Wall clock time and date at job start Mon Mar 8 2021 01:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.85137 * 2 1 4 4 C 1.37981 * 120.14406 * 179.70160 * 3 2 1 5 5 C 1.50700 * 120.07690 * 180.29705 * 4 3 2 6 6 C 1.39560 * 119.85166 * 0.28187 * 4 3 2 7 7 C 1.47844 * 120.14300 * 179.97438 * 6 4 3 8 8 O 1.21552 * 120.00305 * 6.26805 * 7 6 4 9 9 N 1.34774 * 120.00123 * 186.27183 * 7 6 4 10 10 C 1.46496 * 120.00499 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47417 * 179.97438 * 10 9 7 12 12 Si 1.86302 * 109.47316 * 180.02562 * 11 10 9 13 13 C 1.86295 * 109.47268 * 59.99776 * 12 11 10 14 14 C 1.86298 * 109.47303 * 179.97438 * 12 11 10 15 15 C 1.86303 * 109.47102 * 299.99900 * 12 11 10 16 16 C 1.39598 * 119.71141 * 359.97438 * 6 4 3 17 17 C 1.37940 * 119.85051 * 359.97438 * 16 6 4 18 18 C 1.50693 * 119.92272 * 179.97438 * 17 16 6 19 19 O 1.42896 * 109.47344 * 255.00245 * 18 17 16 20 20 Si 1.86307 * 109.47321 * 15.00336 * 18 17 16 21 21 H 1.48498 * 109.46882 * 59.99834 * 20 18 17 22 22 H 1.48501 * 109.46979 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46957 * 299.99796 * 20 18 17 24 24 H 1.08998 * 109.47009 * 89.99637 * 1 2 3 25 25 H 1.09002 * 109.46734 * 209.99894 * 1 2 3 26 26 H 1.09001 * 109.46868 * 329.99511 * 1 2 3 27 27 H 1.07996 * 119.93275 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.46932 * 96.59458 * 5 4 3 29 29 H 1.08991 * 109.47395 * 216.59666 * 5 4 3 30 30 H 1.09004 * 109.46992 * 336.60131 * 5 4 3 31 31 H 0.97004 * 119.99619 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47401 * 300.00299 * 10 9 7 33 33 H 1.08999 * 109.46950 * 60.00278 * 10 9 7 34 34 H 1.09009 * 109.46979 * 300.00136 * 11 10 9 35 35 H 1.08993 * 109.47512 * 60.00154 * 11 10 9 36 36 H 1.09009 * 109.47155 * 60.00188 * 13 12 11 37 37 H 1.09000 * 109.47482 * 179.97438 * 13 12 11 38 38 H 1.08997 * 109.47308 * 300.00420 * 13 12 11 39 39 H 1.09002 * 109.47287 * 59.99963 * 14 12 11 40 40 H 1.08998 * 109.47427 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47124 * 300.00113 * 14 12 11 42 42 H 1.09007 * 109.47094 * 59.99557 * 15 12 11 43 43 H 1.08992 * 109.47385 * 179.97438 * 15 12 11 44 44 H 1.09003 * 109.46758 * 300.00493 * 15 12 11 45 45 H 1.07994 * 120.06971 * 179.97438 * 16 6 4 46 46 H 1.09003 * 109.47493 * 135.00208 * 18 17 16 47 47 H 0.96703 * 114.00143 * 60.00343 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1998 0.0000 4 6 3.5754 1.2069 0.0062 5 6 4.3239 2.5148 0.0130 6 6 4.2762 0.0000 0.0066 7 6 5.7547 0.0000 0.0126 8 8 6.3620 1.0462 0.1322 9 7 6.4291 -1.1598 -0.1146 10 6 7.8941 -1.1598 -0.1091 11 6 8.4047 -2.5934 -0.2669 12 14 10.2677 -2.5934 -0.2591 13 6 10.8821 -1.8892 1.3524 14 6 10.8895 -4.3391 -0.4504 15 6 10.8946 -1.5521 -1.6711 16 6 3.5752 -1.2072 0.0011 17 6 2.1959 -1.2001 -0.0040 18 6 1.4375 -2.5023 -0.0104 19 8 0.9013 -2.7349 -1.3144 20 14 2.5893 -3.8941 0.4447 21 1 3.1465 -3.6524 1.7999 22 1 1.8418 -5.1772 0.4390 23 1 3.6976 -3.9619 -0.5413 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6521 2.1330 -0.0004 28 1 4.6022 2.7688 1.0358 29 1 5.2232 2.4219 -0.5959 30 1 3.6876 3.2997 -0.3960 31 1 5.9445 -1.9947 -0.2097 32 1 8.2605 -0.5503 -0.9351 33 1 8.2539 -0.7481 0.8338 34 1 8.0383 -3.2026 0.5595 35 1 8.0450 -3.0056 -1.2095 36 1 10.5154 -2.4985 2.1786 37 1 11.9721 -1.8896 1.3571 38 1 10.5183 -0.8679 1.4648 39 1 10.5301 -4.7516 -1.3932 40 1 11.9795 -4.3391 -0.4464 41 1 10.5228 -4.9481 0.3759 42 1 10.5307 -0.5307 -1.5587 43 1 11.9845 -1.5517 -1.6663 44 1 10.5350 -1.9641 -2.6140 45 1 4.1117 -2.1445 0.0010 46 1 0.6239 -2.4527 0.7134 47 1 1.5703 -2.7909 -2.0105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9043546_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:18:48 Heat of formation + Delta-G solvation = -100.908816 kcal Electronic energy + Delta-G solvation = -23739.013957 eV Core-core repulsion = 20430.465211 eV Total energy + Delta-G solvation = -3308.548747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57957 -39.93838 -37.71008 -36.37039 -34.35301 -33.61722 -31.44155 -29.55414 -29.10207 -28.50192 -28.46823 -28.36025 -25.60818 -23.99485 -23.61448 -22.08344 -20.92635 -19.06131 -17.59346 -17.43516 -16.71230 -16.58767 -16.40016 -16.16353 -15.72409 -15.28643 -15.04515 -14.59482 -14.47981 -14.40259 -14.31555 -14.12115 -14.03981 -13.87140 -13.78613 -13.41890 -13.35732 -13.27252 -13.15136 -13.09010 -12.95060 -12.80191 -12.69209 -12.58548 -12.43937 -12.20945 -11.94447 -11.78530 -11.11182 -10.90679 -10.87314 -10.49328 -10.41590 -10.08208 -9.86863 -9.55531 -0.18121 0.18721 1.02438 1.25862 1.40141 1.54702 1.77389 1.79291 1.79671 1.86627 2.28234 2.59519 2.72365 3.36057 3.50377 3.58744 3.70626 3.84462 3.99115 4.11019 4.18703 4.20028 4.44201 4.54215 4.54932 4.59774 4.64865 4.66091 4.69970 4.70632 4.72124 4.74070 4.74622 4.75598 4.89631 4.90333 4.96563 5.07828 5.09793 5.11670 5.29973 5.40380 5.46678 5.49861 5.51558 5.52119 5.61428 5.84551 6.45544 6.50132 7.25314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.132 4.132 4 C -0.009 4.009 5 C -0.124 4.124 6 C -0.145 4.145 7 C 0.556 3.444 8 O -0.528 6.528 9 N -0.728 5.728 10 C 0.129 3.871 11 C -0.436 4.436 12 Si 1.025 2.975 13 C -0.454 4.454 14 C -0.451 4.451 15 C -0.454 4.454 16 C -0.086 4.086 17 C -0.138 4.138 18 C -0.077 4.077 19 O -0.535 6.535 20 Si 0.938 3.062 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.251 1.251 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -2.804 -0.380 2.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.023 4.023 3 C -0.150 4.150 4 C -0.010 4.010 5 C -0.180 4.180 6 C -0.148 4.148 7 C 0.344 3.656 8 O -0.406 6.406 9 N -0.381 5.381 10 C 0.006 3.994 11 C -0.520 4.520 12 Si 1.220 2.780 13 C -0.561 4.561 14 C -0.559 4.559 15 C -0.561 4.561 16 C -0.104 4.104 17 C -0.139 4.139 18 C -0.188 4.188 19 O -0.340 6.340 20 Si 0.760 3.240 21 H -0.170 1.170 22 H -0.172 1.172 23 H -0.175 1.175 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.102 -2.732 0.268 2.747 hybrid contribution -0.042 -0.151 -0.409 0.438 sum 0.060 -2.883 -0.142 2.887 Atomic orbital electron populations 1.20928 0.90276 1.03145 1.03357 1.19983 0.96641 0.91889 0.93778 1.21049 0.93152 0.98103 1.02718 1.20107 0.93405 0.94891 0.92563 1.21125 1.00918 0.92063 1.03880 1.19645 0.92718 0.93663 1.08791 1.18282 0.87055 0.83765 0.76470 1.90744 1.69984 1.30705 1.49182 1.46170 1.07838 1.09165 1.74955 1.21094 0.78923 0.96793 1.02597 1.26611 1.21934 0.98094 1.05373 0.78966 0.64643 0.67129 0.67309 1.26186 1.06394 1.06957 1.16598 1.26129 1.06457 1.18661 1.04617 1.26183 1.06464 1.09702 1.13761 1.21156 0.93892 0.97099 0.98266 1.20003 0.93026 0.95907 1.04928 1.24920 1.04925 0.99435 0.89482 1.86530 1.36930 1.94557 1.15943 0.85869 0.78287 0.78444 0.81365 1.16989 1.17224 1.17544 0.90026 0.90732 0.91287 0.84889 0.90367 0.88536 0.92132 0.76805 0.90983 0.90997 0.89807 0.89761 0.91255 0.91094 0.91059 0.91234 0.91033 0.91237 0.91063 0.91096 0.91242 0.86029 0.86234 0.77707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 9.53 36.01 0.34 0.46 16 2 C -0.02 -0.01 5.89 -104.53 -0.62 -0.63 16 3 C -0.13 -0.12 9.31 -39.64 -0.37 -0.49 16 4 C -0.01 -0.02 5.91 -104.22 -0.62 -0.64 16 5 C -0.12 -0.26 8.73 36.01 0.31 0.05 16 6 C -0.15 -0.33 5.87 -104.97 -0.62 -0.94 16 7 C 0.56 1.77 7.70 -12.33 -0.09 1.67 16 8 O -0.53 -3.07 13.35 5.32 0.07 -3.00 16 9 N -0.73 -0.48 5.51 -61.26 -0.34 -0.82 16 10 C 0.13 -0.04 5.05 -4.05 -0.02 -0.06 16 11 C -0.44 1.18 4.56 37.16 0.17 1.35 16 12 Si 1.02 -3.42 12.19 -169.99 -2.07 -5.49 16 13 C -0.45 0.78 8.65 101.05 0.87 1.65 16 14 C -0.45 1.01 8.65 101.05 0.87 1.88 16 15 C -0.45 0.80 8.65 101.05 0.87 1.67 16 16 C -0.09 -0.04 8.13 -39.18 -0.32 -0.36 16 17 C -0.14 -0.02 5.25 -104.68 -0.55 -0.57 16 18 C -0.08 0.09 2.04 36.00 0.07 0.16 16 19 O -0.53 0.36 12.81 -35.23 -0.45 -0.09 16 20 Si 0.94 -1.27 25.49 -169.99 -4.33 -5.60 16 21 H -0.25 0.13 7.11 56.52 0.40 0.53 16 22 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 23 H -0.25 0.52 6.73 56.52 0.38 0.90 16 24 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.07 -0.10 6.22 -51.93 -0.32 -0.43 16 26 H 0.07 -0.12 8.08 -51.93 -0.42 -0.54 16 27 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 0.36 5.86 -51.93 -0.30 0.06 16 30 H 0.06 0.03 8.04 -51.93 -0.42 -0.39 16 31 H 0.40 -0.55 6.55 -40.82 -0.27 -0.82 16 32 H 0.07 0.00 7.79 -51.93 -0.40 -0.40 16 33 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 34 H 0.08 -0.27 7.96 -51.92 -0.41 -0.68 16 35 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 36 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.09 7.79 -51.92 -0.40 -0.49 16 43 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 45 H 0.12 -0.17 3.28 -52.49 -0.17 -0.34 16 46 H 0.12 -0.23 6.47 -51.93 -0.34 -0.56 16 47 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 LS Contribution 374.60 15.07 5.65 5.65 Total: 0.00 -6.07 374.60 -8.42 -14.49 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -7.27 Total: -10.36 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 0.32 Total: 5.22 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.34 Total: -0.82 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: -0.38 Total: -3.09 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: -6.41 Total: -11.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -6.07 -8.42 -14.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.414 kcal (2) G-P(sol) polarization free energy of solvation -6.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds