Wall clock time and date at job start Mon Mar 8 2021 01:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86303 * 109.47491 * 2 1 4 4 C 1.86305 * 109.47181 * 240.00012 * 2 1 3 5 5 C 1.86296 * 109.47490 * 120.00095 * 2 1 3 6 6 C 1.53005 * 109.47037 * 59.99765 * 5 2 1 7 7 N 1.46501 * 109.46985 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00005 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99778 * 0.02562 * 8 7 6 10 10 C 1.50704 * 120.00211 * 180.02562 * 8 7 6 11 11 O 1.42900 * 109.46992 * 180.02562 * 10 8 7 12 12 C 1.35914 * 116.99871 * 180.02562 * 11 10 8 13 13 C 1.38678 * 120.06015 * 359.97438 * 12 11 10 14 14 C 1.38181 * 119.95680 * 179.97438 * 13 12 11 15 15 C 1.38241 * 120.07059 * 0.03195 * 14 13 12 16 16 C 1.50706 * 119.93825 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.46938 * 299.99525 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 179.97438 * 16 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 22 22 C 1.38279 * 120.12009 * 0.24319 * 15 14 13 23 23 C 1.38197 * 120.04539 * 359.46139 * 22 15 14 24 24 Br 1.89099 * 120.04178 * 180.25362 * 23 22 15 25 25 H 1.09002 * 109.46654 * 299.99706 * 1 2 3 26 26 H 1.08998 * 109.47081 * 59.99663 * 1 2 3 27 27 H 1.08994 * 109.46946 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47219 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46717 * 300.00806 * 3 2 1 30 30 H 1.09002 * 109.46690 * 59.99533 * 3 2 1 31 31 H 1.09002 * 109.46610 * 300.00216 * 4 2 1 32 32 H 1.08999 * 109.46646 * 59.99427 * 4 2 1 33 33 H 1.08998 * 109.47140 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47334 * 299.99782 * 5 2 1 35 35 H 1.08998 * 109.47407 * 180.02562 * 5 2 1 36 36 H 1.08994 * 109.46953 * 60.00496 * 6 5 2 37 37 H 1.09001 * 109.46746 * 299.99899 * 6 5 2 38 38 H 0.97000 * 120.00017 * 0.02562 * 7 6 5 39 39 H 1.08994 * 109.46996 * 60.00301 * 10 8 7 40 40 H 1.09001 * 109.46965 * 299.99543 * 10 8 7 41 41 H 1.07999 * 120.02210 * 359.96235 * 13 12 11 42 42 H 1.07999 * 119.96701 * 180.02562 * 14 13 12 43 43 H 1.09000 * 109.47161 * 59.99791 * 16 15 14 44 44 H 0.96709 * 113.99981 * 180.02562 * 17 16 15 45 45 H 1.07998 * 119.98018 * 179.72434 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5211 6 6 1.9740 -2.3208 1.5211 7 7 2.4620 -3.0112 2.7175 8 6 2.1359 -4.3013 2.9311 9 8 1.4389 -4.8908 2.1326 10 6 2.6373 -5.0114 4.1622 11 8 2.1610 -6.3587 4.1621 12 6 2.5250 -7.1419 5.2116 13 6 3.3242 -6.6246 6.2200 14 6 3.6925 -7.4226 7.2863 15 6 3.2657 -8.7360 7.3485 16 6 3.6697 -9.6038 8.5125 17 8 5.0945 -9.7003 8.5627 18 14 2.9386 -11.3044 8.3023 19 1 3.3371 -12.1598 9.4489 20 1 1.4579 -11.2038 8.2503 21 1 3.4384 -11.9056 7.0397 22 6 2.4735 -9.2566 6.3418 23 6 2.0971 -8.4611 5.2762 24 35 1.0077 -9.1711 3.9032 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1206 2.2703 -0.8899 30 1 2.1207 2.2703 0.8900 31 1 2.1206 -1.9059 -1.5211 32 1 2.1205 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5214 34 1 2.1208 -0.3644 2.4111 35 1 3.5740 -0.8778 1.5213 36 1 2.3374 -2.8345 0.6311 37 1 0.8840 -2.3207 1.5212 38 1 3.0191 -2.5396 3.3563 39 1 2.2736 -4.4972 5.0517 40 1 3.7273 -5.0118 4.1627 41 1 3.6587 -5.5989 6.1719 42 1 4.3146 -7.0198 8.0719 43 1 3.3025 -9.1628 9.4392 44 1 5.4265 -10.2457 9.2891 45 1 2.1450 -10.2843 6.3904 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_6201210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:15:06 Heat of formation + Delta-G solvation = -117.430800 kcal Electronic energy + Delta-G solvation = -24704.086228 eV Core-core repulsion = 20891.858458 eV Total energy + Delta-G solvation = -3812.227770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 389.062 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66143 -40.58950 -39.04987 -37.28101 -36.29469 -33.55904 -32.36419 -31.88975 -30.39993 -29.50219 -28.87513 -28.31839 -28.29396 -26.30243 -24.27266 -23.31661 -22.26967 -21.66606 -19.56743 -18.59221 -18.26546 -17.55882 -17.28508 -16.96912 -16.63665 -16.26350 -16.23418 -15.51158 -15.03659 -15.01984 -14.61827 -14.51432 -14.16384 -14.02651 -13.95020 -13.89812 -13.82075 -13.74333 -13.71130 -13.18837 -13.15992 -12.98283 -12.78719 -12.52333 -12.38779 -12.30268 -12.18548 -12.08464 -11.87771 -11.75734 -11.27287 -11.24857 -10.71674 -10.70466 -10.55438 -10.33026 -10.13710 -10.01625 -9.30288 -0.04998 0.06905 0.58753 1.14906 1.37938 1.41734 1.46219 1.47599 1.89982 1.93184 1.99952 2.03881 2.37832 2.57915 2.78979 3.35736 3.55439 3.67853 3.84569 3.86444 4.04582 4.06396 4.06601 4.15609 4.27592 4.32852 4.40952 4.66379 4.69840 4.78798 4.80277 4.81856 4.85168 4.85853 4.88861 4.90168 5.03900 5.06795 5.25733 5.30317 5.42985 5.48289 5.59410 5.65737 5.68825 6.06000 6.50291 6.84168 7.17043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.477 4.477 2 Si 1.100 2.900 3 C -0.462 4.462 4 C -0.477 4.477 5 C -0.429 4.429 6 C 0.121 3.879 7 N -0.709 5.709 8 C 0.505 3.495 9 O -0.573 6.573 10 C 0.032 3.968 11 O -0.305 6.305 12 C 0.148 3.852 13 C -0.193 4.193 14 C -0.028 4.028 15 C -0.116 4.116 16 C -0.061 4.061 17 O -0.559 6.559 18 Si 0.946 3.054 19 H -0.246 1.246 20 H -0.261 1.261 21 H -0.276 1.276 22 C -0.071 4.071 23 C -0.141 4.141 24 Br -0.052 7.052 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.421 0.579 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.110 0.890 44 H 0.400 0.600 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 6.920 7.259 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.582 4.582 2 Si 1.290 2.710 3 C -0.569 4.569 4 C -0.582 4.582 5 C -0.513 4.513 6 C -0.002 4.002 7 N -0.364 5.364 8 C 0.291 3.709 9 O -0.451 6.451 10 C -0.045 4.045 11 O -0.218 6.218 12 C 0.100 3.900 13 C -0.212 4.212 14 C -0.047 4.047 15 C -0.117 4.117 16 C -0.173 4.173 17 O -0.368 6.368 18 Si 0.772 3.228 19 H -0.169 1.169 20 H -0.186 1.186 21 H -0.201 1.201 22 C -0.091 4.091 23 C -0.221 4.221 24 Br 0.033 6.967 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.259 0.741 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.195 0.805 42 H 0.182 0.818 43 H 0.128 0.872 44 H 0.251 0.749 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.805 5.732 5.374 8.730 hybrid contribution 0.344 0.041 0.552 0.652 sum 4.149 5.773 5.926 9.255 Atomic orbital electron populations 1.26489 1.23337 1.03917 1.04427 0.77806 0.64215 0.65084 0.63928 1.26257 1.06618 1.19484 1.04548 1.26497 1.06599 1.08068 1.17041 1.26563 1.07681 0.99055 1.17952 1.21183 0.99115 0.92771 0.87120 1.45953 1.53589 1.10470 1.26391 1.20584 0.80299 0.82862 0.87162 1.90781 1.39078 1.67057 1.48212 1.22872 1.02448 0.80963 0.98232 1.86241 1.70577 1.23252 1.41682 1.18787 0.94103 0.89233 0.87876 1.21660 1.01780 1.03241 0.94564 1.21259 0.94614 0.91619 0.97165 1.19435 1.00120 0.95985 0.96192 1.24399 0.86727 1.07145 0.98993 1.86444 1.18187 1.75178 1.56979 0.85758 0.79587 0.77001 0.80480 1.16913 1.18554 1.20141 1.20877 0.97317 0.98994 0.91876 1.21071 1.07725 0.94724 0.98625 1.96743 1.66251 1.84888 1.48832 0.90975 0.91620 0.92140 0.90838 0.91613 0.90813 0.92152 0.91626 0.91009 0.88075 0.88116 0.92224 0.92174 0.74132 0.85111 0.85335 0.80535 0.81766 0.87240 0.74882 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 1.44 8.65 113.37 0.98 2.42 16 2 Si 1.10 -8.53 12.19 68.60 0.84 -7.70 16 3 C -0.46 2.85 8.65 113.37 0.98 3.84 16 4 C -0.48 1.38 8.65 113.37 0.98 2.36 16 5 C -0.43 3.81 4.56 71.98 0.33 4.14 16 6 C 0.12 -0.27 5.05 86.38 0.44 0.17 16 7 N -0.71 2.63 5.56 -463.05 -2.57 0.06 16 8 C 0.51 1.84 7.91 87.66 0.69 2.53 16 9 O -0.57 -9.08 16.50 15.99 0.26 -8.82 16 10 C 0.03 -0.10 5.22 71.24 0.37 0.28 16 11 O -0.31 -2.11 9.01 -73.54 -0.66 -2.77 16 12 C 0.15 0.72 6.68 22.52 0.15 0.87 16 13 C -0.19 0.51 9.04 22.36 0.20 0.71 16 14 C -0.03 0.07 9.60 22.26 0.21 0.28 16 15 C -0.12 -0.13 5.42 -19.85 -0.11 -0.23 16 16 C -0.06 0.21 2.81 71.24 0.20 0.41 16 17 O -0.56 1.84 12.74 -148.98 -1.90 -0.06 16 18 Si 0.95 -0.49 25.07 68.60 1.72 1.23 16 19 H -0.25 0.43 7.11 99.48 0.71 1.14 16 20 H -0.26 -0.46 7.11 99.48 0.71 0.25 16 21 H -0.28 -1.29 7.11 99.48 0.71 -0.59 16 22 C -0.07 -0.39 8.40 22.27 0.19 -0.20 16 23 C -0.14 -1.18 6.24 22.40 0.14 -1.04 16 24 Br -0.05 -0.60 33.16 -20.37 -0.68 -1.28 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 28 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 29 H 0.06 -0.31 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 31 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 32 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.10 -1.15 7.96 -2.39 -0.02 -1.17 16 35 H 0.10 -1.13 7.96 -2.39 -0.02 -1.15 16 36 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 37 H 0.06 0.02 7.79 -2.39 -0.02 0.00 16 38 H 0.42 -4.97 8.47 -92.71 -0.79 -5.75 16 39 H 0.13 -1.34 7.66 -2.39 -0.02 -1.36 16 40 H 0.13 -1.25 7.66 -2.39 -0.02 -1.27 16 41 H 0.18 -1.93 6.30 -2.91 -0.02 -1.94 16 42 H 0.16 -1.27 8.06 -2.91 -0.02 -1.30 16 43 H 0.11 -0.98 7.96 -2.39 -0.02 -1.00 16 44 H 0.40 -4.80 8.74 -74.05 -0.65 -5.44 16 45 H 0.13 0.66 4.87 -2.91 -0.01 0.65 16 Total: 0.00 -27.16 395.00 3.10 -24.06 By element: Atomic # 1 Polarization: -21.57 SS G_CDS: 0.33 Total: -21.24 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.76 Total: 16.53 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -2.57 Total: 0.06 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.30 Total: -11.66 kcal Atomic # 14 Polarization: -9.02 SS G_CDS: 2.56 Total: -6.47 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -0.68 Total: -1.28 kcal Total: -27.16 3.10 -24.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_6201210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.375 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds