25 0.17 7.11 56.52 0.40 0.57 16 20 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 21 H -0.24 -0.27 7.11 56.52 0.40 0.13 16 22 C -0.06 -0.12 8.40 -39.58 -0.33 -0.46 16 23 C -0.12 -0.41 6.24 -39.37 -0.25 -0.66 16 24 Br -0.02 -0.11 33.16 -68.01 -2.26 -2.36 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 28 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.08 -0.37 7.96 -51.93 -0.41 -0.78 16 35 H 0.08 -0.36 7.96 -51.93 -0.41 -0.78 16 36 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 37 H 0.07 -0.03 7.79 -51.93 -0.40 -0.43 16 38 H 0.40 -1.87 8.47 -40.82 -0.35 -2.22 16 39 H 0.10 -0.35 7.66 -51.93 -0.40 -0.74 16 40 H 0.10 -0.33 7.66 -51.93 -0.40 -0.72 16 41 H 0.14 -0.45 6.30 -52.49 -0.33 -0.78 16 42 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 43 H 0.08 -0.24 7.96 -51.93 -0.41 -0.66 16 44 H 0.38 -1.90 8.74 45.56 0.40 -1.50 16 45 H 0.14 0.18 4.87 -52.49 -0.26 -0.07 16 LS Contribution 395.00 15.07 5.95 5.95 Total: 0.00 -9.68 395.00 -9.48 -19.16 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: -6.30 Total: -13.63 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 0.83 Total: 5.92 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -0.33 Total: 0.69 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -1.04 Total: -5.04 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: -6.33 Total: -10.69 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.26 Total: -2.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -9.68 -9.48 -19.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.236 kcal (2) G-P(sol) polarization free energy of solvation -9.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds