Wall clock time and date at job start Mon Mar 8 2021 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35644 * 117.00146 * 2 1 4 4 C 1.40145 * 120.14822 * 180.02562 * 3 2 1 5 5 C 1.47533 * 120.19282 * 0.02562 * 4 3 2 6 6 O 1.21592 * 119.99426 * 48.47951 * 5 4 3 7 7 N 1.34769 * 120.00167 * 228.47894 * 5 4 3 8 8 C 1.46496 * 120.00022 * 355.63391 * 7 5 4 9 9 C 1.46497 * 120.00012 * 175.63243 * 7 5 4 10 10 H 1.08997 * 109.47299 * 0.02562 * 9 7 5 11 11 C 1.53001 * 109.47048 * 120.00080 * 9 7 5 12 12 C 1.53001 * 109.47205 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47245 * 300.00153 * 12 11 9 14 14 H 1.09002 * 109.46996 * 299.99812 * 13 12 11 15 15 O 1.42896 * 109.47124 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47236 * 59.99793 * 13 12 11 17 17 C 1.52999 * 109.47558 * 239.99873 * 9 7 5 18 18 C 1.39706 * 119.61130 * 180.29640 * 4 3 2 19 19 C 1.37783 * 119.91201 * 359.46567 * 18 4 3 20 20 C 1.50703 * 119.85336 * 180.25699 * 19 18 4 21 21 O 1.42904 * 109.47060 * 65.25416 * 20 19 18 22 22 Si 1.86291 * 109.47461 * 185.25849 * 20 19 18 23 23 C 1.38552 * 120.30215 * 0.51143 * 19 18 4 24 24 C 1.38058 * 120.38412 * 359.76826 * 23 19 18 25 25 H 1.08998 * 109.46974 * 60.00023 * 1 2 3 26 26 H 1.09004 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46735 * 300.00568 * 1 2 3 28 28 H 1.08995 * 109.47429 * 274.86546 * 8 7 5 29 29 H 1.09003 * 109.47304 * 34.86765 * 8 7 5 30 30 H 1.08999 * 109.47276 * 154.86742 * 8 7 5 31 31 H 1.08998 * 109.47500 * 299.99907 * 11 9 7 32 32 H 1.09002 * 109.47172 * 60.00181 * 11 9 7 33 33 H 1.09002 * 109.46970 * 59.99981 * 12 11 9 34 34 H 1.09001 * 109.47391 * 179.97438 * 12 11 9 35 35 H 0.96700 * 114.00599 * 60.00064 * 15 13 12 36 36 H 1.08998 * 109.47592 * 180.02562 * 16 13 12 37 37 H 1.09002 * 109.47113 * 60.00090 * 16 13 12 38 38 H 1.09002 * 109.47196 * 300.00146 * 17 9 7 39 39 H 1.09001 * 109.46946 * 59.99703 * 17 9 7 40 40 H 1.08004 * 120.04158 * 179.70026 * 18 4 3 41 41 H 1.09004 * 109.46571 * 305.25741 * 20 19 18 42 42 H 0.96699 * 113.99721 * 60.00127 * 21 20 19 43 43 H 1.48500 * 110.00414 * 179.97438 * 22 20 19 44 44 H 1.48511 * 109.99883 * 301.31613 * 22 20 19 45 45 H 1.07991 * 119.80702 * 179.73866 * 23 19 18 46 46 H 1.08002 * 119.95086 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4442 1.2855 -0.0005 5 6 4.2551 0.0530 -0.0017 6 8 4.0056 -0.8380 -0.7906 7 7 5.2722 -0.0854 0.8716 8 6 5.6337 1.0246 1.7567 9 6 6.0161 -1.3457 0.9359 10 1 5.6068 -2.0468 0.2086 11 6 7.4899 -1.0847 0.6183 12 6 8.2668 -2.4011 0.6848 13 6 8.1452 -2.9947 2.0897 14 1 8.5551 -2.2938 2.8170 15 8 8.8714 -4.2239 2.1519 16 6 6.6716 -3.2557 2.4073 17 6 5.8946 -1.9387 2.3410 18 6 4.0668 2.5362 0.0057 19 6 3.3039 3.6835 0.0013 20 6 3.9769 5.0319 0.0022 21 8 4.6991 5.2047 -1.2188 22 14 2.6888 6.3688 0.1564 23 6 1.9207 3.6033 0.0013 24 6 1.2926 2.3739 0.0009 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 6.3137 1.6983 1.2354 29 1 4.7337 1.5679 2.0445 30 1 6.1229 0.6335 2.6488 31 1 7.5766 -0.6623 -0.3827 32 1 7.8996 -0.3835 1.3453 33 1 7.8570 -3.1020 -0.0425 34 1 9.3167 -2.2153 0.4581 35 1 9.8150 -4.1334 1.9611 36 1 6.5848 -3.6782 3.4083 37 1 6.2617 -3.9566 1.6800 38 1 6.3043 -1.2375 3.0681 39 1 4.8446 -2.1246 2.5673 40 1 5.1447 2.6035 0.0103 41 1 4.6667 5.0930 0.8441 42 1 4.1471 5.1618 -2.0116 43 1 3.3398 7.7036 0.1592 44 1 1.7236 6.2763 -0.9684 45 1 1.3306 4.5077 0.0020 46 1 0.2139 2.3195 0.0013 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:50:31 Heat of formation + Delta-G solvation = -120.922488 kcal Electronic energy + Delta-G solvation = -28501.371949 eV Core-core repulsion = 24551.033923 eV Total energy + Delta-G solvation = -3950.338026 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.00239 -40.81346 -39.48739 -39.24154 -37.28474 -37.26636 -35.29263 -32.72298 -31.91991 -31.89853 -29.75677 -28.54724 -27.91815 -26.17704 -25.21717 -23.85347 -23.32516 -22.38986 -20.94945 -20.48578 -19.14075 -18.43592 -18.28680 -18.21188 -17.58292 -17.33851 -16.75154 -16.38820 -16.18397 -16.13007 -15.88457 -15.60173 -15.43078 -14.92208 -14.80466 -14.56795 -14.52897 -14.19333 -14.11148 -13.63340 -13.49938 -13.42686 -13.30729 -13.22100 -12.91339 -12.82452 -12.45803 -12.40198 -12.22231 -12.20955 -12.05664 -11.70602 -11.64749 -11.26997 -11.07697 -10.79577 -10.54831 -10.13408 -9.73487 -9.32494 -4.89247 -0.16532 0.19620 1.34041 1.54886 1.62839 1.85936 2.01158 2.20713 2.52261 3.24934 3.32567 3.46413 3.59275 3.64966 3.65663 3.75112 3.90523 3.99003 4.07011 4.12853 4.16163 4.19025 4.28291 4.29022 4.33022 4.36286 4.38750 4.40799 4.56525 4.61686 4.64086 4.67081 4.74998 4.80175 4.87151 4.94286 4.97340 4.98077 5.04894 5.07718 5.09462 5.22562 5.27412 5.31781 5.51002 5.56129 6.19100 6.31422 6.49998 6.87445 7.04167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.163 3.837 4 C -0.186 4.186 5 C 0.562 3.438 6 O -0.577 6.577 7 N -0.602 5.602 8 C 0.064 3.936 9 C 0.137 3.863 10 H 0.067 0.933 11 C -0.116 4.116 12 C -0.145 4.145 13 C 0.106 3.894 14 H 0.076 0.924 15 O -0.589 6.589 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.020 4.020 19 C -0.159 4.159 20 C -0.074 4.074 21 O -0.549 6.549 22 Si 0.767 3.233 23 C -0.049 4.049 24 C -0.206 4.206 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.395 0.605 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.385 0.615 43 H -0.305 1.305 44 H -0.283 1.283 45 H 0.156 0.844 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 5.576 5.878 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.116 3.884 4 C -0.190 4.190 5 C 0.351 3.649 6 O -0.457 6.457 7 N -0.333 5.333 8 C -0.078 4.078 9 C 0.034 3.966 10 H 0.086 0.914 11 C -0.154 4.154 12 C -0.183 4.183 13 C 0.047 3.953 14 H 0.094 0.906 15 O -0.398 6.398 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.038 4.038 19 C -0.159 4.159 20 C -0.183 4.183 21 O -0.357 6.357 22 Si 0.673 3.327 23 C -0.067 4.067 24 C -0.224 4.224 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.245 0.755 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.235 0.765 43 H -0.234 1.234 44 H -0.209 1.209 45 H 0.173 0.827 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.715 5.416 5.677 8.032 hybrid contribution 0.483 -0.337 -1.732 1.829 sum -1.231 5.080 3.945 6.549 Atomic orbital electron populations 1.23433 0.75897 1.05547 1.03006 1.86159 1.23904 1.27049 1.87269 1.19266 0.90938 0.85483 0.92728 1.19220 0.91156 0.94026 1.14599 1.18474 0.79933 0.86429 0.80037 1.90769 1.70315 1.43938 1.40697 1.47860 1.32160 1.15639 1.37659 1.22254 1.02263 0.88753 0.94508 1.21135 0.92184 0.85047 0.98231 0.91436 1.21748 0.92991 0.98059 1.02600 1.22199 1.01579 0.96668 0.97893 1.21859 0.92149 0.85578 0.95682 0.90649 1.86487 1.26364 1.33103 1.93859 1.21433 0.93693 0.97250 1.02603 1.21752 1.00590 0.96746 0.96045 1.21128 1.00802 0.88860 0.93049 1.20162 0.93731 0.95735 1.06297 1.25176 1.04666 0.98643 0.89849 1.86583 1.38576 1.94233 1.16350 0.94191 0.76463 0.73966 0.88113 1.21283 0.93819 0.97910 0.93646 1.21430 1.01668 0.90811 1.08512 0.91218 0.87376 0.90207 0.90780 0.90098 0.88561 0.92274 0.88998 0.92779 0.89491 0.75520 0.90501 0.92884 0.88840 0.91942 0.83526 0.84817 0.76545 1.23387 1.20936 0.82656 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.33 -2.74 9.52 -80.20 -0.76 -3.50 16 3 C 0.16 0.88 6.67 22.85 0.15 1.04 16 4 C -0.19 -1.13 4.92 -20.01 -0.10 -1.23 16 5 C 0.56 6.12 6.97 86.70 0.60 6.73 16 6 O -0.58 -11.84 15.85 5.38 0.09 -11.76 16 7 N -0.60 -2.15 2.76 -826.39 -2.28 -4.43 16 8 C 0.06 -0.31 8.07 127.77 1.03 0.73 16 9 C 0.14 0.49 2.51 44.99 0.11 0.60 16 10 H 0.07 0.76 6.91 -2.39 -0.02 0.74 16 11 C -0.12 0.08 5.20 30.60 0.16 0.24 16 12 C -0.15 0.11 5.54 30.59 0.17 0.28 16 13 C 0.11 -0.05 3.47 30.59 0.11 0.05 16 14 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 15 O -0.59 -1.33 13.32 -148.98 -1.98 -3.32 16 16 C -0.11 -0.20 5.58 30.61 0.17 -0.03 16 17 C -0.11 -0.01 5.20 30.61 0.16 0.15 16 18 C -0.02 -0.01 7.39 22.52 0.17 0.16 16 19 C -0.16 0.45 5.35 -19.90 -0.11 0.34 16 20 C -0.07 0.33 2.79 71.24 0.20 0.53 16 21 O -0.55 0.08 12.83 -148.98 -1.91 -1.83 16 22 Si 0.77 -4.10 29.87 68.60 2.05 -2.06 16 23 C -0.05 0.20 8.65 22.30 0.19 0.39 16 24 C -0.21 0.30 9.03 22.34 0.20 0.50 16 25 H 0.07 -0.29 7.66 -2.39 -0.02 -0.31 16 26 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.08 -0.50 7.66 -2.39 -0.02 -0.52 16 28 H 0.07 -0.54 7.05 -2.39 -0.02 -0.56 16 29 H 0.08 -0.43 6.24 -2.39 -0.01 -0.44 16 30 H 0.10 -0.83 6.44 -2.39 -0.02 -0.85 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.09 -0.47 7.67 -2.39 -0.02 -0.49 16 33 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.39 -2.39 9.08 -74.06 -0.67 -3.07 16 36 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 -0.43 6.66 -2.39 -0.02 -0.44 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.15 -0.28 6.23 -2.91 -0.02 -0.30 16 41 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 42 H 0.39 -1.84 8.70 -74.06 -0.64 -2.48 16 43 H -0.31 -0.96 7.11 99.48 0.71 -0.25 16 44 H -0.28 0.44 7.00 99.48 0.70 1.14 16 45 H 0.16 -1.37 4.81 -2.92 -0.01 -1.38 16 46 H 0.16 -1.07 6.30 -2.91 -0.02 -1.09 16 Total: 0.00 -26.14 359.93 -0.75 -26.89 By element: Atomic # 1 Polarization: -11.28 SS G_CDS: -0.27 Total: -11.56 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 4.33 Total: 11.56 kcal Atomic # 7 Polarization: -2.15 SS G_CDS: -2.28 Total: -4.43 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -4.58 Total: -20.41 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.05 Total: -2.06 kcal Total: -26.14 -0.75 -26.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.037 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds