Wall clock time and date at job start Mon Mar 8 2021 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.85137 * 2 1 4 4 C 1.37981 * 120.14406 * 179.70160 * 3 2 1 5 5 C 1.50700 * 120.07690 * 180.29705 * 4 3 2 6 6 C 1.39560 * 119.85166 * 0.28187 * 4 3 2 7 7 C 1.47844 * 120.14300 * 179.97438 * 6 4 3 8 8 O 1.21552 * 120.00305 * 6.26805 * 7 6 4 9 9 N 1.34774 * 120.00123 * 186.27183 * 7 6 4 10 10 C 1.46496 * 120.00499 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47417 * 179.97438 * 10 9 7 12 12 Si 1.86302 * 109.47316 * 180.02562 * 11 10 9 13 13 C 1.86295 * 109.47268 * 59.99776 * 12 11 10 14 14 C 1.86298 * 109.47303 * 179.97438 * 12 11 10 15 15 C 1.86303 * 109.47102 * 299.99900 * 12 11 10 16 16 C 1.39598 * 119.71141 * 359.97438 * 6 4 3 17 17 C 1.37940 * 119.85051 * 359.97438 * 16 6 4 18 18 C 1.50693 * 119.92272 * 179.97438 * 17 16 6 19 19 O 1.42896 * 109.47344 * 255.00245 * 18 17 16 20 20 Si 1.86307 * 109.47321 * 15.00336 * 18 17 16 21 21 H 1.48498 * 109.46882 * 59.99834 * 20 18 17 22 22 H 1.48501 * 109.46979 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46957 * 299.99796 * 20 18 17 24 24 H 1.08998 * 109.47009 * 89.99637 * 1 2 3 25 25 H 1.09002 * 109.46734 * 209.99894 * 1 2 3 26 26 H 1.09001 * 109.46868 * 329.99511 * 1 2 3 27 27 H 1.07996 * 119.93275 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.46932 * 96.59458 * 5 4 3 29 29 H 1.08991 * 109.47395 * 216.59666 * 5 4 3 30 30 H 1.09004 * 109.46992 * 336.60131 * 5 4 3 31 31 H 0.97004 * 119.99619 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47401 * 300.00299 * 10 9 7 33 33 H 1.08999 * 109.46950 * 60.00278 * 10 9 7 34 34 H 1.09009 * 109.46979 * 300.00136 * 11 10 9 35 35 H 1.08993 * 109.47512 * 60.00154 * 11 10 9 36 36 H 1.09009 * 109.47155 * 60.00188 * 13 12 11 37 37 H 1.09000 * 109.47482 * 179.97438 * 13 12 11 38 38 H 1.08997 * 109.47308 * 300.00420 * 13 12 11 39 39 H 1.09002 * 109.47287 * 59.99963 * 14 12 11 40 40 H 1.08998 * 109.47427 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47124 * 300.00113 * 14 12 11 42 42 H 1.09007 * 109.47094 * 59.99557 * 15 12 11 43 43 H 1.08992 * 109.47385 * 179.97438 * 15 12 11 44 44 H 1.09003 * 109.46758 * 300.00493 * 15 12 11 45 45 H 1.07994 * 120.06971 * 179.97438 * 16 6 4 46 46 H 1.09003 * 109.47493 * 135.00208 * 18 17 16 47 47 H 0.96703 * 114.00143 * 60.00343 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1998 0.0000 4 6 3.5754 1.2069 0.0062 5 6 4.3239 2.5148 0.0130 6 6 4.2762 0.0000 0.0066 7 6 5.7547 0.0000 0.0126 8 8 6.3620 1.0462 0.1322 9 7 6.4291 -1.1598 -0.1146 10 6 7.8941 -1.1598 -0.1091 11 6 8.4047 -2.5934 -0.2669 12 14 10.2677 -2.5934 -0.2591 13 6 10.8821 -1.8892 1.3524 14 6 10.8895 -4.3391 -0.4504 15 6 10.8946 -1.5521 -1.6711 16 6 3.5752 -1.2072 0.0011 17 6 2.1959 -1.2001 -0.0040 18 6 1.4375 -2.5023 -0.0104 19 8 0.9013 -2.7349 -1.3144 20 14 2.5893 -3.8941 0.4447 21 1 3.1465 -3.6524 1.7999 22 1 1.8418 -5.1772 0.4390 23 1 3.6976 -3.9619 -0.5413 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6521 2.1330 -0.0004 28 1 4.6022 2.7688 1.0358 29 1 5.2232 2.4219 -0.5959 30 1 3.6876 3.2997 -0.3960 31 1 5.9445 -1.9947 -0.2097 32 1 8.2605 -0.5503 -0.9351 33 1 8.2539 -0.7481 0.8338 34 1 8.0383 -3.2026 0.5595 35 1 8.0450 -3.0056 -1.2095 36 1 10.5154 -2.4985 2.1786 37 1 11.9721 -1.8896 1.3571 38 1 10.5183 -0.8679 1.4648 39 1 10.5301 -4.7516 -1.3932 40 1 11.9795 -4.3391 -0.4464 41 1 10.5228 -4.9481 0.3759 42 1 10.5307 -0.5307 -1.5587 43 1 11.9845 -1.5517 -1.6663 44 1 10.5350 -1.9641 -2.6140 45 1 4.1117 -2.1445 0.0010 46 1 0.6239 -2.4527 0.7134 47 1 1.5703 -2.7909 -2.0105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9043546_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 01:18:47 Heat of formation + Delta-G solvation = -94.528531 kcal Electronic energy + Delta-G solvation = -23738.737287 eV Core-core repulsion = 20430.465211 eV Total energy + Delta-G solvation = -3308.272077 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67049 -40.03053 -37.65650 -36.47260 -34.39410 -33.63993 -31.41268 -29.43558 -29.11032 -28.35380 -28.32300 -28.30022 -25.61070 -23.96727 -23.60615 -22.17160 -20.99216 -19.08062 -17.58624 -17.49665 -16.77191 -16.58047 -16.39304 -16.14459 -15.71921 -15.31234 -15.07105 -14.58160 -14.48276 -14.39781 -14.17467 -13.96761 -13.93076 -13.80081 -13.75638 -13.39450 -13.20281 -13.15492 -13.08117 -12.99623 -12.89522 -12.83065 -12.65560 -12.57775 -12.37811 -12.15621 -11.90498 -11.72131 -11.05360 -10.73351 -10.71602 -10.49498 -10.39266 -10.20486 -9.90649 -9.61176 -0.26533 0.14956 1.13939 1.38060 1.50204 1.71420 1.73214 1.90042 1.99228 2.00677 2.30529 2.63602 2.73758 3.44739 3.53961 3.58694 3.73938 3.82148 4.07699 4.18031 4.22816 4.23373 4.48146 4.52930 4.61190 4.65375 4.69496 4.76678 4.80436 4.81285 4.84819 4.85373 4.85794 4.86852 4.87403 4.90115 5.01865 5.03027 5.12918 5.22201 5.28958 5.44817 5.49416 5.50748 5.58125 5.65379 5.66804 5.80914 6.43649 6.70467 7.11668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.026 4.026 5 C -0.118 4.118 6 C -0.162 4.162 7 C 0.549 3.451 8 O -0.564 6.564 9 N -0.719 5.719 10 C 0.121 3.879 11 C -0.438 4.438 12 Si 1.100 2.900 13 C -0.474 4.474 14 C -0.463 4.463 15 C -0.473 4.473 16 C -0.084 4.084 17 C -0.139 4.139 18 C -0.075 4.075 19 O -0.546 6.546 20 Si 0.960 3.040 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.236 1.236 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.408 0.592 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.139 0.861 46 H 0.127 0.873 47 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -4.053 -0.646 4.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.154 4.154 4 C -0.027 4.027 5 C -0.174 4.174 6 C -0.165 4.165 7 C 0.338 3.662 8 O -0.445 6.445 9 N -0.372 5.372 10 C -0.002 4.002 11 C -0.521 4.521 12 Si 1.290 2.710 13 C -0.579 4.579 14 C -0.570 4.570 15 C -0.578 4.578 16 C -0.102 4.102 17 C -0.139 4.139 18 C -0.185 4.185 19 O -0.353 6.353 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.159 1.159 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.711 -3.995 -0.016 4.058 hybrid contribution 0.207 0.225 -0.326 0.447 sum -0.504 -3.770 -0.342 3.819 Atomic orbital electron populations 1.20957 0.89143 1.03904 1.03572 1.20238 0.97540 0.91832 0.93143 1.21226 0.92670 0.99075 1.02401 1.20232 0.94124 0.94834 0.93558 1.21018 1.00450 0.92920 1.03031 1.19718 0.92328 0.94490 1.09926 1.18554 0.87614 0.83898 0.76139 1.90723 1.70712 1.31992 1.51060 1.46183 1.08310 1.08976 1.73746 1.21225 0.78425 0.98442 1.02077 1.26694 1.22385 0.96527 1.06529 0.77807 0.63285 0.65313 0.64635 1.26445 1.06395 1.06751 1.18314 1.26264 1.06374 1.19428 1.04899 1.26435 1.06468 1.09855 1.15085 1.21304 0.94165 0.97091 0.97646 1.20203 0.92980 0.96507 1.04207 1.24965 1.05206 0.98709 0.89660 1.86505 1.37906 1.94465 1.16388 0.85556 0.78152 0.76957 0.80977 1.18222 1.19398 1.15949 0.89960 0.90197 0.90371 0.83486 0.91250 0.90494 0.90648 0.75550 0.91588 0.91683 0.88627 0.88533 0.91137 0.91372 0.91891 0.90942 0.91362 0.90973 0.91876 0.91378 0.91081 0.84399 0.85507 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.36 9.53 71.24 0.68 1.04 16 2 C -0.03 -0.01 5.89 -19.81 -0.12 -0.13 16 3 C -0.14 -0.25 9.31 22.23 0.21 -0.04 16 4 C -0.03 -0.14 5.91 -19.61 -0.12 -0.26 16 5 C -0.12 -0.70 8.73 71.24 0.62 -0.08 16 6 C -0.16 -0.85 5.87 -20.09 -0.12 -0.97 16 7 C 0.55 4.19 7.70 86.79 0.67 4.86 16 8 O -0.56 -7.83 13.35 -3.88 -0.05 -7.88 16 9 N -0.72 -1.17 5.51 -465.99 -2.57 -3.73 16 10 C 0.12 -0.01 5.05 86.38 0.44 0.42 16 11 C -0.44 2.75 4.56 71.98 0.33 3.08 16 12 Si 1.10 -7.62 12.19 68.60 0.84 -6.78 16 13 C -0.47 1.37 8.65 113.37 0.98 2.35 16 14 C -0.46 2.45 8.65 113.37 0.98 3.43 16 15 C -0.47 1.43 8.65 113.37 0.98 2.41 16 16 C -0.08 -0.05 8.13 22.53 0.18 0.13 16 17 C -0.14 0.05 5.25 -19.90 -0.10 -0.06 16 18 C -0.07 0.24 2.04 71.23 0.15 0.39 16 19 O -0.55 1.37 12.81 -148.98 -1.91 -0.53 16 20 Si 0.96 -3.54 25.49 68.60 1.75 -1.79 16 21 H -0.26 0.44 7.11 99.48 0.71 1.14 16 22 H -0.27 0.04 7.11 99.48 0.71 0.74 16 23 H -0.24 1.47 6.73 99.48 0.67 2.14 16 24 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.08 -0.31 6.22 -2.39 -0.01 -0.33 16 26 H 0.08 -0.37 8.08 -2.39 -0.02 -0.39 16 27 H 0.15 -0.27 8.06 -2.91 -0.02 -0.30 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.08 0.78 5.86 -2.39 -0.01 0.76 16 30 H 0.07 0.14 8.04 -2.39 -0.02 0.13 16 31 H 0.41 -1.41 6.55 -92.70 -0.61 -2.02 16 32 H 0.07 0.08 7.79 -2.39 -0.02 0.06 16 33 H 0.06 0.09 7.79 -2.39 -0.02 0.07 16 34 H 0.10 -0.77 7.96 -2.38 -0.02 -0.79 16 35 H 0.10 -0.79 7.96 -2.39 -0.02 -0.81 16 36 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 37 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 38 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 39 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 40 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 42 H 0.06 -0.08 7.79 -2.38 -0.02 -0.10 16 43 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 44 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.14 -0.52 3.28 -2.91 -0.01 -0.53 16 46 H 0.13 -0.62 6.47 -2.39 -0.02 -0.64 16 47 H 0.39 -3.31 8.70 -74.06 -0.64 -3.95 16 Total: 0.00 -15.07 374.60 4.25 -10.82 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: 0.43 Total: -6.68 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.76 Total: 16.59 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -2.57 Total: -3.73 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -1.96 Total: -8.42 kcal Atomic # 14 Polarization: -11.16 SS G_CDS: 2.58 Total: -8.57 kcal Total: -15.07 4.25 -10.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9043546_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.707 kcal (2) G-P(sol) polarization free energy of solvation -15.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds