Wall clock time and date at job start Mon Mar 8 2021 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99875 * 2 1 4 4 O 1.21275 * 120.00050 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99897 * 0.02562 * 3 2 1 6 6 N 1.46496 * 109.47120 * 179.97438 * 5 3 2 7 7 C 1.35047 * 125.92882 * 124.99904 * 6 5 3 8 8 C 1.35087 * 107.97800 * 179.97438 * 7 6 5 9 9 C 1.50699 * 126.07079 * 179.97438 * 8 7 6 10 10 O 1.42905 * 109.46868 * 255.01940 * 9 8 7 11 11 Si 1.86298 * 109.47419 * 15.02120 * 9 8 7 12 12 C 1.40847 * 107.84866 * 359.97438 * 8 7 6 13 13 C 1.48420 * 126.03403 * 180.02562 * 12 8 7 14 14 C 1.39320 * 120.11961 * 324.72562 * 13 12 8 15 15 C 1.38025 * 119.87672 * 179.72215 * 14 13 12 16 16 C 1.38321 * 120.12180 * 0.53537 * 15 14 13 17 17 C 1.38318 * 120.23739 * 359.75941 * 16 15 14 18 18 C 1.38029 * 120.12218 * 359.96271 * 17 16 15 19 19 N 1.31621 * 107.92763 * 359.75968 * 12 8 7 20 20 C 1.46499 * 120.00061 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46813 * 179.97438 * 20 2 1 22 22 C 1.53000 * 109.46840 * 299.99664 * 20 2 1 23 23 C 1.52997 * 109.47060 * 180.02562 * 22 20 2 24 24 C 1.53006 * 109.47127 * 300.00449 * 23 22 20 25 25 H 1.09001 * 109.47002 * 299.99574 * 24 23 22 26 26 O 1.42900 * 109.46976 * 179.97438 * 24 23 22 27 27 C 1.52997 * 109.47164 * 59.99836 * 24 23 22 28 28 C 1.52996 * 109.47185 * 59.99783 * 20 2 1 29 29 H 1.09003 * 109.47226 * 269.99581 * 1 2 3 30 30 H 1.08998 * 109.47196 * 29.99871 * 1 2 3 31 31 H 1.08996 * 109.46977 * 149.99774 * 1 2 3 32 32 H 1.09000 * 109.47509 * 299.99958 * 5 3 2 33 33 H 1.09003 * 109.47186 * 60.00197 * 5 3 2 34 34 H 1.07996 * 126.00770 * 359.94425 * 7 6 5 35 35 H 1.09003 * 109.47083 * 135.02553 * 9 8 7 36 36 H 0.96701 * 113.99721 * 60.00264 * 10 9 8 37 37 H 1.48500 * 110.00014 * 58.68128 * 11 9 8 38 38 H 1.48501 * 110.00060 * 180.02562 * 11 9 8 39 39 H 1.08005 * 120.06274 * 359.97438 * 14 13 12 40 40 H 1.08000 * 119.93861 * 180.26920 * 15 14 13 41 41 H 1.07997 * 119.88384 * 179.74252 * 16 15 14 42 42 H 1.07999 * 119.93825 * 179.97438 * 17 16 15 43 43 H 1.07995 * 120.05689 * 180.02562 * 18 17 16 44 44 H 1.09002 * 109.47398 * 300.00326 * 22 20 2 45 45 H 1.09001 * 109.47194 * 60.00507 * 22 20 2 46 46 H 1.08998 * 109.47533 * 59.99948 * 23 22 20 47 47 H 1.08996 * 109.47853 * 180.02562 * 23 22 20 48 48 H 0.96708 * 114.00004 * 59.99909 * 26 24 23 49 49 H 1.09002 * 109.47045 * 180.02562 * 27 24 23 50 50 H 1.09001 * 109.47375 * 59.99966 * 27 24 23 51 51 H 1.08992 * 109.47554 * 299.99819 * 28 20 2 52 52 H 1.09004 * 109.47108 * 60.00069 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 7 2.3373 3.5859 0.0011 7 6 2.3754 4.5962 -0.8943 8 6 3.3917 5.4180 -0.5525 9 6 3.7983 6.6750 -1.2774 10 8 4.9935 6.4303 -2.0215 11 14 2.4370 7.1893 -2.4405 12 6 4.0035 4.8911 0.6016 13 6 5.1631 5.4764 1.3196 14 6 6.1738 6.1194 0.6083 15 6 7.2471 6.6670 1.2816 16 6 7.3258 6.5686 2.6590 17 6 6.3281 5.9260 3.3696 18 6 5.2475 5.3798 2.7069 19 7 3.3617 3.7912 0.9341 20 6 2.1975 -1.2687 -0.0006 21 1 3.2692 -1.0695 -0.0009 22 6 1.8279 -2.0715 1.2484 23 6 2.5934 -3.3962 1.2482 24 6 2.2244 -4.1983 -0.0015 25 1 1.1528 -4.3979 -0.0018 26 8 2.9398 -5.4353 -0.0020 27 6 2.5940 -3.3954 -1.2504 28 6 1.8279 -2.0705 -1.2501 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 0.7583 2.5303 -0.8891 33 1 0.7590 2.5299 0.8909 34 1 1.7108 4.7242 -1.7357 35 1 3.9775 7.4700 -0.5535 36 1 4.9073 5.7330 -2.6859 37 1 1.1802 7.4161 -1.6827 38 1 2.8261 8.4277 -3.1619 39 1 6.1156 6.1928 -0.4677 40 1 8.0290 7.1694 0.7315 41 1 8.1694 6.9948 3.1816 42 1 6.3947 5.8516 4.4450 43 1 4.4690 4.8787 3.2628 44 1 2.0912 -1.5003 2.1386 45 1 0.7563 -2.2707 1.2483 46 1 3.6650 -3.1967 1.2484 47 1 2.3299 -3.9684 2.1376 48 1 2.7543 -5.9972 0.7629 49 1 2.3307 -3.9667 -2.1406 50 1 3.6656 -3.1958 -1.2501 51 1 0.7564 -2.2697 -1.2502 52 1 2.0912 -1.4985 -2.1399 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9156390_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:50:38 Heat of formation + Delta-G solvation = -3.885784 kcal Electronic energy + Delta-G solvation = -34235.402508 eV Core-core repulsion = 29782.216284 eV Total energy + Delta-G solvation = -4453.186223 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.51592 -41.32297 -39.89144 -39.55550 -37.75593 -37.30897 -35.39009 -34.66045 -32.35217 -31.94126 -31.92066 -31.46528 -30.16419 -28.48416 -27.62291 -25.95186 -24.39094 -23.87640 -23.52851 -23.09763 -21.57503 -21.22168 -20.83194 -20.24836 -18.70415 -18.30581 -18.23444 -17.81911 -17.52850 -16.92744 -16.83644 -16.45289 -16.21142 -16.00399 -15.85766 -15.57861 -15.43120 -15.19455 -14.91012 -14.75946 -14.41588 -14.28372 -14.24529 -14.15821 -14.04307 -13.89881 -13.67894 -13.46792 -13.33997 -13.28472 -13.12949 -12.80708 -12.46820 -12.40912 -12.38946 -12.23016 -12.15009 -11.90230 -11.70328 -11.55834 -11.27835 -11.23551 -10.82733 -10.64549 -10.25289 -9.90468 -9.76199 -9.72229 -9.30087 -4.96801 0.04552 0.44447 0.82371 1.28122 1.42674 1.44564 1.65531 1.79036 1.90911 2.06475 2.87563 3.20382 3.27940 3.41162 3.58155 3.59704 3.64243 3.70318 3.88365 3.95786 3.99709 4.05162 4.07978 4.10002 4.15497 4.16357 4.22924 4.28311 4.32305 4.35553 4.40977 4.42656 4.50410 4.58457 4.60388 4.68796 4.78628 4.81869 4.82940 4.90394 4.95654 4.97907 4.99932 5.05063 5.07054 5.15414 5.21687 5.29320 5.30219 5.47003 5.54139 5.59578 5.62269 5.92339 6.03381 6.26523 6.60087 6.84837 6.86365 7.03969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.605 5.605 3 C 0.493 3.507 4 O -0.569 6.569 5 C 0.113 3.887 6 N -0.360 5.360 7 C 0.080 3.920 8 C -0.269 4.269 9 C -0.043 4.043 10 O -0.554 6.554 11 Si 0.805 3.195 12 C 0.107 3.893 13 C -0.040 4.040 14 C -0.113 4.113 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.132 4.132 18 C -0.113 4.113 19 N -0.299 5.299 20 C 0.139 3.861 21 H 0.061 0.939 22 C -0.115 4.115 23 C -0.147 4.147 24 C 0.105 3.895 25 H 0.077 0.923 26 O -0.591 6.591 27 C -0.114 4.114 28 C -0.111 4.111 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.137 0.863 34 H 0.231 0.769 35 H 0.090 0.910 36 H 0.393 0.607 37 H -0.279 1.279 38 H -0.302 1.302 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.394 0.606 49 H 0.077 0.923 50 H 0.048 0.952 51 H 0.097 0.903 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 -2.704 -3.325 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.338 5.338 3 C 0.280 3.720 4 O -0.447 6.447 5 C -0.011 4.011 6 N -0.142 5.142 7 C -0.066 4.066 8 C -0.281 4.281 9 C -0.152 4.152 10 O -0.363 6.363 11 Si 0.709 3.291 12 C -0.058 4.058 13 C -0.041 4.041 14 C -0.132 4.132 15 C -0.149 4.149 16 C -0.136 4.136 17 C -0.150 4.150 18 C -0.132 4.132 19 N -0.120 5.120 20 C 0.035 3.965 21 H 0.079 0.921 22 C -0.154 4.154 23 C -0.185 4.185 24 C 0.047 3.953 25 H 0.095 0.905 26 O -0.400 6.400 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.199 0.801 33 H 0.154 0.846 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.243 0.757 37 H -0.206 1.206 38 H -0.229 1.229 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.244 0.756 49 H 0.095 0.905 50 H 0.067 0.933 51 H 0.115 0.885 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.516 -2.512 -2.894 11.192 hybrid contribution 0.727 0.296 1.112 1.361 sum -9.789 -2.217 -1.782 10.194 Atomic orbital electron populations 1.22284 0.76346 1.05994 1.03805 1.47955 1.08723 1.04398 1.72685 1.21156 0.87966 0.86621 0.76237 1.90811 1.16163 1.87388 1.50291 1.22052 0.88854 0.80278 1.09871 1.48178 1.25138 1.19883 1.21008 1.22922 0.99425 0.88012 0.96194 1.20664 1.02370 1.03740 1.01301 1.24645 0.96766 0.94724 0.99051 1.86330 1.34889 1.61261 1.53783 0.93986 0.73076 0.82672 0.79374 1.20870 0.95886 0.93182 0.95851 1.18093 0.93296 0.99951 0.92808 1.22077 0.92668 0.95762 1.02649 1.21448 0.98494 1.00057 0.94907 1.21602 0.99110 0.98322 0.94556 1.21349 0.94032 0.98566 1.01049 1.21317 0.98953 0.99382 0.93589 1.77687 1.02131 1.17532 1.14661 1.21045 0.96592 0.82882 0.95964 0.92059 1.21730 1.01965 0.94985 0.96685 1.22209 1.00341 0.96714 0.99279 1.21887 0.95731 0.83421 0.94263 0.90492 1.86495 1.70976 1.31611 1.50881 1.21460 1.00278 0.95523 0.97959 1.21740 1.01976 0.94351 0.96844 0.91067 0.87880 0.88818 0.80072 0.84559 0.75317 0.89223 0.75671 1.20595 1.22946 0.82510 0.83916 0.83609 0.84069 0.86696 0.92715 0.88760 0.93221 0.89770 0.75563 0.90473 0.93276 0.88479 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.78 9.30 127.77 1.19 0.41 16 2 N -0.60 2.32 2.76 -822.59 -2.27 0.04 16 3 C 0.49 1.19 7.70 87.66 0.68 1.86 16 4 O -0.57 -8.73 15.04 -3.01 -0.05 -8.78 16 5 C 0.11 -0.65 5.54 85.63 0.47 -0.17 16 6 N -0.36 -1.20 3.39 -351.91 -1.19 -2.39 16 7 C 0.08 -0.11 9.96 83.47 0.83 0.72 16 8 C -0.27 -1.25 5.34 -19.95 -0.11 -1.35 16 9 C -0.04 -0.08 2.00 71.24 0.14 0.07 16 10 O -0.55 -0.95 10.10 -148.98 -1.51 -2.46 16 11 Si 0.80 -3.17 30.74 68.60 2.11 -1.06 16 12 C 0.11 1.32 6.74 42.53 0.29 1.60 16 13 C -0.04 -0.52 5.80 -20.04 -0.12 -0.64 16 14 C -0.11 -1.22 8.94 22.48 0.20 -1.02 16 15 C -0.13 -1.02 10.03 22.24 0.22 -0.79 16 16 C -0.12 -0.76 10.04 22.31 0.22 -0.54 16 17 C -0.13 -1.08 10.03 22.24 0.22 -0.86 16 18 C -0.11 -1.38 9.75 22.48 0.22 -1.16 16 19 N -0.30 -4.00 11.65 -48.16 -0.56 -4.56 16 20 C 0.14 -0.06 2.52 44.99 0.11 0.05 16 21 H 0.06 0.53 6.90 -2.39 -0.02 0.51 16 22 C -0.12 0.35 5.20 30.59 0.16 0.51 16 23 C -0.15 0.27 5.55 30.60 0.17 0.44 16 24 C 0.11 -0.20 3.47 30.60 0.11 -0.10 16 25 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 26 O -0.59 -0.91 13.32 -148.98 -1.98 -2.89 16 27 C -0.11 0.04 5.57 30.61 0.17 0.21 16 28 C -0.11 0.45 5.19 30.61 0.16 0.60 16 29 H 0.07 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.10 -2.01 6.44 -2.39 -0.02 -2.02 16 31 H 0.09 -1.48 6.43 -2.39 -0.02 -1.50 16 32 H 0.18 -3.11 7.33 -2.39 -0.02 -3.13 16 33 H 0.14 -1.32 8.11 -2.39 -0.02 -1.34 16 34 H 0.23 -3.03 6.40 -2.91 -0.02 -3.05 16 35 H 0.09 0.51 7.84 -2.39 -0.02 0.49 16 36 H 0.39 -2.36 8.70 -74.06 -0.64 -3.01 16 37 H -0.28 0.00 7.11 99.48 0.71 0.71 16 38 H -0.30 -1.22 7.11 99.48 0.71 -0.52 16 39 H 0.16 1.53 4.53 -2.91 -0.01 1.52 16 40 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.15 0.15 8.06 -2.91 -0.02 0.12 16 42 H 0.14 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.11 1.41 8.06 -2.91 -0.02 1.38 16 44 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.09 -0.75 7.67 -2.39 -0.02 -0.77 16 46 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.39 -2.60 9.08 -74.05 -0.67 -3.27 16 49 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.10 -0.89 6.66 -2.39 -0.02 -0.91 16 52 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 Total: 0.00 -37.56 413.36 -0.43 -37.99 By element: Atomic # 1 Polarization: -15.39 SS G_CDS: -0.32 Total: -15.71 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.34 Total: -0.18 kcal Atomic # 7 Polarization: -2.88 SS G_CDS: -4.03 Total: -6.91 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -3.53 Total: -14.13 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.11 Total: -1.06 kcal Total: -37.56 -0.43 -37.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9156390_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.103 kcal (2) G-P(sol) polarization free energy of solvation -37.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds